Wall clock time and date at job start Wed Apr 1 2020 04:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47291 * 2 1 4 4 C 1.36934 * 119.99776 * 275.24033 * 3 2 1 5 5 H 1.08009 * 120.00257 * 146.57521 * 4 3 2 6 6 C 1.38812 * 120.00308 * 326.58025 * 4 3 2 7 7 N 1.31622 * 119.99758 * 336.13002 * 6 4 3 8 8 Si 1.86795 * 120.00481 * 156.12999 * 6 4 3 9 9 H 1.48496 * 109.47368 * 59.99670 * 8 6 4 10 10 H 1.48496 * 109.47426 * 180.02562 * 8 6 4 11 11 H 1.48511 * 109.46960 * 299.99963 * 8 6 4 12 12 S 1.65604 * 120.00474 * 95.23972 * 3 2 1 13 13 O 1.42094 * 104.27614 * 153.93071 * 12 3 2 14 14 O 1.42100 * 104.27162 * 26.06983 * 12 3 2 15 15 C 1.81397 * 104.44895 * 270.00303 * 12 3 2 16 16 C 1.50697 * 109.47346 * 179.97438 * 15 12 3 17 17 C 1.38257 * 120.00450 * 270.02439 * 16 15 12 18 18 C 1.38214 * 120.00275 * 179.97438 * 17 16 15 19 19 C 1.38253 * 120.00086 * 359.96109 * 18 17 16 20 20 C 1.38214 * 119.99845 * 0.05828 * 19 18 17 21 21 S 1.76199 * 119.99633 * 179.97438 * 20 19 18 22 22 C 1.81396 * 104.45141 * 269.95543 * 21 20 19 23 23 O 1.42098 * 104.27728 * 26.03069 * 21 20 19 24 24 O 1.42102 * 104.27749 * 153.88683 * 21 20 19 25 25 C 1.38213 * 120.00112 * 89.99155 * 16 15 12 26 26 H 1.08997 * 109.47330 * 300.00861 * 1 2 3 27 27 H 1.08998 * 109.46613 * 60.00598 * 1 2 3 28 28 H 1.08996 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47330 * 239.99139 * 2 1 3 30 30 H 1.08998 * 109.46613 * 119.99401 * 2 1 3 31 31 H 0.96990 * 119.99979 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47281 * 59.99884 * 15 12 3 33 33 H 1.09001 * 109.46937 * 299.99579 * 15 12 3 34 34 H 1.08003 * 119.99421 * 359.97289 * 17 16 15 35 35 H 1.08003 * 119.99376 * 179.97438 * 18 17 16 36 36 H 1.07993 * 119.99662 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46981 * 60.00452 * 22 21 20 38 38 H 1.09005 * 109.47245 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47631 * 300.00281 * 22 21 20 40 40 H 1.08001 * 119.99759 * 359.73146 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1445 2.0627 -1.1810 5 1 1.9695 3.1281 -1.2110 6 6 2.4972 1.3845 -2.3396 7 7 3.1522 0.2454 -2.2618 8 14 2.0422 2.0881 -4.0091 9 1 2.6694 3.4244 -4.1707 10 1 2.5287 1.1798 -5.0784 11 1 0.5661 2.2192 -4.1054 12 16 2.4179 2.1183 1.4281 13 8 3.3745 3.1021 1.0590 14 8 2.7668 1.0445 2.2910 15 6 0.8779 2.9028 1.9789 16 6 1.1160 3.6143 3.2858 17 6 0.9315 2.9446 4.4812 18 6 1.1504 3.5970 5.6799 19 6 1.5547 4.9190 5.6835 20 6 1.7388 5.5887 4.4886 21 16 2.2534 7.2738 4.4933 22 6 0.7059 8.2197 4.5218 23 8 2.9520 7.4235 5.7217 24 8 2.9172 7.4411 3.2480 25 6 1.5196 4.9361 3.2896 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.3989 -0.2283 -3.0714 32 1 0.1104 2.1408 2.1150 33 1 0.5477 3.6213 1.2287 34 1 0.6162 1.9116 4.4783 35 1 1.0058 3.0738 6.6136 36 1 1.7253 5.4289 6.6202 37 1 0.1405 7.9644 5.4181 38 1 0.9318 9.2861 4.5267 39 1 0.1153 7.9771 3.6383 40 1 1.6685 5.4579 2.3558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659762378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:24 Heat of formation + Delta-G solvation = -129.487019 kcal Electronic energy + Delta-G solvation = -26760.564395 eV Core-core repulsion = 22794.507424 eV Total energy + Delta-G solvation = -3966.056971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.50198 -38.17447 -37.94393 -37.68173 -37.00657 -36.67714 -34.28077 -33.55132 -32.39951 -30.92498 -30.28191 -28.59057 -26.47885 -24.40708 -23.54511 -22.91355 -20.38223 -19.85251 -19.05782 -18.74140 -18.17963 -17.36158 -17.26610 -17.22843 -17.02228 -16.66579 -16.33800 -15.99291 -15.45485 -15.26330 -14.62735 -14.44343 -14.22717 -14.08091 -13.94677 -13.92318 -13.77670 -13.60208 -13.33272 -13.16562 -13.10292 -13.06755 -12.94960 -12.81209 -12.61825 -12.58077 -12.52041 -12.15320 -12.11861 -12.02348 -11.91980 -11.63779 -11.49499 -10.92719 -10.43239 -9.99263 -9.54246 -8.15825 -5.90609 -0.89651 -0.67119 -0.25492 0.21254 1.50546 1.51891 1.59884 1.85957 2.12192 2.31705 2.55128 2.93330 3.01131 3.07108 3.21946 3.33170 3.42312 3.73637 3.93045 4.04507 4.09965 4.12315 4.15076 4.37264 4.41986 4.45477 4.62493 4.74637 4.75774 4.80294 4.92133 4.95537 5.00228 5.13292 5.22236 5.31686 5.51011 5.64713 5.70368 5.98137 6.51461 7.10725 7.46906 8.85614 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.003501 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.284390 B = 7995.861806 C = 8971.406566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 N -0.858 5.858 4 C -0.308 4.308 5 H 0.093 0.907 6 C -0.009 4.009 7 N -0.895 5.895 8 Si 0.977 3.023 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.256 1.256 12 S 2.539 3.461 13 O -1.010 7.010 14 O -1.016 7.016 15 C -0.557 4.557 16 C -0.127 4.127 17 C -0.068 4.068 18 C -0.133 4.133 19 C -0.024 4.024 20 C -0.665 4.665 21 S 2.497 3.503 22 C -0.615 4.615 23 O -0.969 6.969 24 O -0.985 6.985 25 C -0.039 4.039 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.267 0.733 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.638 10.849 14.803 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.027 4.027 3 N -0.689 5.689 4 C -0.442 4.442 5 H 0.111 0.889 6 C -0.212 4.212 7 N -0.536 5.536 8 Si 0.801 3.199 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.180 1.180 12 S 2.645 3.355 13 O -1.000 7.000 14 O -1.006 7.006 15 C -0.687 4.687 16 C -0.129 4.129 17 C -0.086 4.086 18 C -0.151 4.151 19 C -0.043 4.043 20 C -0.750 4.750 21 S 2.680 3.320 22 C -0.770 4.770 23 O -0.966 6.966 24 O -0.982 6.982 25 C -0.059 4.059 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.187 0.813 33 H 0.177 0.823 34 H 0.171 0.829 35 H 0.192 0.808 36 H 0.192 0.808 37 H 0.181 0.819 38 H 0.175 0.825 39 H 0.169 0.831 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.797 10.944 15.164 22.660 hybrid contribution -0.745 -0.475 -1.276 1.552 sum -13.542 10.470 13.888 22.043 Atomic orbital electron populations 1.22128 0.95092 1.02171 1.01963 1.21409 0.94518 0.83492 1.03287 1.52767 1.77538 1.21208 1.17432 1.19323 1.45417 0.94302 0.85161 0.88922 1.26171 0.94780 0.97215 1.03047 1.70103 1.35134 1.18331 1.30029 0.85248 0.79553 0.77909 0.77211 1.19923 1.21043 1.18001 1.07561 0.78103 0.74674 0.75150 1.93426 1.59594 1.64554 1.82420 1.93380 1.83331 1.53937 1.69966 1.29477 1.21882 1.13423 1.03940 1.19381 1.04802 0.95084 0.93652 1.21874 0.93913 1.00962 0.91898 1.21762 0.99356 0.94962 0.99059 1.21472 0.90458 0.95162 0.97220 1.30798 1.18718 1.26552 0.98939 1.05195 0.78988 0.74724 0.73088 1.29984 1.17720 1.14614 1.14682 1.93530 1.71697 1.85647 1.45718 1.93576 1.73601 1.85572 1.45446 1.21112 0.92062 0.94404 0.98301 0.92169 0.92611 0.90801 0.89330 0.92914 0.92313 0.81342 0.82274 0.82877 0.80801 0.80834 0.81867 0.82464 0.83062 0.84016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.20 10.21 71.98 0.73 -4.46 16 2 C 0.10 4.49 5.98 86.38 0.52 5.01 16 3 N -0.86 -42.16 2.78 -343.46 -0.95 -43.12 16 4 C -0.31 -16.16 8.78 84.03 0.74 -15.42 16 5 H 0.09 4.68 7.94 -2.91 -0.02 4.66 16 6 C -0.01 -0.45 4.98 84.86 0.42 -0.03 16 7 N -0.90 -50.10 11.28 21.65 0.24 -49.86 16 8 Si 0.98 41.09 29.62 68.60 2.03 43.12 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 12 S 2.54 117.73 5.37 -56.49 -0.30 117.43 16 13 O -1.01 -56.09 17.22 -127.65 -2.20 -58.28 16 14 O -1.02 -50.59 16.53 -127.65 -2.11 -52.70 16 15 C -0.56 -17.36 6.30 71.24 0.45 -16.91 16 16 C -0.13 -3.74 5.14 -19.87 -0.10 -3.84 16 17 C -0.07 -1.64 9.70 22.27 0.22 -1.43 16 18 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 19 C -0.02 -0.46 9.47 22.27 0.21 -0.25 16 20 C -0.67 -15.57 5.66 22.27 0.13 -15.45 16 21 S 2.50 49.52 5.80 -56.49 -0.33 49.19 16 22 C -0.62 -3.84 10.80 113.37 1.22 -2.62 16 23 O -0.97 -23.74 17.13 -127.65 -2.19 -25.93 16 24 O -0.98 -30.10 17.13 -127.65 -2.19 -32.29 16 25 C -0.04 -1.13 9.13 22.27 0.20 -0.92 16 26 H 0.06 1.67 6.98 -2.39 -0.02 1.65 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.09 4.52 5.31 -2.39 -0.01 4.50 16 30 H 0.05 2.38 6.81 -2.39 -0.02 2.36 16 31 H 0.27 14.09 8.31 -92.72 -0.77 13.32 16 32 H 0.17 4.08 6.92 -2.39 -0.02 4.06 16 33 H 0.16 4.39 8.09 -2.39 -0.02 4.37 16 34 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 35 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.17 2.21 7.57 -2.91 -0.02 2.18 16 37 H 0.16 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.16 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.14 4.16 7.57 -2.91 -0.02 4.14 16 Total: -1.00 -88.91 362.67 -1.97 -90.88 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 1.06 Total: 20.17 kcal Atomic # 6 Polarization: -63.59 SS G_CDS: 4.96 Total: -58.63 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -0.71 Total: -92.97 kcal Atomic # 8 Polarization: -160.52 SS G_CDS: -8.68 Total: -169.20 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: 167.25 SS G_CDS: -0.63 Total: 166.62 kcal Total: -88.91 -1.97 -90.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659762378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.607 kcal (2) G-P(sol) polarization free energy of solvation -88.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds