Wall clock time and date at job start Wed Apr 1 2020 04:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99922 * 2 1 4 4 H 1.48496 * 109.47621 * 269.99778 * 3 2 1 5 5 H 1.48505 * 109.47243 * 30.00288 * 3 2 1 6 6 H 1.48500 * 109.47041 * 149.99851 * 3 2 1 7 7 C 1.37879 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00212 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99547 * 0.02562 * 7 2 1 10 10 O 1.42903 * 113.41250 * 313.19434 * 9 7 2 11 11 C 1.53498 * 114.20291 * 179.97438 * 9 7 2 12 12 N 1.47067 * 87.98316 * 220.34260 * 11 9 7 13 13 C 1.34781 * 136.05806 * 207.08867 * 12 11 9 14 14 O 1.21589 * 119.99787 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99878 * 179.97438 * 13 12 11 16 16 C 1.39605 * 119.99801 * 185.61771 * 15 13 12 17 17 C 1.37880 * 120.31120 * 24.83236 * 16 15 13 18 18 C 1.39108 * 120.65100 * 180.02562 * 17 16 15 19 19 C 1.36272 * 121.14775 * 0.02562 * 18 17 16 20 20 Cl 1.73609 * 119.98173 * 179.97438 * 19 18 17 21 21 C 1.40591 * 120.02762 * 359.97344 * 19 18 17 22 22 N 1.33736 * 120.99095 * 179.97438 * 21 19 18 23 23 C 1.31107 * 121.32344 * 179.97438 * 22 21 19 24 24 C 1.39267 * 121.73165 * 0.04461 * 23 22 21 25 25 C 1.36667 * 119.91769 * 359.97438 * 24 23 22 26 26 C 1.40550 * 118.17210 * 359.97438 * 25 24 23 27 27 C 1.47065 * 87.88742 * 27.34175 * 12 11 9 28 28 H 0.96997 * 119.99741 * 359.97438 * 1 2 3 29 29 H 0.96697 * 113.99559 * 46.80212 * 10 9 7 30 30 H 1.09002 * 113.46699 * 105.56303 * 11 9 7 31 31 H 1.08995 * 113.46875 * 335.11840 * 11 9 7 32 32 H 0.97000 * 120.00163 * 5.62092 * 15 13 12 33 33 H 1.08001 * 119.67354 * 0.29718 * 17 16 15 34 34 H 1.07996 * 119.42591 * 179.97438 * 18 17 16 35 35 H 1.07995 * 119.13736 * 180.02562 * 23 22 21 36 36 H 1.08005 * 120.03942 * 179.97438 * 24 23 22 37 37 H 1.08003 * 120.91572 * 180.02562 * 25 24 23 38 38 H 1.08996 * 113.46839 * 87.43174 * 27 12 11 39 39 H 1.08993 * 113.47054 * 217.87970 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.1895 -2.5418 0.9562 11 6 2.1489 -3.7442 0.0005 12 7 1.2100 -4.3574 -0.9509 13 6 0.8355 -5.6114 -1.2731 14 8 1.3320 -6.5608 -0.6983 15 7 -0.0894 -5.8129 -2.2325 16 6 -0.5634 -7.1014 -2.4855 17 6 -0.5191 -8.0650 -1.5003 18 6 -0.9890 -9.3513 -1.7448 19 6 -1.5037 -9.6948 -2.9590 20 17 -2.0810 -11.3093 -3.2312 21 6 -1.5673 -8.7423 -3.9911 22 7 -2.0682 -9.0586 -5.1901 23 6 -2.1311 -8.1754 -6.1570 24 6 -1.6807 -6.8687 -5.9860 25 6 -1.1571 -6.4799 -4.7850 26 6 -1.0924 -7.4294 -3.7507 27 6 0.8644 -3.0005 -1.4006 28 1 -0.4849 0.8400 0.0004 29 1 -0.3741 -1.7561 0.9532 30 1 2.1852 -4.2531 0.9637 31 1 3.1385 -3.5657 -0.4201 32 1 -0.4257 -5.0626 -2.7473 33 1 -0.1196 -7.8176 -0.5279 34 1 -0.9444 -10.0908 -0.9590 35 1 -2.5427 -8.4690 -7.1114 36 1 -1.7453 -6.1635 -6.8015 37 1 -0.8034 -5.4706 -4.6345 38 1 1.5154 -2.6260 -2.1905 39 1 -0.1936 -2.8759 -1.6311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771789411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:17 Heat of formation + Delta-G solvation = 23.492924 kcal Electronic energy + Delta-G solvation = -27140.304326 eV Core-core repulsion = 23075.686157 eV Total energy + Delta-G solvation = -4064.618169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32131 -40.05894 -38.43924 -37.14880 -36.32774 -34.77610 -34.18094 -32.72758 -32.31145 -30.79736 -29.71262 -28.04611 -25.47784 -25.28895 -24.49318 -24.02084 -22.21051 -20.59712 -19.41416 -18.70204 -18.14599 -17.51833 -17.14533 -16.67226 -16.32127 -15.44748 -15.29716 -15.05810 -14.85408 -14.67399 -14.46806 -14.22775 -13.58733 -13.57877 -13.29925 -12.84953 -12.81062 -12.56564 -12.51892 -12.26859 -11.96677 -11.68270 -11.62492 -11.18368 -11.11796 -10.86985 -10.60040 -10.47840 -10.40059 -10.05715 -9.91825 -9.75557 -9.43108 -9.00879 -8.91763 -8.58591 -8.11872 -7.62057 -6.52376 -4.63029 0.15989 0.59779 1.68572 2.12831 2.57972 2.72991 3.06322 3.15753 3.18814 3.40543 3.89943 3.98107 4.03037 4.10736 4.45821 4.48347 4.58865 4.71539 4.73412 5.03725 5.22806 5.34511 5.36617 5.41860 5.66728 5.69274 5.80205 5.89371 5.96033 6.07996 6.21175 6.23905 6.27889 6.38222 6.39491 6.48531 6.77891 6.92971 7.26975 7.51326 7.66136 7.66801 8.33724 8.41441 8.71504 9.08940 9.35829 10.54372 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020631 B = 0.002461 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.837944 B =11376.702395 C =12280.027488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.244 3.756 10 O -0.569 6.569 11 C 0.129 3.871 12 N -0.648 5.648 13 C 0.727 3.273 14 O -0.582 6.582 15 N -0.677 5.677 16 C 0.211 3.789 17 C -0.138 4.138 18 C -0.054 4.054 19 C -0.052 4.052 20 Cl -0.057 7.057 21 C 0.154 3.846 22 N -0.464 5.464 23 C 0.136 3.864 24 C -0.178 4.178 25 C -0.050 4.050 26 C -0.116 4.116 27 C 0.066 3.934 28 H 0.275 0.725 29 H 0.395 0.605 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.408 0.592 33 H 0.165 0.835 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 -10.741 -10.278 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.737 3.263 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.092 0.908 9 C 0.201 3.799 10 O -0.383 6.383 11 C 0.006 3.994 12 N -0.383 5.383 13 C 0.432 3.568 14 O -0.461 6.461 15 N -0.321 5.321 16 C 0.111 3.889 17 C -0.160 4.160 18 C -0.075 4.075 19 C -0.081 4.081 20 Cl -0.028 7.028 21 C 0.032 3.968 22 N -0.172 5.172 23 C -0.037 4.037 24 C -0.198 4.198 25 C -0.076 4.076 26 C -0.121 4.121 27 C -0.056 4.056 28 H 0.085 0.915 29 H 0.251 0.749 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.244 0.756 33 H 0.182 0.818 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.101 0.899 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.225 -12.996 -9.760 16.793 hybrid contribution 0.207 2.613 -0.595 2.688 sum -4.018 -10.383 -10.355 15.205 Atomic orbital electron populations 1.69253 1.06230 1.28368 1.49959 1.25087 0.95043 1.00029 0.92880 0.86287 0.79846 0.81741 0.78421 1.20280 1.20830 1.19442 1.21411 0.93981 0.89579 1.52290 0.90785 1.19535 0.85414 0.90991 0.83925 1.86057 1.44928 1.48379 1.58889 1.23299 0.93263 0.91320 0.91486 1.48929 1.44757 1.02919 1.41732 1.15213 0.79342 0.82488 0.79803 1.90840 1.59378 1.39738 1.56184 1.42583 1.43019 1.07536 1.38971 1.17446 0.94442 0.85273 0.91701 1.21442 1.01886 0.91755 1.00912 1.20742 0.94794 0.96750 0.95196 1.20256 1.06379 0.86923 0.94533 1.98345 1.87447 1.20178 1.96795 1.18169 0.96729 0.90035 0.91890 1.68166 1.14389 1.35233 0.99420 1.22988 0.93825 0.89230 0.97619 1.21852 1.01270 0.98224 0.98464 1.21283 0.95148 0.98845 0.92362 1.18407 1.05034 0.94995 0.93634 1.24365 1.00280 0.77670 1.03333 0.91474 0.74878 0.91188 0.89516 0.75633 0.81822 0.84006 0.82153 0.84211 0.84561 0.89921 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.42 11.01 55.43 0.61 -20.81 16 2 C 0.07 1.69 5.40 -17.82 -0.10 1.60 16 3 Si 0.91 18.39 29.54 -169.99 -5.02 13.37 16 4 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.53 -12.47 8.69 -34.44 -0.30 -12.77 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.24 5.40 1.59 -91.12 -0.14 5.25 16 10 O -0.57 -13.82 13.55 -35.23 -0.48 -14.29 16 11 C 0.13 2.58 8.03 -8.50 -0.07 2.51 16 12 N -0.65 -12.47 3.69 -190.83 -0.70 -13.18 16 13 C 0.73 13.72 8.59 -86.91 -0.75 12.98 16 14 O -0.58 -12.31 14.30 5.29 0.08 -12.24 16 15 N -0.68 -10.33 5.18 -14.01 -0.07 -10.40 16 16 C 0.21 3.14 6.44 -83.40 -0.54 2.60 16 17 C -0.14 -2.08 8.70 -39.39 -0.34 -2.42 16 18 C -0.05 -0.70 9.70 -39.97 -0.39 -1.09 16 19 C -0.05 -0.71 6.33 -39.40 -0.25 -0.96 16 20 Cl -0.06 -0.71 28.50 -51.86 -1.48 -2.19 16 21 C 0.15 2.15 6.60 -84.84 -0.56 1.59 16 22 N -0.46 -6.02 9.81 -10.98 -0.11 -6.13 16 23 C 0.14 1.32 11.14 -17.48 -0.19 1.13 16 24 C -0.18 -1.57 10.03 -39.77 -0.40 -1.97 16 25 C -0.05 -0.53 9.55 -39.28 -0.38 -0.91 16 26 C -0.12 -1.56 5.75 -106.67 -0.61 -2.17 16 27 C 0.07 1.28 7.73 -8.36 -0.06 1.21 16 28 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 29 H 0.39 9.73 6.33 45.56 0.29 10.02 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.09 1.58 8.10 -51.93 -0.42 1.16 16 32 H 0.41 5.29 7.00 -40.82 -0.29 5.01 16 33 H 0.16 2.75 5.77 -52.49 -0.30 2.45 16 34 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.14 1.20 6.77 -52.48 -0.36 0.85 16 38 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -27.90 349.78 -10.14 -38.03 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -3.16 Total: 15.98 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -5.08 Total: 6.59 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.27 Total: -50.51 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.40 Total: -26.53 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.02 Total: 13.37 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.48 Total: -2.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.90 -10.14 -38.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771789411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.525 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds