Wall clock time and date at job start Wed Apr 1 2020 04:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47291 * 2 1 4 4 C 1.36934 * 119.99776 * 275.24033 * 3 2 1 5 5 H 1.08009 * 120.00257 * 146.57521 * 4 3 2 6 6 C 1.38812 * 120.00308 * 326.58025 * 4 3 2 7 7 N 1.31622 * 119.99758 * 336.13002 * 6 4 3 8 8 Si 1.86795 * 120.00481 * 156.12999 * 6 4 3 9 9 H 1.48496 * 109.47368 * 59.99670 * 8 6 4 10 10 H 1.48496 * 109.47426 * 180.02562 * 8 6 4 11 11 H 1.48511 * 109.46960 * 299.99963 * 8 6 4 12 12 S 1.65604 * 120.00474 * 95.23972 * 3 2 1 13 13 O 1.42094 * 104.27614 * 153.93071 * 12 3 2 14 14 O 1.42100 * 104.27162 * 26.06983 * 12 3 2 15 15 C 1.81397 * 104.44895 * 270.00303 * 12 3 2 16 16 C 1.50697 * 109.47346 * 179.97438 * 15 12 3 17 17 C 1.38257 * 120.00450 * 270.02439 * 16 15 12 18 18 C 1.38214 * 120.00275 * 179.97438 * 17 16 15 19 19 C 1.38253 * 120.00086 * 359.96109 * 18 17 16 20 20 C 1.38214 * 119.99845 * 0.05828 * 19 18 17 21 21 S 1.76199 * 119.99633 * 179.97438 * 20 19 18 22 22 C 1.81396 * 104.45141 * 269.95543 * 21 20 19 23 23 O 1.42098 * 104.27728 * 26.03069 * 21 20 19 24 24 O 1.42102 * 104.27749 * 153.88683 * 21 20 19 25 25 C 1.38213 * 120.00112 * 89.99155 * 16 15 12 26 26 H 1.08997 * 109.47330 * 300.00861 * 1 2 3 27 27 H 1.08998 * 109.46613 * 60.00598 * 1 2 3 28 28 H 1.08996 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47330 * 239.99139 * 2 1 3 30 30 H 1.08998 * 109.46613 * 119.99401 * 2 1 3 31 31 H 0.96990 * 119.99979 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47281 * 59.99884 * 15 12 3 33 33 H 1.09001 * 109.46937 * 299.99579 * 15 12 3 34 34 H 1.08003 * 119.99421 * 359.97289 * 17 16 15 35 35 H 1.08003 * 119.99376 * 179.97438 * 18 17 16 36 36 H 1.07993 * 119.99662 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46981 * 60.00452 * 22 21 20 38 38 H 1.09005 * 109.47245 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47631 * 300.00281 * 22 21 20 40 40 H 1.08001 * 119.99759 * 359.73146 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1445 2.0627 -1.1810 5 1 1.9695 3.1281 -1.2110 6 6 2.4972 1.3845 -2.3396 7 7 3.1522 0.2454 -2.2618 8 14 2.0422 2.0881 -4.0091 9 1 2.6694 3.4244 -4.1707 10 1 2.5287 1.1798 -5.0784 11 1 0.5661 2.2192 -4.1054 12 16 2.4179 2.1183 1.4281 13 8 3.3745 3.1021 1.0590 14 8 2.7668 1.0445 2.2910 15 6 0.8779 2.9028 1.9789 16 6 1.1160 3.6143 3.2858 17 6 0.9315 2.9446 4.4812 18 6 1.1504 3.5970 5.6799 19 6 1.5547 4.9190 5.6835 20 6 1.7388 5.5887 4.4886 21 16 2.2534 7.2738 4.4933 22 6 0.7059 8.2197 4.5218 23 8 2.9520 7.4235 5.7217 24 8 2.9172 7.4411 3.2480 25 6 1.5196 4.9361 3.2896 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.3989 -0.2283 -3.0714 32 1 0.1104 2.1408 2.1150 33 1 0.5477 3.6213 1.2287 34 1 0.6162 1.9116 4.4783 35 1 1.0058 3.0738 6.6136 36 1 1.7253 5.4289 6.6202 37 1 0.1405 7.9644 5.4181 38 1 0.9318 9.2861 4.5267 39 1 0.1153 7.9771 3.6383 40 1 1.6685 5.4579 2.3558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659762378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:26 Heat of formation + Delta-G solvation = -99.528150 kcal Electronic energy + Delta-G solvation = -26759.265281 eV Core-core repulsion = 22794.507424 eV Total energy + Delta-G solvation = -3964.757857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -39.52090 -37.24542 -36.08978 -36.07371 -35.86766 -34.78857 -33.17161 -31.68458 -31.46241 -29.78461 -29.25990 -27.39835 -24.61055 -23.45478 -22.26342 -21.51071 -19.08130 -18.48173 -17.73808 -17.24919 -16.43752 -16.40396 -16.22085 -16.16038 -15.65293 -15.30983 -14.74114 -14.49521 -14.40667 -13.66796 -13.56295 -13.50308 -13.47982 -13.05888 -12.88068 -12.48489 -12.40269 -12.30791 -12.20266 -12.11336 -11.94830 -11.51539 -11.29110 -11.27492 -11.05536 -11.00624 -10.92664 -10.82864 -10.75622 -10.56474 -10.44290 -10.16614 -9.80854 -9.48212 -9.15150 -8.77266 -7.71123 -6.25111 -3.93500 -0.14858 0.62503 0.91054 1.40497 2.66888 3.22537 3.26061 3.27729 3.28917 3.76829 3.81728 3.92679 4.29066 4.46024 4.47195 4.54604 4.71404 4.77887 4.84442 4.91154 5.01879 5.10560 5.27551 5.31008 5.43837 5.58153 5.71070 5.83183 5.87825 6.02556 6.07531 6.18718 6.24636 6.31215 6.53693 6.63953 6.87655 7.25887 7.41238 7.79291 8.41894 9.01160 9.38317 10.76687 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.003501 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.284390 B = 7995.861806 C = 8971.406566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.844 5.844 4 C -0.287 4.287 5 H 0.092 0.908 6 C 0.038 3.962 7 N -0.856 5.856 8 Si 0.915 3.085 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.274 1.274 12 S 2.550 3.450 13 O -0.955 6.955 14 O -0.988 6.988 15 C -0.598 4.598 16 C -0.094 4.094 17 C -0.056 4.056 18 C -0.137 4.137 19 C -0.028 4.028 20 C -0.659 4.659 21 S 2.499 3.501 22 C -0.651 4.651 23 O -0.938 6.938 24 O -0.928 6.928 25 C -0.016 4.016 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.268 0.732 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 9.265 12.772 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.676 5.676 4 C -0.422 4.422 5 H 0.110 0.890 6 C -0.169 4.169 7 N -0.495 5.495 8 Si 0.741 3.259 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.200 1.200 12 S 2.649 3.351 13 O -0.945 6.945 14 O -0.977 6.977 15 C -0.721 4.721 16 C -0.096 4.096 17 C -0.075 4.075 18 C -0.155 4.155 19 C -0.047 4.047 20 C -0.745 4.745 21 S 2.678 3.322 22 C -0.800 4.800 23 O -0.936 6.936 24 O -0.925 6.925 25 C -0.035 4.035 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.424 9.454 13.191 18.767 hybrid contribution -1.748 -0.114 -0.915 1.977 sum -11.172 9.340 12.276 19.046 Atomic orbital electron populations 1.22239 0.98937 1.00199 1.00954 1.21374 0.91302 0.84340 1.04973 1.52682 1.76970 1.20558 1.17349 1.19063 1.45056 0.94023 0.84097 0.89045 1.25321 0.95023 0.96881 0.99685 1.69972 1.33564 1.16736 1.29277 0.86193 0.78966 0.79107 0.81592 1.19646 1.20967 1.19995 1.07864 0.76234 0.75317 0.75719 1.93491 1.55498 1.63866 1.81625 1.93426 1.81462 1.52746 1.70097 1.29973 1.26870 1.12640 1.02568 1.19322 1.02141 0.94515 0.93648 1.21545 0.94003 1.00115 0.91840 1.21282 1.01021 0.94907 0.98333 1.20962 0.92228 0.94954 0.96537 1.30536 1.19475 1.25327 0.99202 1.05242 0.77028 0.75033 0.74864 1.30236 1.22687 1.14990 1.12116 1.93576 1.69022 1.85584 1.45382 1.93642 1.70261 1.85114 1.43456 1.21006 0.91000 0.94079 0.97431 0.94829 0.92054 0.93239 0.86648 0.92174 0.92211 0.84635 0.84118 0.84399 0.84528 0.83885 0.85071 0.85023 0.84844 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 10.21 37.16 0.38 -2.50 16 2 C 0.11 2.37 5.98 -4.04 -0.02 2.35 16 3 N -0.84 -20.21 2.78 -59.91 -0.17 -20.38 16 4 C -0.29 -7.33 8.78 -15.06 -0.13 -7.46 16 5 H 0.09 2.24 7.94 -52.48 -0.42 1.82 16 6 C 0.04 0.98 4.98 -17.43 -0.09 0.89 16 7 N -0.86 -22.99 11.28 55.49 0.63 -22.36 16 8 Si 0.92 19.71 29.62 -169.99 -5.03 14.68 16 9 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 S 2.55 57.65 5.37 -107.50 -0.58 57.07 16 13 O -0.96 -25.19 17.22 -57.54 -0.99 -26.18 16 14 O -0.99 -23.91 16.53 -57.54 -0.95 -24.86 16 15 C -0.60 -9.71 6.30 36.00 0.23 -9.48 16 16 C -0.09 -1.45 5.14 -104.63 -0.54 -1.99 16 17 C -0.06 -0.75 9.70 -39.58 -0.38 -1.14 16 18 C -0.14 -1.53 10.05 -39.58 -0.40 -1.93 16 19 C -0.03 -0.31 9.47 -39.58 -0.37 -0.68 16 20 C -0.66 -8.22 5.66 -39.58 -0.22 -8.45 16 21 S 2.50 26.38 5.80 -107.50 -0.62 25.75 16 22 C -0.65 -3.48 10.80 101.05 1.09 -2.39 16 23 O -0.94 -12.08 17.13 -57.54 -0.99 -13.06 16 24 O -0.93 -13.81 17.13 -57.54 -0.99 -14.80 16 25 C -0.02 -0.23 9.13 -39.58 -0.36 -0.59 16 26 H 0.03 0.51 6.98 -51.93 -0.36 0.15 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.12 2.82 5.31 -51.93 -0.28 2.54 16 30 H 0.06 1.31 6.81 -51.93 -0.35 0.96 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.14 1.85 6.92 -51.92 -0.36 1.49 16 33 H 0.14 2.04 8.09 -51.92 -0.42 1.62 16 34 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 35 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.14 1.19 7.57 -52.49 -0.40 0.79 16 37 H 0.13 0.45 8.14 -51.92 -0.42 0.02 16 38 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.13 0.58 8.14 -51.92 -0.42 0.15 16 40 H 0.15 2.12 7.57 -52.49 -0.40 1.72 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -37.76 362.67 -10.12 -47.89 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.08 Total: 4.16 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: -0.83 Total: -33.37 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.46 Total: -42.74 kcal Atomic # 8 Polarization: -75.00 SS G_CDS: -3.91 Total: -78.91 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Atomic # 16 Polarization: 84.02 SS G_CDS: -1.20 Total: 82.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.76 -10.12 -47.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659762378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.641 kcal (2) G-P(sol) polarization free energy of solvation -37.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds