Wall clock time and date at job start Wed Apr 1 2020 05:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 119.99738 * 2 1 4 4 N 1.46500 * 109.46864 * 124.99921 * 3 2 1 5 5 C 1.46500 * 120.00037 * 274.99817 * 4 3 2 6 6 C 1.50694 * 109.47227 * 275.00244 * 5 4 3 7 7 H 1.08003 * 120.00065 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00112 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00176 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00214 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47061 * 59.99789 * 10 8 6 12 12 H 1.48495 * 109.47174 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47063 * 300.00071 * 10 8 6 14 14 S 1.65604 * 119.99942 * 94.99999 * 4 3 2 15 15 O 1.42098 * 106.40002 * 336.45949 * 14 4 3 16 16 O 1.42094 * 106.40284 * 203.53964 * 14 4 3 17 17 C 1.76194 * 107.21748 * 89.99830 * 14 4 3 18 18 C 1.38297 * 119.97309 * 269.97901 * 17 14 4 19 19 C 1.38247 * 120.11092 * 180.02562 * 18 17 14 20 20 C 1.38173 * 120.05281 * 359.67853 * 19 18 17 21 21 C 1.38708 * 119.94454 * 0.61764 * 20 19 18 22 22 O 1.35901 * 120.05358 * 179.68139 * 21 20 19 23 23 C 1.42900 * 117.00024 * 359.72168 * 22 21 20 24 24 F 1.39905 * 109.47006 * 60.00330 * 23 22 21 25 25 F 1.39900 * 109.47309 * 300.00630 * 23 22 21 26 26 C 1.38123 * 119.97458 * 90.00193 * 17 14 4 27 27 H 1.07998 * 119.99766 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00232 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00015 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47165 * 4.99938 * 3 2 1 31 31 H 1.09001 * 109.46948 * 244.99822 * 3 2 1 32 32 H 1.08998 * 109.47077 * 35.00477 * 5 4 3 33 33 H 1.09006 * 109.46680 * 155.00033 * 5 4 3 34 34 H 0.96996 * 119.99973 * 179.97438 * 9 8 6 35 35 H 1.08000 * 119.93998 * 359.97438 * 18 17 14 36 36 H 1.07992 * 119.96915 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.02036 * 180.29701 * 20 19 18 38 38 H 1.09004 * 109.47113 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.02411 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5284 1.7622 2.4523 6 6 2.5990 3.2646 2.5450 7 1 2.9553 3.8414 1.7043 8 6 2.2097 3.9029 3.7034 9 7 1.7763 3.2005 4.7274 10 14 2.2979 5.7653 3.8186 11 1 1.4357 6.3674 2.7701 12 1 1.8261 6.2013 5.1574 13 1 3.7015 6.2076 3.6195 14 16 4.5713 0.8760 0.9174 15 8 4.5923 0.0263 -0.2214 16 8 5.0503 0.4764 2.1941 17 6 5.4768 2.3217 0.4763 18 6 5.6127 2.6726 -0.8545 19 6 6.3230 3.8060 -1.2038 20 6 6.8934 4.5948 -0.2232 21 6 6.7637 4.2416 1.1119 22 8 7.3293 5.0123 2.0778 23 6 8.0486 6.1692 1.6463 24 9 7.1871 7.0189 0.9439 25 9 9.1016 5.7793 0.8118 26 6 6.0507 3.1034 1.4598 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.4983 1.4371 2.5982 33 1 3.1613 1.3204 3.2221 34 1 1.5028 3.6496 5.5425 35 1 5.1639 2.0596 -1.6221 36 1 6.4281 4.0776 -2.2437 37 1 7.4441 5.4828 -0.4964 38 1 8.4483 6.6933 2.5145 39 1 5.9449 2.8285 2.4989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663527533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:50 Heat of formation + Delta-G solvation = -163.547939 kcal Electronic energy + Delta-G solvation = -29328.660858 eV Core-core repulsion = 24807.286509 eV Total energy + Delta-G solvation = -4521.374350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.52357 -47.50695 -39.94433 -37.44386 -36.78087 -36.36604 -35.30696 -33.22441 -31.91546 -31.21041 -30.34834 -27.51927 -26.26183 -24.95159 -23.34904 -22.54374 -22.25904 -19.70924 -19.63169 -18.41882 -18.07314 -17.95069 -16.93850 -16.87531 -16.38605 -16.21811 -15.68664 -15.19175 -14.94207 -14.73246 -14.47287 -14.38178 -14.09564 -13.84057 -13.82776 -13.64071 -13.12162 -13.02387 -12.85652 -12.50959 -12.28017 -12.06906 -11.82013 -11.78476 -11.65537 -11.36224 -11.31348 -11.18018 -10.91553 -10.78647 -10.56327 -10.45545 -10.09145 -9.83934 -9.27960 -9.06931 -8.50371 -8.46898 -8.13746 -6.12487 -4.19156 0.76961 1.06991 1.36734 2.47094 2.62738 3.25790 3.28350 3.30687 3.33065 3.40781 3.74511 4.13074 4.28008 4.36151 4.47393 4.69261 4.79873 4.88069 5.09519 5.21879 5.28922 5.36406 5.46286 5.52170 5.64787 5.85500 6.08025 6.11760 6.22514 6.25347 6.28474 6.37072 6.45039 6.96700 7.05011 7.05331 7.32428 7.39587 7.58099 7.84021 8.12091 8.85457 9.47389 10.95406 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.005318 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.931871 B = 5263.668584 C = 7125.887519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.156 3.844 4 N -0.975 5.975 5 C 0.244 3.756 6 C -0.543 4.543 7 H 0.061 0.939 8 C 0.069 3.931 9 N -0.888 5.888 10 Si 0.888 3.112 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.274 1.274 14 S 2.689 3.311 15 O -0.972 6.972 16 O -0.952 6.952 17 C -0.633 4.633 18 C -0.049 4.049 19 C -0.110 4.110 20 C -0.144 4.144 21 C 0.081 3.919 22 O -0.313 6.313 23 C 0.410 3.590 24 F -0.199 7.199 25 F -0.202 7.202 26 C -0.009 4.009 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.265 0.735 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.182 0.818 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.414 3.248 -9.603 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.181 4.181 3 C 0.030 3.970 4 N -0.813 5.813 5 C 0.122 3.878 6 C -0.582 4.582 7 H 0.079 0.921 8 C -0.135 4.135 9 N -0.526 5.526 10 Si 0.716 3.284 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.200 1.200 14 S 2.778 3.222 15 O -0.962 6.962 16 O -0.943 6.943 17 C -0.717 4.717 18 C -0.068 4.068 19 C -0.129 4.129 20 C -0.163 4.163 21 C 0.037 3.963 22 O -0.231 6.231 23 C 0.319 3.681 24 F -0.181 7.181 25 F -0.184 7.184 26 C -0.029 4.029 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.199 0.801 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.701 2.451 -9.134 12.850 hybrid contribution 0.155 2.229 -0.251 2.248 sum 8.856 4.680 -9.384 13.726 Atomic orbital electron populations 1.23782 0.95794 1.01609 1.01198 1.23431 0.96332 0.99235 0.99124 1.20235 0.93144 0.95708 0.87944 1.57396 1.23438 1.82575 1.17923 1.19295 0.97333 0.94872 0.76279 1.21501 1.44966 0.91925 0.99822 0.92070 1.24894 0.94874 0.98234 0.95495 1.69918 1.42900 1.35655 1.04083 0.86706 0.78731 0.85712 0.77262 1.20214 1.21120 1.19959 1.02073 0.73100 0.73837 0.73229 1.93523 1.86980 1.63066 1.52664 1.93563 1.79991 1.80337 1.40384 1.31260 1.16280 1.23937 1.00254 1.20880 0.95792 0.95860 0.94286 1.20986 0.97950 0.94773 0.99220 1.21727 1.01518 1.01109 0.91910 1.18862 0.97428 0.92779 0.87201 1.86678 1.66128 1.36164 1.34109 1.23411 0.76169 0.80386 0.88119 1.93101 1.71625 1.71385 1.81964 1.93084 1.58338 1.91329 1.75627 1.20215 0.91782 0.90184 1.00691 0.88849 0.88384 0.87412 0.89324 0.90687 0.93734 0.92789 0.92498 0.84135 0.84809 0.84715 0.80130 0.82593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 14.32 29.01 0.42 -2.20 16 2 C -0.16 -2.55 9.84 -36.02 -0.35 -2.91 16 3 C 0.16 2.63 5.78 -5.19 -0.03 2.60 16 4 N -0.97 -19.55 2.75 -116.94 -0.32 -19.88 16 5 C 0.24 5.88 5.43 -5.20 -0.03 5.85 16 6 C -0.54 -13.99 9.38 -34.45 -0.32 -14.31 16 7 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 8 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 9 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 10 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 S 2.69 52.59 5.65 -107.50 -0.61 51.99 16 15 O -0.97 -18.72 16.25 -57.17 -0.93 -19.65 16 16 O -0.95 -21.40 15.83 -57.17 -0.91 -22.31 16 17 C -0.63 -11.42 5.97 -39.60 -0.24 -11.66 16 18 C -0.05 -0.75 9.52 -39.56 -0.38 -1.12 16 19 C -0.11 -1.51 10.04 -39.60 -0.40 -1.91 16 20 C -0.14 -2.13 8.26 -39.43 -0.33 -2.45 16 21 C 0.08 1.37 6.48 -39.22 -0.25 1.12 16 22 O -0.31 -4.79 10.43 -19.43 -0.20 -4.99 16 23 C 0.41 4.47 5.98 101.05 0.60 5.08 16 24 F -0.20 -2.51 15.57 2.25 0.04 -2.47 16 25 F -0.20 -2.28 15.60 2.25 0.04 -2.24 16 26 C -0.01 -0.17 9.46 -39.43 -0.37 -0.55 16 27 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.10 1.33 7.84 -52.49 -0.41 0.92 16 29 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.09 1.49 7.76 -51.93 -0.40 1.09 16 31 H 0.07 1.09 7.61 -51.93 -0.40 0.70 16 32 H 0.04 1.12 8.11 -51.93 -0.42 0.70 16 33 H 0.05 1.42 6.91 -51.93 -0.36 1.06 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.14 1.83 7.61 -52.49 -0.40 1.43 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.14 1.74 5.10 -52.49 -0.27 1.48 16 38 H 0.18 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.16 3.07 7.61 -52.49 -0.40 2.67 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -32.18 359.14 -7.84 -40.01 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.29 Total: 3.34 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -1.78 Total: -20.73 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.41 Total: -44.12 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -2.04 Total: -46.94 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.07 Total: -4.71 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -0.61 Total: 51.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.18 -7.84 -40.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663527533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.534 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds