Wall clock time and date at job start Wed Apr 1 2020 05:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 119.99738 * 2 1 4 4 N 1.46500 * 109.46864 * 124.99921 * 3 2 1 5 5 C 1.46500 * 120.00037 * 274.99817 * 4 3 2 6 6 C 1.50694 * 109.47227 * 275.00244 * 5 4 3 7 7 H 1.08003 * 120.00065 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00112 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00176 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00214 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47061 * 59.99789 * 10 8 6 12 12 H 1.48495 * 109.47174 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47063 * 300.00071 * 10 8 6 14 14 S 1.65604 * 119.99942 * 94.99999 * 4 3 2 15 15 O 1.42098 * 106.40002 * 336.45949 * 14 4 3 16 16 O 1.42094 * 106.40284 * 203.53964 * 14 4 3 17 17 C 1.76194 * 107.21748 * 89.99830 * 14 4 3 18 18 C 1.38297 * 119.97309 * 269.97901 * 17 14 4 19 19 C 1.38247 * 120.11092 * 180.02562 * 18 17 14 20 20 C 1.38173 * 120.05281 * 359.67853 * 19 18 17 21 21 C 1.38708 * 119.94454 * 0.61764 * 20 19 18 22 22 O 1.35901 * 120.05358 * 179.68139 * 21 20 19 23 23 C 1.42900 * 117.00024 * 359.72168 * 22 21 20 24 24 F 1.39905 * 109.47006 * 60.00330 * 23 22 21 25 25 F 1.39900 * 109.47309 * 300.00630 * 23 22 21 26 26 C 1.38123 * 119.97458 * 90.00193 * 17 14 4 27 27 H 1.07998 * 119.99766 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00232 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00015 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47165 * 4.99938 * 3 2 1 31 31 H 1.09001 * 109.46948 * 244.99822 * 3 2 1 32 32 H 1.08998 * 109.47077 * 35.00477 * 5 4 3 33 33 H 1.09006 * 109.46680 * 155.00033 * 5 4 3 34 34 H 0.96996 * 119.99973 * 179.97438 * 9 8 6 35 35 H 1.08000 * 119.93998 * 359.97438 * 18 17 14 36 36 H 1.07992 * 119.96915 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.02036 * 180.29701 * 20 19 18 38 38 H 1.09004 * 109.47113 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.02411 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5284 1.7622 2.4523 6 6 2.5990 3.2646 2.5450 7 1 2.9553 3.8414 1.7043 8 6 2.2097 3.9029 3.7034 9 7 1.7763 3.2005 4.7274 10 14 2.2979 5.7653 3.8186 11 1 1.4357 6.3674 2.7701 12 1 1.8261 6.2013 5.1574 13 1 3.7015 6.2076 3.6195 14 16 4.5713 0.8760 0.9174 15 8 4.5923 0.0263 -0.2214 16 8 5.0503 0.4764 2.1941 17 6 5.4768 2.3217 0.4763 18 6 5.6127 2.6726 -0.8545 19 6 6.3230 3.8060 -1.2038 20 6 6.8934 4.5948 -0.2232 21 6 6.7637 4.2416 1.1119 22 8 7.3293 5.0123 2.0778 23 6 8.0486 6.1692 1.6463 24 9 7.1871 7.0189 0.9439 25 9 9.1016 5.7793 0.8118 26 6 6.0507 3.1034 1.4598 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.4983 1.4371 2.5982 33 1 3.1613 1.3204 3.2221 34 1 1.5028 3.6496 5.5425 35 1 5.1639 2.0596 -1.6221 36 1 6.4281 4.0776 -2.2437 37 1 7.4441 5.4828 -0.4964 38 1 8.4483 6.6933 2.5145 39 1 5.9449 2.8285 2.4989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663527533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:50 Heat of formation + Delta-G solvation = -184.703911 kcal Electronic energy + Delta-G solvation = -29329.578250 eV Core-core repulsion = 24807.286509 eV Total energy + Delta-G solvation = -4522.291742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.41070 -48.39551 -41.11524 -38.61198 -38.36615 -37.92163 -36.93690 -34.99591 -33.53230 -32.45027 -31.54089 -29.33586 -27.19385 -26.53495 -24.65268 -24.08725 -23.68433 -20.98289 -20.82077 -19.56353 -19.20887 -18.98603 -18.64975 -18.30704 -18.03228 -17.54425 -17.17040 -16.54339 -16.30627 -16.03415 -15.79838 -15.69387 -15.17098 -15.06456 -14.97816 -14.73814 -14.64555 -14.23700 -14.15771 -13.85423 -13.80745 -13.41752 -13.36262 -13.22626 -13.06346 -12.99468 -12.97884 -12.63755 -12.48701 -12.33681 -12.31481 -11.97979 -11.77148 -11.64312 -10.59722 -10.51522 -10.28616 -9.81527 -9.68851 -8.17328 -6.30049 -0.65516 -0.32153 0.14110 1.38771 1.40725 1.41349 1.48755 1.51680 2.03108 2.34622 2.41674 2.43720 2.76298 3.14668 3.31633 3.39268 3.60971 3.63616 3.73365 3.93434 3.97600 4.08309 4.18348 4.30020 4.42229 4.63381 4.78533 4.86311 4.95883 4.99889 5.06497 5.11624 5.26077 5.30595 5.45196 5.70815 5.78138 5.81725 5.87246 6.01642 6.09568 6.81099 7.39689 8.90624 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.005318 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.931871 B = 5263.668584 C = 7125.887519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.188 4.188 3 C 0.148 3.852 4 N -0.979 5.979 5 C 0.261 3.739 6 C -0.542 4.542 7 H 0.065 0.935 8 C 0.018 3.982 9 N -0.924 5.924 10 Si 0.947 3.053 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.271 1.271 14 S 2.698 3.302 15 O -0.970 6.970 16 O -0.993 6.993 17 C -0.643 4.643 18 C -0.052 4.052 19 C -0.096 4.096 20 C -0.142 4.142 21 C 0.072 3.928 22 O -0.334 6.334 23 C 0.405 3.595 24 F -0.208 7.208 25 F -0.203 7.203 26 C -0.045 4.045 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.029 0.971 33 H 0.022 0.978 34 H 0.266 0.734 35 H 0.166 0.834 36 H 0.181 0.819 37 H 0.156 0.844 38 H 0.235 0.765 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.889 5.209 -12.083 15.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.208 4.208 3 C 0.023 3.977 4 N -0.817 5.817 5 C 0.138 3.862 6 C -0.581 4.581 7 H 0.083 0.917 8 C -0.182 4.182 9 N -0.563 5.563 10 Si 0.772 3.228 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.197 1.197 14 S 2.790 3.210 15 O -0.960 6.960 16 O -0.983 6.983 17 C -0.730 4.730 18 C -0.071 4.071 19 C -0.115 4.115 20 C -0.161 4.161 21 C 0.028 3.972 22 O -0.252 6.252 23 C 0.316 3.684 24 F -0.190 7.190 25 F -0.185 7.185 26 C -0.065 4.065 27 H 0.133 0.867 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.183 0.817 36 H 0.198 0.802 37 H 0.174 0.826 38 H 0.250 0.750 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.156 4.384 -11.635 15.441 hybrid contribution 0.064 1.629 0.432 1.686 sum 9.220 6.012 -11.203 15.706 Atomic orbital electron populations 1.24026 0.95266 1.02914 0.98355 1.23399 0.97046 0.98624 1.01734 1.20496 0.93126 0.96401 0.87653 1.57265 1.24391 1.82651 1.17373 1.18788 0.95685 0.94054 0.77715 1.21752 1.43871 0.92672 0.99790 0.91671 1.25673 0.94766 1.02472 0.95292 1.70038 1.44264 1.37374 1.04661 0.85775 0.78823 0.80716 0.77496 1.19130 1.20827 1.19659 1.01509 0.72782 0.74242 0.72467 1.93510 1.86964 1.63572 1.51987 1.93508 1.80606 1.81636 1.42586 1.30866 1.17113 1.23339 1.01709 1.21275 0.95779 0.96748 0.93320 1.21522 0.95576 0.93138 1.01229 1.22083 1.01141 1.01791 0.91063 1.18976 0.97259 0.92467 0.88530 1.86663 1.66488 1.37370 1.34689 1.24291 0.75422 0.79113 0.89602 1.93078 1.72109 1.71401 1.82379 1.93075 1.58174 1.91326 1.75939 1.20108 0.94399 0.92211 0.99744 0.86731 0.87845 0.87666 0.89444 0.88193 0.95304 0.95989 0.92504 0.81660 0.80213 0.82619 0.74957 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.48 14.32 67.78 0.97 -3.51 16 2 C -0.19 -5.84 9.84 25.65 0.25 -5.59 16 3 C 0.15 4.93 5.78 85.63 0.50 5.42 16 4 N -0.98 -40.17 2.75 -523.90 -1.44 -41.61 16 5 C 0.26 13.14 5.43 85.63 0.47 13.61 16 6 C -0.54 -28.51 9.38 25.60 0.24 -28.27 16 7 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 8 C 0.02 0.98 5.46 84.65 0.46 1.44 16 9 N -0.92 -53.44 13.29 21.45 0.28 -53.16 16 10 Si 0.95 42.67 29.54 68.60 2.03 44.69 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 S 2.70 108.28 5.65 -56.49 -0.32 107.96 16 15 O -0.97 -37.07 16.25 -128.00 -2.08 -39.14 16 16 O -0.99 -47.44 15.83 -128.00 -2.03 -49.47 16 17 C -0.64 -23.19 5.97 22.26 0.13 -23.06 16 18 C -0.05 -1.46 9.52 22.29 0.21 -1.25 16 19 C -0.10 -2.27 10.04 22.26 0.22 -2.05 16 20 C -0.14 -3.82 8.26 22.37 0.18 -3.64 16 21 C 0.07 2.38 6.48 22.50 0.15 2.53 16 22 O -0.33 -9.94 10.43 -92.44 -0.96 -10.91 16 23 C 0.40 7.83 5.98 113.37 0.68 8.51 16 24 F -0.21 -4.68 15.57 44.97 0.70 -3.98 16 25 F -0.20 -4.07 15.60 44.97 0.70 -3.37 16 26 C -0.04 -1.73 9.46 22.36 0.21 -1.52 16 27 H 0.11 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.10 2.65 7.84 -2.91 -0.02 2.62 16 29 H 0.11 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.09 2.90 7.76 -2.39 -0.02 2.88 16 31 H 0.10 2.76 7.61 -2.39 -0.02 2.74 16 32 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 33 H 0.02 1.24 6.91 -2.38 -0.02 1.23 16 34 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.17 3.75 7.61 -2.91 -0.02 3.73 16 36 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.16 3.48 5.10 -2.91 -0.01 3.47 16 38 H 0.23 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.13 5.52 7.61 -2.91 -0.02 5.50 16 Total: -1.00 -71.89 359.14 2.64 -69.25 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.08 Total: 17.12 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 4.67 Total: -37.38 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -1.16 Total: -94.77 kcal Atomic # 8 Polarization: -94.45 SS G_CDS: -5.07 Total: -99.52 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 1.40 Total: -7.35 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 108.28 SS G_CDS: -0.32 Total: 107.96 kcal Total: -71.89 2.64 -69.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663527533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.455 kcal (2) G-P(sol) polarization free energy of solvation -71.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds