Wall clock time and date at job start Wed Apr 1 2020 04:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42096 * 110.54461 * 2 1 4 4 O 1.42105 * 110.53894 * 223.25609 * 2 1 3 5 5 C 1.76199 * 104.44805 * 111.63011 * 2 1 3 6 6 C 1.38254 * 120.00075 * 269.90555 * 5 2 1 7 7 C 1.38204 * 119.99816 * 179.97438 * 6 5 2 8 8 C 1.38262 * 120.00535 * 0.13864 * 7 6 5 9 9 C 1.38207 * 119.99549 * 359.95204 * 8 7 6 10 10 C 1.50701 * 119.99822 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.46797 * 269.97498 * 10 9 8 12 12 S 1.65608 * 119.99802 * 165.00128 * 11 10 9 13 13 O 1.42092 * 104.27836 * 181.07585 * 12 11 10 14 14 O 1.42101 * 104.27334 * 308.93205 * 12 11 10 15 15 C 1.81404 * 104.44876 * 64.99946 * 12 11 10 16 16 C 1.53004 * 109.46744 * 179.97438 * 15 12 11 17 17 C 1.50699 * 109.46935 * 180.02562 * 16 15 12 18 18 H 1.08007 * 119.99779 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00026 * 180.02562 * 17 16 15 20 20 N 1.31509 * 119.99960 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99722 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47213 * 90.00030 * 21 19 17 23 23 H 1.48499 * 109.47156 * 209.99761 * 21 19 17 24 24 H 1.48492 * 109.47545 * 329.99818 * 21 19 17 25 25 C 1.38220 * 119.99875 * 90.00066 * 5 2 1 26 26 H 1.09004 * 109.47330 * 308.37293 * 1 2 3 27 27 H 1.09002 * 109.47583 * 68.36888 * 1 2 3 28 28 H 1.08996 * 109.47896 * 188.36914 * 1 2 3 29 29 H 1.07997 * 119.99692 * 0.06811 * 6 5 2 30 30 H 1.08013 * 119.99933 * 180.11390 * 7 6 5 31 31 H 1.07991 * 120.00050 * 179.97438 * 8 7 6 32 32 H 1.08993 * 109.47341 * 29.98219 * 10 9 8 33 33 H 1.09001 * 109.46864 * 149.98303 * 10 9 8 34 34 H 0.96996 * 120.00625 * 345.00283 * 11 10 9 35 35 H 1.08990 * 109.47061 * 299.99851 * 15 12 11 36 36 H 1.08995 * 109.46926 * 60.00367 * 15 12 11 37 37 H 1.08999 * 109.47080 * 300.00568 * 16 15 12 38 38 H 1.08997 * 109.46617 * 60.00270 * 16 15 12 39 39 H 0.97003 * 120.00269 * 180.02562 * 20 19 17 40 40 H 1.08000 * 119.99660 * 0.26988 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9119 5 6 2.2536 -0.6290 1.5861 6 6 2.4280 0.2375 2.6493 7 6 2.7723 -0.2560 3.8935 8 6 2.9452 -1.6158 4.0744 9 6 2.7727 -2.4817 3.0111 10 6 2.9605 -3.9639 3.2084 11 7 4.3588 -4.3173 2.9514 12 16 4.9452 -5.7863 3.4421 13 8 6.3120 -5.7653 3.0542 14 8 4.5733 -5.8725 4.8108 15 6 4.0215 -6.9953 2.4542 16 6 4.4791 -8.4088 2.8199 17 6 3.7122 -9.4131 1.9988 18 1 2.9728 -9.0768 1.2870 19 6 3.9545 -10.7612 2.1562 20 7 4.8546 -11.1707 3.0233 21 14 3.0044 -12.0061 1.1379 22 1 3.7374 -12.2750 -0.1254 23 1 2.8624 -13.2690 1.9061 24 1 1.6582 -11.4641 0.8232 25 6 2.4260 -1.9884 1.7670 26 1 -0.3634 0.6380 0.8057 27 1 -0.3634 0.3788 -0.9553 28 1 -0.3635 -1.0166 0.1496 29 1 2.2937 1.2997 2.5078 30 1 2.9067 0.4207 4.7245 31 1 3.2146 -2.0012 5.0465 32 1 2.7009 -4.2299 4.2330 33 1 2.3157 -4.5069 2.5174 34 1 4.9412 -3.6910 2.4938 35 1 2.9559 -6.8936 2.6590 36 1 4.2067 -6.8165 1.3951 37 1 5.5448 -8.5101 2.6148 38 1 4.2942 -8.5878 3.8790 39 1 5.0254 -12.1191 3.1338 40 1 2.2956 -2.6646 0.9350 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001655335061.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:16 Heat of formation + Delta-G solvation = -121.937000 kcal Electronic energy + Delta-G solvation = -25353.923267 eV Core-core repulsion = 21388.193689 eV Total energy + Delta-G solvation = -3965.729577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -39.87634 -37.49202 -36.65554 -36.32697 -35.62180 -35.38616 -33.91399 -31.76541 -31.35777 -31.18410 -29.96840 -26.04235 -25.62305 -23.70234 -22.20311 -21.68524 -19.35150 -18.98827 -18.20354 -17.42668 -16.65386 -16.57090 -16.50783 -16.37503 -16.10725 -15.61406 -15.31506 -14.79562 -14.56994 -14.55715 -13.85905 -13.72706 -13.67001 -13.47681 -13.25908 -13.13637 -12.64030 -12.52242 -12.45709 -12.36690 -12.02991 -11.77580 -11.64047 -11.55998 -11.51464 -11.42134 -11.09548 -10.98348 -10.96505 -10.44920 -10.40501 -9.85341 -9.78139 -9.55767 -9.38089 -9.06873 -8.51899 -6.14033 -4.19750 -0.37802 0.39158 0.64502 0.91382 2.43648 2.88082 3.24505 3.25331 3.31600 3.33995 3.53796 3.67472 4.12648 4.21845 4.28902 4.34520 4.38200 4.51529 4.58893 4.65383 4.79879 4.91650 5.04207 5.14129 5.14609 5.21322 5.39784 5.49507 5.55385 5.59092 5.64364 5.82103 5.86479 6.03514 6.37952 6.45906 6.99891 7.28056 7.34081 7.78891 8.15568 8.83725 9.45213 10.97020 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.002469 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.986668 B =11337.698963 C =12601.613086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.501 3.499 3 O -0.939 6.939 4 O -0.933 6.933 5 C -0.663 4.663 6 C -0.022 4.022 7 C -0.141 4.141 8 C -0.045 4.045 9 C -0.113 4.113 10 C 0.154 3.846 11 N -1.126 6.126 12 S 2.592 3.408 13 O -0.964 6.964 14 O -0.967 6.967 15 C -0.589 4.589 16 C 0.028 3.972 17 C -0.521 4.521 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.010 4.010 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.414 0.586 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.265 0.735 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.403 25.651 -1.774 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.680 3.320 3 O -0.936 6.936 4 O -0.931 6.931 5 C -0.750 4.750 6 C -0.041 4.041 7 C -0.160 4.160 8 C -0.064 4.064 9 C -0.115 4.115 10 C 0.028 3.972 11 N -0.883 5.883 12 S 2.690 3.310 13 O -0.955 6.955 14 O -0.957 6.957 15 C -0.723 4.723 16 C -0.011 4.011 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.728 3.272 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.029 4.029 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.159 0.841 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.248 0.752 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.198 25.509 -1.550 27.515 hybrid contribution -1.164 -0.846 -0.423 1.500 sum -11.362 24.662 -1.973 27.225 Atomic orbital electron populations 1.30227 1.25658 1.12253 1.11851 1.05165 0.77865 0.74638 0.74316 1.93586 1.77367 1.36598 1.86084 1.93618 1.77199 1.61494 1.60758 1.30545 1.19467 1.02815 1.22148 1.20976 0.92151 0.99391 0.91558 1.21328 1.01340 0.95628 0.97661 1.21551 0.92404 0.93280 0.99141 1.20014 1.01910 0.95778 0.93845 1.20215 0.82902 0.91129 1.02975 1.55924 1.18899 1.36084 1.77403 1.05614 0.75193 0.74336 0.75903 1.93562 1.31920 1.85617 1.84386 1.93535 1.84454 1.85711 1.31974 1.30446 1.13216 1.14693 1.13915 1.18969 0.97949 0.85785 0.98438 1.21003 1.22045 0.90538 1.22444 0.92003 1.25069 0.95310 0.98685 0.95427 1.69952 1.32657 1.15730 1.34519 0.86462 0.80164 0.80556 0.80055 1.20444 1.21027 1.19756 1.20957 0.91449 0.93284 0.97230 0.85010 0.84979 0.84789 0.84084 0.84757 0.84567 0.88910 0.90314 0.75223 0.86265 0.85906 0.94804 0.94799 0.92508 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.72 10.80 101.05 1.09 -0.63 16 2 S 2.50 16.94 5.80 -107.50 -0.62 16.32 16 3 O -0.94 -9.17 17.13 -57.54 -0.99 -10.15 16 4 O -0.93 -9.85 17.12 -57.54 -0.99 -10.83 16 5 C -0.66 -5.06 5.66 -39.58 -0.22 -5.28 16 6 C -0.02 -0.15 9.47 -39.59 -0.37 -0.53 16 7 C -0.14 -0.98 10.05 -39.59 -0.40 -1.38 16 8 C -0.05 -0.37 9.70 -39.58 -0.38 -0.75 16 9 C -0.11 -1.02 5.28 -104.63 -0.55 -1.57 16 10 C 0.15 1.54 6.26 -5.19 -0.03 1.51 16 11 N -1.13 -13.86 5.88 -11.66 -0.07 -13.93 16 12 S 2.59 44.40 5.46 -107.50 -0.59 43.81 16 13 O -0.96 -19.77 18.08 -57.54 -1.04 -20.81 16 14 O -0.97 -19.07 17.50 -57.54 -1.01 -20.08 16 15 C -0.59 -10.79 6.01 37.16 0.22 -10.57 16 16 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 17 C -0.52 -14.20 9.11 -34.44 -0.31 -14.52 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 21 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.01 -0.08 9.13 -39.58 -0.36 -0.44 16 26 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 27 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 28 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.14 0.73 7.57 -52.49 -0.40 0.34 16 30 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 31 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.09 0.91 7.64 -51.93 -0.40 0.52 16 33 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.41 4.59 8.61 -34.47 -0.30 4.29 16 35 H 0.12 1.89 8.14 -51.93 -0.42 1.46 16 36 H 0.12 2.04 8.14 -51.93 -0.42 1.61 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.15 1.08 7.57 -52.49 -0.40 0.69 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -40.63 371.62 -10.80 -51.43 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.25 Total: 0.32 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: -1.56 Total: -32.09 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.67 Total: -39.51 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: -4.02 Total: -61.87 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 61.35 SS G_CDS: -1.21 Total: 60.13 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -40.63 -10.80 -51.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655335061.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.510 kcal (2) G-P(sol) polarization free energy of solvation -40.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds