Wall clock time and date at job start Wed Apr 1 2020 04:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86799 * 119.99857 * 2 1 4 4 H 1.48494 * 109.47414 * 274.98591 * 3 2 1 5 5 H 1.48498 * 109.47381 * 34.98989 * 3 2 1 6 6 H 1.48507 * 109.47033 * 154.99007 * 3 2 1 7 7 C 1.40031 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00044 * 173.67056 * 7 2 1 9 9 C 1.41329 * 120.00044 * 353.66555 * 7 2 1 10 10 C 1.40610 * 119.78749 * 186.32787 * 9 7 2 11 11 C 1.38315 * 119.12724 * 180.02562 * 10 9 7 12 12 C 1.38687 * 118.67010 * 359.72833 * 11 10 9 13 13 C 1.39645 * 119.49923 * 0.55428 * 12 11 10 14 14 N 1.39240 * 119.57690 * 179.70436 * 13 12 11 15 15 C 1.34781 * 119.99954 * 341.17227 * 14 13 12 16 16 O 1.21572 * 120.00038 * 354.20292 * 15 14 13 17 17 N 1.34780 * 119.99806 * 174.20170 * 15 14 13 18 18 C 1.46496 * 119.99863 * 179.97438 * 17 15 14 19 19 C 1.50707 * 109.47064 * 180.02562 * 18 17 15 20 20 C 1.38261 * 120.35798 * 94.99959 * 19 18 17 21 21 C 1.39411 * 118.51307 * 180.02562 * 20 19 18 22 22 O 1.35514 * 120.46373 * 180.02562 * 21 20 19 23 23 N 1.32739 * 119.07547 * 0.02562 * 21 20 19 24 24 C 1.32526 * 120.64418 * 0.02562 * 23 21 20 25 25 S 1.76192 * 119.19644 * 179.97438 * 24 23 21 26 26 N 1.32409 * 120.36256 * 275.27813 * 19 18 17 27 27 N 1.31929 * 120.84209 * 359.43527 * 13 12 11 28 28 H 0.96997 * 120.00148 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.43633 * 359.97438 * 10 9 7 30 30 H 1.07996 * 120.66410 * 180.02562 * 11 10 9 31 31 H 1.08001 * 120.25381 * 180.28328 * 12 11 10 32 32 H 0.97003 * 120.00378 * 161.16952 * 14 13 12 33 33 H 0.97005 * 119.99933 * 0.02562 * 17 15 14 34 34 H 1.08994 * 109.47117 * 60.00515 * 18 17 15 35 35 H 1.08996 * 109.47519 * 300.00377 * 18 17 15 36 36 H 1.07997 * 120.74508 * 0.02562 * 20 19 18 37 37 H 0.96698 * 114.00043 * 269.97831 * 22 21 20 38 38 H 1.40997 * 100.00349 * 89.99755 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3834 2.1073 -1.3947 5 1 1.4955 2.6200 0.8028 6 1 3.5877 1.4120 0.5919 7 6 2.0075 -1.2127 -0.0005 8 1 3.0826 -1.2155 -0.1037 9 6 1.3074 -2.4330 0.1340 10 6 2.0214 -3.6370 0.2669 11 6 1.3224 -4.8234 0.3971 12 6 -0.0638 -4.7823 0.3976 13 6 -0.7155 -3.5553 0.2560 14 7 -2.1072 -3.5129 0.2500 15 6 -2.8144 -4.6325 -0.0009 16 8 -2.2407 -5.6540 -0.3254 17 7 -4.1578 -4.6195 0.1079 18 6 -4.9266 -5.8362 -0.1654 19 6 -6.3950 -5.5562 0.0258 20 6 -7.1870 -5.2117 -1.0538 21 6 -8.5404 -4.9603 -0.8329 22 8 -9.3530 -4.6202 -1.8627 23 7 -9.0220 -5.0589 0.4001 24 6 -8.2305 -5.3908 1.4099 25 16 -8.9099 -5.5099 3.0312 26 7 -6.9395 -5.6321 1.2304 27 7 -0.0292 -2.4353 0.1330 28 1 -0.4850 0.8400 0.0004 29 1 3.1014 -3.6355 0.2666 30 1 1.8457 -5.7624 0.5012 31 1 -0.6352 -5.6928 0.5023 32 1 -2.5678 -2.6777 0.4265 33 1 -4.6156 -3.8043 0.3665 34 1 -4.6145 -6.6247 0.5195 35 1 -4.7486 -6.1555 -1.1922 36 1 -6.7668 -5.1390 -2.0459 37 1 -9.4079 -3.6681 -2.0224 38 1 -9.2890 -6.8679 3.0387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674526519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:27 Heat of formation + Delta-G solvation = 45.594857 kcal Electronic energy + Delta-G solvation = -26109.785425 eV Core-core repulsion = 22080.462125 eV Total energy + Delta-G solvation = -4029.323300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.74908 -40.08755 -38.32094 -37.89239 -35.66588 -34.26472 -33.54921 -33.13351 -32.11889 -30.40378 -29.30161 -27.47907 -25.43286 -25.32032 -23.44765 -21.95684 -21.57573 -20.37978 -19.75282 -18.76941 -18.23307 -18.00928 -17.38722 -16.84024 -16.55591 -16.13185 -15.60973 -15.29315 -15.06188 -14.76039 -14.62568 -14.35449 -14.23709 -13.65143 -13.34063 -13.17209 -12.89087 -12.69350 -12.23812 -11.99999 -11.97673 -11.28244 -11.23673 -11.11643 -11.05659 -10.90967 -10.67463 -10.14732 -10.12832 -9.98123 -9.87140 -9.38553 -9.13209 -9.06314 -8.71211 -8.03424 -7.68429 -7.07834 -6.43017 -4.50225 -0.14366 0.23467 0.70897 1.85958 2.58181 2.68161 2.82066 2.94360 3.08314 3.11730 3.13695 3.24492 3.44605 3.62463 3.91505 3.94546 4.28024 4.45448 4.50673 4.66184 4.78160 5.23509 5.25491 5.49292 5.89843 6.13905 6.21334 6.26946 6.41417 6.67594 6.73552 6.81549 6.90244 7.05018 7.18025 7.20283 7.49370 7.59732 7.90140 8.03640 8.15020 8.37931 8.69339 8.83995 8.99828 10.04425 10.30458 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.002134 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.244383 B =13115.268581 C =13787.085486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.436 4.436 8 H 0.085 0.915 9 C 0.280 3.720 10 C -0.290 4.290 11 C -0.049 4.049 12 C -0.312 4.312 13 C 0.373 3.627 14 N -0.656 5.656 15 C 0.712 3.288 16 O -0.566 6.566 17 N -0.743 5.743 18 C 0.193 3.807 19 C 0.170 3.830 20 C -0.197 4.197 21 C 0.359 3.641 22 O -0.471 6.471 23 N -0.497 5.497 24 C 0.321 3.679 25 S -0.034 6.034 26 N -0.464 5.464 27 N -0.509 5.509 28 H 0.270 0.730 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.404 0.596 33 H 0.397 0.603 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.165 0.835 37 H 0.413 0.587 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.931 -5.914 -0.097 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.154 3.846 10 C -0.313 4.313 11 C -0.074 4.074 12 C -0.336 4.336 13 C 0.138 3.862 14 N -0.302 5.302 15 C 0.412 3.588 16 O -0.442 6.442 17 N -0.401 5.401 18 C 0.068 3.932 19 C 0.021 3.979 20 C -0.221 4.221 21 C 0.168 3.832 22 O -0.280 6.280 23 N -0.224 5.224 24 C -0.057 4.057 25 S 0.119 5.881 26 N -0.182 5.182 27 N -0.228 5.228 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.239 0.761 33 H 0.231 0.769 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.183 0.817 37 H 0.273 0.727 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.828 -6.408 1.187 20.872 hybrid contribution 0.657 0.557 -1.636 1.849 sum -19.171 -5.851 -0.448 20.049 Atomic orbital electron populations 1.70115 1.07228 1.27441 1.29787 1.26029 0.94869 1.00990 0.93378 0.86333 0.80673 0.80965 0.78951 1.19598 1.20176 1.18487 1.19551 0.94635 0.89331 1.43257 0.89673 1.18165 0.86261 0.92072 0.88132 1.21711 0.98786 0.93739 1.17039 1.20809 0.93691 0.96568 0.96304 1.21607 0.94524 0.98071 1.19444 1.18181 0.81781 0.91383 0.94827 1.42207 1.05626 1.10631 1.71783 1.15621 0.80644 0.84074 0.78504 1.90859 1.68150 1.31967 1.53205 1.44883 1.05195 1.13522 1.76526 1.19940 0.81537 0.88318 1.03426 1.21857 0.97275 0.91012 0.87725 1.23124 0.93739 1.02217 1.03020 1.19567 0.86503 0.91624 0.85528 1.84733 1.67055 1.30772 1.45400 1.68637 1.40242 1.14051 0.99421 1.24098 0.87826 0.96717 0.97074 1.87179 1.77442 1.17608 1.05859 1.69001 1.12080 1.12713 1.24429 1.67994 1.08431 1.24635 1.21704 0.91917 0.88237 0.88331 0.84953 0.76095 0.76933 0.88635 0.88828 0.81748 0.72653 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.55 11.49 55.55 0.64 -17.91 16 2 C 0.07 1.79 5.49 -17.35 -0.10 1.69 16 3 Si 0.91 18.27 29.56 -169.99 -5.03 13.25 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.44 -11.54 9.13 -37.73 -0.34 -11.88 16 8 H 0.09 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.28 7.67 6.54 -85.00 -0.56 7.11 16 10 C -0.29 -7.25 9.83 -38.66 -0.38 -7.63 16 11 C -0.05 -1.16 10.15 -39.39 -0.40 -1.56 16 12 C -0.31 -7.56 8.83 -38.89 -0.34 -7.91 16 13 C 0.37 9.14 7.51 -154.99 -1.16 7.98 16 14 N -0.66 -12.86 5.42 -15.79 -0.09 -12.95 16 15 C 0.71 12.49 8.40 -86.91 -0.73 11.76 16 16 O -0.57 -11.73 13.14 5.30 0.07 -11.66 16 17 N -0.74 -9.12 5.55 -66.42 -0.37 -9.49 16 18 C 0.19 1.98 6.02 -5.19 -0.03 1.94 16 19 C 0.17 1.58 6.18 -82.33 -0.51 1.07 16 20 C -0.20 -1.49 9.78 -39.14 -0.38 -1.87 16 21 C 0.36 3.04 7.83 -16.72 -0.13 2.90 16 22 O -0.47 -3.05 13.57 -18.24 -0.25 -3.30 16 23 N -0.50 -5.13 10.42 -13.50 -0.14 -5.27 16 24 C 0.32 3.38 7.91 -90.87 -0.72 2.66 16 25 S -0.03 -0.30 26.15 -107.50 -2.81 -3.11 16 26 N -0.46 -5.01 10.33 -9.73 -0.10 -5.11 16 27 N -0.51 -13.73 7.92 -10.26 -0.08 -13.82 16 28 H 0.27 6.24 8.29 -40.82 -0.34 5.91 16 29 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 31 H 0.13 3.17 5.33 -52.50 -0.28 2.90 16 32 H 0.40 7.08 8.84 -40.82 -0.36 6.72 16 33 H 0.40 4.10 8.49 -40.82 -0.35 3.75 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.09 0.86 8.06 -51.93 -0.42 0.45 16 36 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.41 0.59 9.06 45.56 0.41 1.01 16 38 H 0.11 0.77 9.55 96.90 0.93 1.69 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -34.06 356.29 -9.88 -43.94 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -1.31 Total: 13.80 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -5.79 Total: 6.27 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -0.14 Total: -64.55 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.18 Total: -14.96 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.25 kcal Atomic # 16 Polarization: -0.30 SS G_CDS: -2.81 Total: -3.11 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.06 -9.88 -43.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674526519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.530 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds