Wall clock time and date at job start Wed Apr 1 2020 04:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86798 * 120.00301 * 2 1 4 4 H 1.48499 * 109.47466 * 269.99938 * 3 2 1 5 5 H 1.48497 * 109.47003 * 29.99984 * 3 2 1 6 6 H 1.48511 * 109.47119 * 149.99862 * 3 2 1 7 7 C 1.38657 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00320 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00206 * 179.97438 * 7 2 1 10 10 C 1.35755 * 117.00177 * 185.05444 * 9 7 2 11 11 C 1.38875 * 120.06775 * 354.47018 * 10 9 7 12 12 C 1.38099 * 119.92834 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06856 * 0.03189 * 12 11 10 14 14 C 1.50703 * 119.92818 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47358 * 89.99641 * 14 13 12 16 16 O 1.21284 * 119.99962 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00135 * 179.97438 * 15 14 13 18 18 N 1.40099 * 120.00176 * 179.97438 * 17 15 14 19 19 C 1.39172 * 120.00340 * 179.97438 * 18 17 15 20 20 C 1.39533 * 120.85404 * 359.97438 * 19 18 17 21 21 C 1.37841 * 119.09663 * 180.02562 * 20 19 18 22 22 N 1.32028 * 120.86149 * 0.02562 * 21 20 19 23 23 C 1.32074 * 121.88928 * 359.73051 * 22 21 20 24 24 Cl 1.73598 * 119.59446 * 180.28833 * 23 22 21 25 25 C 1.38087 * 120.80885 * 0.53396 * 23 22 21 26 26 C 1.38301 * 120.14156 * 0.24147 * 13 12 11 27 27 C 1.38106 * 120.06358 * 359.45898 * 26 13 12 28 28 H 0.96999 * 119.99507 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.03657 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.96259 * 180.02562 * 12 11 10 31 31 H 1.09004 * 109.46923 * 329.99399 * 14 13 12 32 32 H 1.09003 * 109.46944 * 209.99439 * 14 13 12 33 33 H 0.97006 * 120.00070 * 0.02562 * 17 15 14 34 34 H 0.97006 * 119.99754 * 0.02562 * 18 17 15 35 35 H 1.08002 * 120.45077 * 0.02562 * 20 19 18 36 36 H 1.08008 * 119.56751 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.46887 * 179.75145 * 25 23 22 38 38 H 1.07992 * 119.96531 * 179.70355 * 26 13 12 39 39 H 1.08002 * 120.02777 * 180.27427 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9733 -2.4059 -0.1060 11 6 3.2233 -3.5746 -0.0920 12 6 3.8532 -4.7988 -0.1995 13 6 5.2295 -4.8617 -0.3203 14 6 5.9137 -6.1995 -0.4368 15 6 6.0203 -6.5843 -1.8899 16 8 5.5833 -5.8453 -2.7466 17 7 6.6013 -7.7497 -2.2374 18 7 6.7000 -8.1077 -3.5883 19 6 7.3004 -9.3109 -3.9473 20 6 7.8106 -10.1737 -2.9766 21 6 8.3983 -11.3559 -3.3728 22 7 8.4823 -11.6754 -4.6511 23 6 8.0076 -10.8885 -5.5996 24 17 8.1433 -11.3710 -7.2617 25 6 7.4091 -9.6842 -5.2858 26 6 5.9797 -3.6999 -0.3288 27 6 5.3551 -2.4723 -0.2279 28 1 -0.4849 0.8401 -0.0004 29 1 2.1486 -3.5261 0.0036 30 1 3.2704 -5.7081 -0.1891 31 1 5.3332 -6.9521 0.0968 32 1 6.9119 -6.1359 -0.0036 33 1 6.9505 -8.3409 -1.5522 34 1 6.3505 -7.5167 -4.2735 35 1 7.7458 -9.9187 -1.9291 36 1 8.7961 -12.0292 -2.6279 37 1 7.0263 -9.0431 -6.0661 38 1 7.0546 -3.7526 -0.4185 39 1 5.9412 -1.5652 -0.2391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001640180957.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:28 Heat of formation + Delta-G solvation = 11.659840 kcal Electronic energy + Delta-G solvation = -25424.100736 eV Core-core repulsion = 21358.969446 eV Total energy + Delta-G solvation = -4065.131290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56501 -41.03718 -40.46412 -38.47334 -37.78380 -37.21853 -34.53926 -34.10265 -32.92611 -31.97920 -31.80308 -30.34553 -28.22450 -26.72639 -24.86333 -23.90029 -23.70109 -22.67650 -21.63792 -19.87380 -19.66256 -19.08219 -18.87064 -17.56017 -16.98181 -16.83958 -16.81799 -16.47376 -16.14726 -15.76656 -15.72800 -15.58786 -15.47452 -15.32089 -14.89380 -14.79296 -14.38432 -14.25680 -14.07671 -13.75915 -13.06354 -12.85696 -12.83904 -12.56270 -12.53918 -12.42438 -12.34721 -12.32089 -11.93796 -11.28217 -11.20954 -11.01495 -10.89864 -10.65208 -10.04832 -9.78266 -9.00005 -8.70283 -8.51326 -6.23819 -0.04652 0.30257 0.44528 0.59427 0.73378 1.04968 1.29792 1.34413 1.50470 1.57465 2.26774 2.70231 2.72207 2.95321 3.10814 3.20125 3.59059 3.72264 3.84043 3.99647 4.04440 4.08083 4.11028 4.17871 4.47527 4.55827 4.58326 4.70145 4.73534 4.82498 4.86895 4.98962 5.25480 5.32435 5.37414 5.55855 5.64085 5.73154 5.79655 5.91453 6.16947 6.25926 6.52640 6.83030 6.84802 7.26047 7.57967 8.60332 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.025100 B = 0.001611 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.288776 B =17376.618769 C =17862.161076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.118 3.882 11 C -0.242 4.242 12 C -0.061 4.061 13 C -0.140 4.140 14 C -0.065 4.065 15 C 0.513 3.487 16 O -0.574 6.574 17 N -0.512 5.512 18 N -0.531 5.531 19 C 0.262 3.738 20 C -0.245 4.245 21 C 0.160 3.840 22 N -0.548 5.548 23 C 0.206 3.794 24 Cl -0.037 7.037 25 C -0.235 4.235 26 C -0.056 4.056 27 C -0.196 4.196 28 H 0.285 0.715 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.441 0.559 34 H 0.434 0.566 35 H 0.170 0.830 36 H 0.198 0.802 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.784 -24.325 -3.436 32.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.069 3.931 11 C -0.261 4.261 12 C -0.079 4.079 13 C -0.141 4.141 14 C -0.106 4.106 15 C 0.301 3.699 16 O -0.450 6.450 17 N -0.263 5.263 18 N -0.254 5.254 19 C 0.148 3.852 20 C -0.271 4.271 21 C 0.005 3.995 22 N -0.264 5.264 23 C 0.042 3.958 24 Cl -0.009 7.009 25 C -0.263 4.263 26 C -0.074 4.074 27 C -0.216 4.216 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.165 0.835 33 H 0.286 0.714 34 H 0.277 0.723 35 H 0.187 0.813 36 H 0.215 0.785 37 H 0.170 0.830 38 H 0.174 0.826 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 20.746 -24.209 -4.192 32.156 hybrid contribution -1.132 1.582 -0.333 1.974 sum 19.614 -22.626 -4.525 30.284 Atomic orbital electron populations 1.69730 1.06884 1.29579 1.50204 1.25300 0.95924 1.02200 0.95568 0.85204 0.78853 0.77382 0.79176 1.19350 1.19014 1.18587 1.20703 0.78163 0.96082 1.52616 0.90270 1.83511 1.21194 1.27600 1.83142 1.19732 0.93357 0.85080 0.94901 1.21267 1.00077 0.93471 1.11279 1.20950 0.94850 0.96097 0.96052 1.19236 0.92687 0.95009 1.07218 1.20501 1.05621 0.94804 0.89638 1.21627 0.76368 0.78948 0.92964 1.90810 1.48844 1.52193 1.53158 1.44973 1.62418 1.22280 0.96592 1.43364 1.64456 1.19918 0.97655 1.17880 0.89660 0.84623 0.93082 1.21853 1.07362 0.96929 1.00938 1.22954 0.91597 0.94145 0.90781 1.67098 1.22474 1.34760 1.02040 1.21286 0.95689 0.90750 0.88027 1.98408 1.96487 1.92289 1.13706 1.21114 1.10113 0.99186 0.95896 1.20988 1.00524 0.90132 0.95710 1.20530 0.90511 1.00009 1.10503 0.90581 0.87749 0.84630 0.84314 0.83464 0.71362 0.72259 0.81282 0.78529 0.83036 0.82561 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.81 13.96 21.61 0.30 -55.50 16 2 C 0.01 0.49 5.49 84.83 0.47 0.95 16 3 Si 0.97 46.06 28.62 68.60 1.96 48.02 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.40 -23.96 9.95 67.92 0.68 -23.29 16 8 H 0.08 4.98 5.44 -2.91 -0.02 4.97 16 9 O -0.25 -13.66 8.59 -22.79 -0.20 -13.85 16 10 C 0.12 5.59 6.65 22.58 0.15 5.74 16 11 C -0.24 -10.68 9.17 22.39 0.21 -10.47 16 12 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16 13 C -0.14 -3.65 4.38 -19.83 -0.09 -3.74 16 14 C -0.07 -0.82 5.83 29.10 0.17 -0.65 16 15 C 0.51 8.94 7.94 87.66 0.70 9.63 16 16 O -0.57 -16.99 15.87 -3.04 -0.05 -17.04 16 17 N -0.51 -5.30 6.23 -173.54 -1.08 -6.38 16 18 N -0.53 -7.12 6.44 -51.01 -0.33 -7.45 16 19 C 0.26 3.19 6.77 38.57 0.26 3.46 16 20 C -0.25 -1.90 9.54 22.49 0.21 -1.69 16 21 C 0.16 1.55 11.17 84.57 0.94 2.50 16 22 N -0.55 -9.13 10.34 -187.00 -1.93 -11.06 16 23 C 0.21 3.48 7.27 84.62 0.61 4.10 16 24 Cl -0.04 -0.62 29.10 -2.72 -0.08 -0.70 16 25 C -0.24 -3.39 9.76 22.51 0.22 -3.17 16 26 C -0.06 -1.58 9.69 22.25 0.22 -1.37 16 27 C -0.20 -7.45 9.99 22.39 0.22 -7.22 16 28 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 29 H 0.10 5.13 5.64 -2.91 -0.02 5.11 16 30 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.14 0.86 8.08 -2.39 -0.02 0.84 16 32 H 0.15 0.65 8.08 -2.39 -0.02 0.63 16 33 H 0.44 0.87 6.69 -213.31 -1.43 -0.55 16 34 H 0.43 7.03 8.03 -213.31 -1.71 5.32 16 35 H 0.17 0.05 6.33 -2.91 -0.02 0.03 16 36 H 0.20 0.49 8.06 -2.91 -0.02 0.47 16 37 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -82.27 360.63 1.79 -80.48 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -2.00 Total: 10.51 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 5.19 Total: -27.02 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -3.04 Total: -80.39 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.24 Total: -30.90 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.96 Total: 48.02 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -82.27 1.79 -80.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640180957.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.137 kcal (2) G-P(sol) polarization free energy of solvation -82.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds