Wall clock time and date at job start Wed Apr 1 2020 04:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86799 * 119.99857 * 2 1 4 4 H 1.48494 * 109.47414 * 274.98591 * 3 2 1 5 5 H 1.48498 * 109.47381 * 34.98989 * 3 2 1 6 6 H 1.48507 * 109.47033 * 154.99007 * 3 2 1 7 7 C 1.40031 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00044 * 173.67056 * 7 2 1 9 9 C 1.41329 * 120.00044 * 353.66555 * 7 2 1 10 10 C 1.40610 * 119.78749 * 186.32787 * 9 7 2 11 11 C 1.38315 * 119.12724 * 180.02562 * 10 9 7 12 12 C 1.38687 * 118.67010 * 359.72833 * 11 10 9 13 13 C 1.39645 * 119.49923 * 0.55428 * 12 11 10 14 14 N 1.39240 * 119.57690 * 179.70436 * 13 12 11 15 15 C 1.34781 * 119.99954 * 341.17227 * 14 13 12 16 16 O 1.21572 * 120.00038 * 354.20292 * 15 14 13 17 17 N 1.34780 * 119.99806 * 174.20170 * 15 14 13 18 18 C 1.46496 * 119.99863 * 179.97438 * 17 15 14 19 19 C 1.50707 * 109.47064 * 180.02562 * 18 17 15 20 20 C 1.38261 * 120.35798 * 94.99959 * 19 18 17 21 21 C 1.39411 * 118.51307 * 180.02562 * 20 19 18 22 22 O 1.35514 * 120.46373 * 180.02562 * 21 20 19 23 23 N 1.32739 * 119.07547 * 0.02562 * 21 20 19 24 24 C 1.32526 * 120.64418 * 0.02562 * 23 21 20 25 25 S 1.76192 * 119.19644 * 179.97438 * 24 23 21 26 26 N 1.32409 * 120.36256 * 275.27813 * 19 18 17 27 27 N 1.31929 * 120.84209 * 359.43527 * 13 12 11 28 28 H 0.96997 * 120.00148 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.43633 * 359.97438 * 10 9 7 30 30 H 1.07996 * 120.66410 * 180.02562 * 11 10 9 31 31 H 1.08001 * 120.25381 * 180.28328 * 12 11 10 32 32 H 0.97003 * 120.00378 * 161.16952 * 14 13 12 33 33 H 0.97005 * 119.99933 * 0.02562 * 17 15 14 34 34 H 1.08994 * 109.47117 * 60.00515 * 18 17 15 35 35 H 1.08996 * 109.47519 * 300.00377 * 18 17 15 36 36 H 1.07997 * 120.74508 * 0.02562 * 20 19 18 37 37 H 0.96698 * 114.00043 * 269.97831 * 22 21 20 38 38 H 1.40997 * 100.00349 * 89.99755 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3834 2.1073 -1.3947 5 1 1.4955 2.6200 0.8028 6 1 3.5877 1.4120 0.5919 7 6 2.0075 -1.2127 -0.0005 8 1 3.0826 -1.2155 -0.1037 9 6 1.3074 -2.4330 0.1340 10 6 2.0214 -3.6370 0.2669 11 6 1.3224 -4.8234 0.3971 12 6 -0.0638 -4.7823 0.3976 13 6 -0.7155 -3.5553 0.2560 14 7 -2.1072 -3.5129 0.2500 15 6 -2.8144 -4.6325 -0.0009 16 8 -2.2407 -5.6540 -0.3254 17 7 -4.1578 -4.6195 0.1079 18 6 -4.9266 -5.8362 -0.1654 19 6 -6.3950 -5.5562 0.0258 20 6 -7.1870 -5.2117 -1.0538 21 6 -8.5404 -4.9603 -0.8329 22 8 -9.3530 -4.6202 -1.8627 23 7 -9.0220 -5.0589 0.4001 24 6 -8.2305 -5.3908 1.4099 25 16 -8.9099 -5.5099 3.0312 26 7 -6.9395 -5.6321 1.2304 27 7 -0.0292 -2.4353 0.1330 28 1 -0.4850 0.8400 0.0004 29 1 3.1014 -3.6355 0.2666 30 1 1.8457 -5.7624 0.5012 31 1 -0.6352 -5.6928 0.5023 32 1 -2.5678 -2.6777 0.4265 33 1 -4.6156 -3.8043 0.3665 34 1 -4.6145 -6.6247 0.5195 35 1 -4.7486 -6.1555 -1.1922 36 1 -6.7668 -5.1390 -2.0459 37 1 -9.4079 -3.6681 -2.0224 38 1 -9.2890 -6.8679 3.0387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674526519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:27 Heat of formation + Delta-G solvation = 17.587282 kcal Electronic energy + Delta-G solvation = -26110.999925 eV Core-core repulsion = 22080.462125 eV Total energy + Delta-G solvation = -4030.537800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.45651 -41.56619 -39.71890 -38.82468 -36.73652 -35.91437 -35.12004 -34.26737 -32.85802 -32.29536 -31.02740 -28.53180 -27.27865 -26.01722 -24.39260 -23.47976 -23.34205 -21.88440 -20.50051 -19.85516 -19.34108 -19.09652 -18.63857 -18.23882 -17.40026 -17.04814 -16.77946 -16.65740 -16.29086 -16.17659 -15.99348 -15.67467 -15.27752 -15.04150 -14.62540 -14.48169 -14.24353 -13.90269 -13.77360 -13.27868 -12.91731 -12.88461 -12.65473 -12.61526 -12.55228 -11.93020 -11.83602 -11.73396 -11.58222 -11.07418 -10.87269 -10.79351 -10.63300 -10.28816 -9.93867 -9.60475 -9.38494 -8.91284 -8.28961 -6.47042 -0.80851 -0.45228 0.03717 0.84463 1.15436 1.23287 1.44803 1.53154 1.55819 1.59983 2.09933 2.14991 2.26471 2.34943 2.67420 2.91055 3.17187 3.23187 3.65176 3.88666 3.95097 4.03108 4.35243 4.43643 4.51211 4.66559 4.80843 4.90585 4.95393 4.98392 5.25419 5.28006 5.54055 5.58758 5.71069 5.83940 6.00601 6.22169 6.31325 6.37972 6.53029 6.75440 6.88570 7.02291 7.45543 8.13486 8.47293 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.002134 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.244383 B =13115.268581 C =13787.085486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.027 3.973 3 Si 0.987 3.013 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.466 4.466 8 H 0.091 0.909 9 C 0.246 3.754 10 C -0.310 4.310 11 C -0.048 4.048 12 C -0.324 4.324 13 C 0.366 3.634 14 N -0.655 5.655 15 C 0.714 3.286 16 O -0.597 6.597 17 N -0.720 5.720 18 C 0.195 3.805 19 C 0.165 3.835 20 C -0.180 4.180 21 C 0.360 3.640 22 O -0.474 6.474 23 N -0.513 5.513 24 C 0.310 3.690 25 S -0.047 6.047 26 N -0.484 5.484 27 N -0.535 5.535 28 H 0.279 0.721 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.137 0.863 32 H 0.412 0.588 33 H 0.409 0.591 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.192 0.808 37 H 0.434 0.566 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.713 -5.329 -0.770 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.498 4.498 8 H 0.109 0.891 9 C 0.120 3.880 10 C -0.332 4.332 11 C -0.072 4.072 12 C -0.349 4.349 13 C 0.130 3.870 14 N -0.302 5.302 15 C 0.414 3.586 16 O -0.476 6.476 17 N -0.378 5.378 18 C 0.071 3.929 19 C 0.017 3.983 20 C -0.204 4.204 21 C 0.169 3.831 22 O -0.286 6.286 23 N -0.241 5.241 24 C -0.068 4.068 25 S 0.106 5.894 26 N -0.202 5.202 27 N -0.254 5.254 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.249 0.751 33 H 0.245 0.755 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.209 0.791 37 H 0.299 0.701 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.684 -5.819 0.510 21.493 hybrid contribution 0.742 0.288 -1.469 1.671 sum -19.942 -5.531 -0.959 20.717 Atomic orbital electron populations 1.70182 1.08721 1.28994 1.29571 1.26927 0.95790 1.04298 0.92456 0.85130 0.79130 0.75870 0.79170 1.18909 1.19257 1.18114 1.19920 0.95192 0.90270 1.44439 0.89140 1.18675 0.87076 0.93381 0.88906 1.21881 0.99541 0.93728 1.18084 1.21173 0.93709 0.97484 0.94870 1.21826 0.95078 0.98217 1.19796 1.18502 0.83626 0.91046 0.93848 1.42115 1.04178 1.11837 1.72059 1.15685 0.81919 0.82921 0.78098 1.90823 1.69311 1.32792 1.54627 1.44682 1.03325 1.14913 1.74832 1.20038 0.81871 0.86905 1.04120 1.21681 0.96688 0.91940 0.88029 1.23297 0.93157 1.00349 1.03596 1.19716 0.86977 0.91074 0.85342 1.84704 1.66586 1.32894 1.44411 1.68649 1.40657 1.14599 1.00191 1.24204 0.87817 0.97222 0.97572 1.87139 1.77411 1.19254 1.05565 1.68946 1.12456 1.13467 1.25373 1.68021 1.08658 1.25731 1.23017 0.91051 0.86962 0.85193 0.84598 0.75115 0.75494 0.89527 0.87209 0.79083 0.70132 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.77 11.49 21.84 0.25 -38.52 16 2 C 0.03 1.35 5.49 85.29 0.47 1.82 16 3 Si 0.99 37.11 29.56 68.60 2.03 39.14 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 6 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 7 C -0.47 -25.07 9.13 23.47 0.21 -24.85 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.25 13.75 6.54 40.20 0.26 14.02 16 10 C -0.31 -15.67 9.83 22.87 0.22 -15.45 16 11 C -0.05 -2.25 10.15 22.40 0.23 -2.03 16 12 C -0.32 -15.82 8.83 22.72 0.20 -15.62 16 13 C 0.37 18.15 7.51 133.25 1.00 19.15 16 14 N -0.65 -25.68 5.42 -322.14 -1.75 -27.43 16 15 C 0.71 24.62 8.40 179.05 1.50 26.12 16 16 O -0.60 -24.52 13.14 -3.94 -0.05 -24.58 16 17 N -0.72 -16.72 5.55 -482.31 -2.68 -19.40 16 18 C 0.20 3.69 6.02 85.64 0.52 4.20 16 19 C 0.16 2.77 6.18 42.48 0.26 3.03 16 20 C -0.18 -2.27 9.78 22.56 0.22 -2.05 16 21 C 0.36 5.33 7.83 84.84 0.66 6.00 16 22 O -0.47 -4.96 13.57 -88.16 -1.20 -6.15 16 23 N -0.51 -9.93 10.42 -309.34 -3.22 -13.16 16 24 C 0.31 6.25 7.91 180.43 1.43 7.67 16 25 S -0.05 -0.80 26.15 -56.49 -1.48 -2.27 16 26 N -0.48 -9.96 10.33 -184.71 -1.91 -11.87 16 27 N -0.53 -29.42 7.92 -186.38 -1.48 -30.90 16 28 H 0.28 12.84 8.29 -92.71 -0.77 12.07 16 29 H 0.11 5.20 8.06 -2.91 -0.02 5.17 16 30 H 0.13 5.13 8.06 -2.91 -0.02 5.10 16 31 H 0.14 6.52 5.33 -3.15 -0.02 6.51 16 32 H 0.41 14.44 8.84 -92.71 -0.82 13.62 16 33 H 0.41 7.81 8.49 -92.70 -0.79 7.03 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.11 1.78 8.06 -2.39 -0.02 1.76 16 36 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.43 0.11 9.06 -74.06 -0.67 -0.56 16 38 H 0.13 1.68 9.55 73.80 0.70 2.39 16 Total: -1.00 -74.26 356.29 -4.65 -78.91 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -0.37 Total: 34.21 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 7.19 Total: 22.01 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -10.78 Total: -141.28 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -1.25 Total: -30.73 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -1.48 Total: -2.27 kcal Total: -74.26 -4.65 -78.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674526519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.498 kcal (2) G-P(sol) polarization free energy of solvation -74.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds