Wall clock time and date at job start Wed Apr 1 2020 04:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99922 * 2 1 4 4 H 1.48496 * 109.47621 * 269.99778 * 3 2 1 5 5 H 1.48505 * 109.47243 * 30.00288 * 3 2 1 6 6 H 1.48500 * 109.47041 * 149.99851 * 3 2 1 7 7 C 1.37879 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00212 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99547 * 0.02562 * 7 2 1 10 10 O 1.42903 * 113.41250 * 313.19434 * 9 7 2 11 11 C 1.53498 * 114.20291 * 179.97438 * 9 7 2 12 12 N 1.47067 * 87.98316 * 220.34260 * 11 9 7 13 13 C 1.34781 * 136.05806 * 207.08867 * 12 11 9 14 14 O 1.21589 * 119.99787 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99878 * 179.97438 * 13 12 11 16 16 C 1.39605 * 119.99801 * 185.61771 * 15 13 12 17 17 C 1.37880 * 120.31120 * 24.83236 * 16 15 13 18 18 C 1.39108 * 120.65100 * 180.02562 * 17 16 15 19 19 C 1.36272 * 121.14775 * 0.02562 * 18 17 16 20 20 Cl 1.73609 * 119.98173 * 179.97438 * 19 18 17 21 21 C 1.40591 * 120.02762 * 359.97344 * 19 18 17 22 22 N 1.33736 * 120.99095 * 179.97438 * 21 19 18 23 23 C 1.31107 * 121.32344 * 179.97438 * 22 21 19 24 24 C 1.39267 * 121.73165 * 0.04461 * 23 22 21 25 25 C 1.36667 * 119.91769 * 359.97438 * 24 23 22 26 26 C 1.40550 * 118.17210 * 359.97438 * 25 24 23 27 27 C 1.47065 * 87.88742 * 27.34175 * 12 11 9 28 28 H 0.96997 * 119.99741 * 359.97438 * 1 2 3 29 29 H 0.96697 * 113.99559 * 46.80212 * 10 9 7 30 30 H 1.09002 * 113.46699 * 105.56303 * 11 9 7 31 31 H 1.08995 * 113.46875 * 335.11840 * 11 9 7 32 32 H 0.97000 * 120.00163 * 5.62092 * 15 13 12 33 33 H 1.08001 * 119.67354 * 0.29718 * 17 16 15 34 34 H 1.07996 * 119.42591 * 179.97438 * 18 17 16 35 35 H 1.07995 * 119.13736 * 180.02562 * 23 22 21 36 36 H 1.08005 * 120.03942 * 179.97438 * 24 23 22 37 37 H 1.08003 * 120.91572 * 180.02562 * 25 24 23 38 38 H 1.08996 * 113.46839 * 87.43174 * 27 12 11 39 39 H 1.08993 * 113.47054 * 217.87970 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.1895 -2.5418 0.9562 11 6 2.1489 -3.7442 0.0005 12 7 1.2100 -4.3574 -0.9509 13 6 0.8355 -5.6114 -1.2731 14 8 1.3320 -6.5608 -0.6983 15 7 -0.0894 -5.8129 -2.2325 16 6 -0.5634 -7.1014 -2.4855 17 6 -0.5191 -8.0650 -1.5003 18 6 -0.9890 -9.3513 -1.7448 19 6 -1.5037 -9.6948 -2.9590 20 17 -2.0810 -11.3093 -3.2312 21 6 -1.5673 -8.7423 -3.9911 22 7 -2.0682 -9.0586 -5.1901 23 6 -2.1311 -8.1754 -6.1570 24 6 -1.6807 -6.8687 -5.9860 25 6 -1.1571 -6.4799 -4.7850 26 6 -1.0924 -7.4294 -3.7507 27 6 0.8644 -3.0005 -1.4006 28 1 -0.4849 0.8400 0.0004 29 1 -0.3741 -1.7561 0.9532 30 1 2.1852 -4.2531 0.9637 31 1 3.1385 -3.5657 -0.4201 32 1 -0.4257 -5.0626 -2.7473 33 1 -0.1196 -7.8176 -0.5279 34 1 -0.9444 -10.0908 -0.9590 35 1 -2.5427 -8.4690 -7.1114 36 1 -1.7453 -6.1635 -6.8015 37 1 -0.8034 -5.4706 -4.6345 38 1 1.5154 -2.6260 -2.1905 39 1 -0.1936 -2.8759 -1.6311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771789411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:16 Heat of formation + Delta-G solvation = 5.726875 kcal Electronic energy + Delta-G solvation = -27141.074720 eV Core-core repulsion = 23075.686157 eV Total energy + Delta-G solvation = -4065.388563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.40116 -41.40066 -39.86971 -38.20012 -37.45954 -35.99575 -35.86287 -34.11946 -33.70606 -31.71875 -31.04066 -29.41454 -27.12768 -26.85471 -25.40844 -24.98235 -23.40950 -21.96575 -20.87432 -19.74486 -19.63764 -18.94594 -18.31269 -17.77882 -17.52599 -17.05381 -16.71421 -16.47736 -15.87160 -15.83210 -15.75323 -15.41669 -15.16644 -14.56827 -14.49032 -14.26440 -14.13682 -13.86978 -13.58431 -13.47090 -13.40367 -13.10477 -12.81117 -12.74100 -12.64142 -12.23923 -12.17458 -11.90494 -11.57768 -11.37393 -11.12683 -11.00371 -10.69834 -10.62357 -10.27346 -9.94065 -9.67947 -8.73796 -8.27678 -6.44039 -0.78761 -0.32385 0.72844 1.08158 1.26026 1.47730 1.53035 1.60969 1.67657 2.07195 2.40181 2.64407 2.94317 2.96574 3.16198 3.54972 3.63746 3.65817 3.70153 3.93141 4.04033 4.15013 4.32694 4.37270 4.43112 4.53544 4.60938 4.64675 4.79405 4.82686 4.88098 4.92310 4.98525 5.14448 5.18514 5.22800 5.48525 5.69853 5.73474 5.88929 6.00012 6.62404 6.80811 6.86053 7.25364 7.31251 7.49094 8.78253 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020631 B = 0.002461 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.837944 B =11376.702395 C =12280.027488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.034 3.966 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.220 3.780 10 O -0.585 6.585 11 C 0.130 3.870 12 N -0.649 5.649 13 C 0.725 3.275 14 O -0.610 6.610 15 N -0.664 5.664 16 C 0.196 3.804 17 C -0.153 4.153 18 C -0.056 4.056 19 C -0.057 4.057 20 Cl -0.050 7.050 21 C 0.137 3.863 22 N -0.491 5.491 23 C 0.140 3.860 24 C -0.158 4.158 25 C -0.064 4.064 26 C -0.124 4.124 27 C 0.083 3.917 28 H 0.276 0.724 29 H 0.389 0.611 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.419 0.581 33 H 0.142 0.858 34 H 0.159 0.841 35 H 0.199 0.801 36 H 0.181 0.819 37 H 0.154 0.846 38 H 0.099 0.901 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 -10.223 -13.004 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.167 4.167 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.094 0.906 9 C 0.179 3.821 10 O -0.398 6.398 11 C 0.007 3.993 12 N -0.385 5.385 13 C 0.429 3.571 14 O -0.491 6.491 15 N -0.309 5.309 16 C 0.097 3.903 17 C -0.175 4.175 18 C -0.077 4.077 19 C -0.086 4.086 20 Cl -0.021 7.021 21 C 0.015 3.985 22 N -0.199 5.199 23 C -0.032 4.032 24 C -0.178 4.178 25 C -0.090 4.090 26 C -0.128 4.128 27 C -0.039 4.039 28 H 0.086 0.914 29 H 0.245 0.755 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.257 0.743 33 H 0.159 0.841 34 H 0.177 0.823 35 H 0.216 0.784 36 H 0.198 0.802 37 H 0.171 0.829 38 H 0.117 0.883 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.518 -12.495 -12.515 18.253 hybrid contribution 0.220 2.384 0.132 2.398 sum -4.299 -10.112 -12.382 16.554 Atomic orbital electron populations 1.69316 1.07107 1.28941 1.50365 1.25730 0.95722 1.02574 0.92668 0.85384 0.78470 0.78323 0.78434 1.19612 1.21189 1.19552 1.21641 0.94258 0.90325 1.52503 0.90561 1.19820 0.85507 0.91574 0.85222 1.86045 1.45514 1.48140 1.60117 1.23292 0.94056 0.90431 0.91500 1.48837 1.44801 1.03155 1.41727 1.15329 0.79729 0.81855 0.80195 1.90827 1.60511 1.40424 1.57361 1.42312 1.42145 1.08326 1.38098 1.17587 0.95315 0.84818 0.92595 1.21315 1.03000 0.92957 1.00266 1.20805 0.94697 0.96367 0.95809 1.20420 1.06113 0.87380 0.94708 1.98339 1.87330 1.19615 1.96768 1.18351 0.97315 0.90275 0.92600 1.68223 1.15521 1.36564 0.99628 1.23754 0.92078 0.89234 0.98090 1.22312 0.98470 0.98424 0.98579 1.21587 0.95731 0.99203 0.92434 1.18504 1.05103 0.95614 0.93627 1.24146 1.00690 0.77199 1.01899 0.91382 0.75472 0.92513 0.87552 0.74324 0.84081 0.82314 0.78419 0.80155 0.82856 0.88308 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -43.52 11.01 21.45 0.24 -43.29 16 2 C 0.03 1.55 5.40 84.65 0.46 2.01 16 3 Si 0.97 37.07 29.54 68.60 2.03 39.09 16 4 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.29 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.55 -25.38 8.69 25.60 0.22 -25.16 16 8 H 0.08 3.40 7.81 -2.91 -0.02 3.38 16 9 C 0.22 9.77 1.59 -11.12 -0.02 9.75 16 10 O -0.59 -28.92 13.55 -148.98 -2.02 -30.94 16 11 C 0.13 5.23 8.03 83.18 0.67 5.90 16 12 N -0.65 -24.92 3.69 -876.41 -3.23 -28.15 16 13 C 0.72 27.60 8.59 179.05 1.54 29.14 16 14 O -0.61 -26.54 14.30 -4.00 -0.06 -26.60 16 15 N -0.66 -20.11 5.18 -316.51 -1.64 -21.75 16 16 C 0.20 5.84 6.44 38.50 0.25 6.09 16 17 C -0.15 -4.80 8.70 22.39 0.19 -4.60 16 18 C -0.06 -1.49 9.70 22.02 0.21 -1.28 16 19 C -0.06 -1.55 6.33 22.39 0.14 -1.41 16 20 Cl -0.05 -1.21 28.50 -2.72 -0.08 -1.29 16 21 C 0.14 3.69 6.60 40.27 0.27 3.95 16 22 N -0.49 -11.73 9.81 -188.66 -1.85 -13.58 16 23 C 0.14 2.22 11.14 85.05 0.95 3.16 16 24 C -0.16 -2.13 10.03 22.15 0.22 -1.91 16 25 C -0.06 -1.19 9.55 22.47 0.21 -0.98 16 26 C -0.12 -3.20 5.75 -21.19 -0.12 -3.32 16 27 C 0.08 3.13 7.73 83.27 0.64 3.78 16 28 H 0.28 12.49 8.31 -92.71 -0.77 11.72 16 29 H 0.39 19.60 6.33 -74.06 -0.47 19.13 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 31 H 0.11 3.80 8.10 -2.39 -0.02 3.79 16 32 H 0.42 10.44 7.00 -92.71 -0.65 9.79 16 33 H 0.14 5.05 5.77 -2.91 -0.02 5.04 16 34 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.15 2.26 6.77 -2.91 -0.02 2.24 16 38 H 0.10 3.39 8.10 -2.39 -0.02 3.37 16 39 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -60.80 349.78 -0.75 -61.55 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: 0.03 Total: 39.84 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: 5.84 Total: 25.12 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -6.48 Total: -106.78 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -2.08 Total: -57.54 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.09 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -60.80 -0.75 -61.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771789411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.279 kcal (2) G-P(sol) polarization free energy of solvation -60.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds