Wall clock time and date at job start Wed Apr 1 2020 04:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 S 1.65606 * 134.45609 * 204.64192 * 12 11 9 14 14 O 1.42105 * 104.27298 * 25.93867 * 13 12 11 15 15 O 1.42102 * 104.27712 * 153.79676 * 13 12 11 16 16 C 1.81395 * 104.44852 * 269.87090 * 13 12 11 17 17 C 1.53000 * 109.47296 * 179.97438 * 16 13 12 18 18 C 1.50696 * 109.47660 * 179.97438 * 17 16 13 19 19 C 1.38415 * 120.02618 * 269.72628 * 18 17 16 20 20 F 1.35104 * 120.01270 * 359.97438 * 19 18 17 21 21 C 1.38475 * 119.97595 * 179.78968 * 19 18 17 22 22 C 1.38212 * 120.02547 * 0.48249 * 21 19 18 23 23 C 1.38208 * 120.04495 * 359.74852 * 22 21 19 24 24 C 1.38416 * 120.02444 * 89.99730 * 18 17 16 25 25 F 1.35101 * 120.01274 * 0.02562 * 24 18 17 26 26 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 29 29 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 30 30 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 31 31 H 1.08998 * 109.47389 * 299.99532 * 16 13 12 32 32 H 1.08999 * 109.47297 * 59.99691 * 16 13 12 33 33 H 1.09002 * 109.47225 * 300.00352 * 17 16 13 34 34 H 1.09007 * 109.46840 * 59.99498 * 17 16 13 35 35 H 1.07995 * 119.99155 * 180.22754 * 21 19 18 36 36 H 1.07997 * 119.97761 * 179.76850 * 22 21 19 37 37 H 1.08005 * 119.98374 * 180.02562 * 23 22 21 38 38 H 1.08993 * 113.76952 * 221.15022 * 26 12 11 39 39 H 1.08995 * 113.86700 * 89.76371 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 16 0.7628 -5.8183 1.4859 14 8 -0.5750 -5.6807 1.9448 15 8 1.0719 -6.6316 0.3624 16 6 1.8747 -6.1941 2.8690 17 6 1.5730 -7.5972 3.3992 18 6 2.4971 -7.9097 4.5478 19 6 3.7166 -8.5196 4.3095 20 9 4.0789 -8.8356 3.0469 21 6 4.5668 -8.8023 5.3653 22 6 4.1939 -8.4848 6.6577 23 6 2.9744 -7.8802 6.8973 24 6 2.1246 -7.5921 5.8426 25 9 0.9321 -7.0023 6.0772 26 6 2.1609 -3.7402 0.0462 27 1 -0.4850 0.8401 0.0004 28 1 -0.3474 -1.7969 -1.0267 29 1 1.3275 -2.4975 2.2141 30 1 -0.3215 -2.8326 1.5249 31 1 2.9085 -6.1492 2.5266 32 1 1.7236 -5.4650 3.6651 33 1 0.5392 -7.6418 3.7417 34 1 1.7238 -8.3266 2.6032 35 1 5.5199 -9.2749 5.1793 36 1 4.8560 -8.7091 7.4810 37 1 2.6842 -7.6321 7.9076 38 1 2.2027 -4.2899 -0.8940 39 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771816865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:20 Heat of formation + Delta-G solvation = -150.020262 kcal Electronic energy + Delta-G solvation = -28305.116608 eV Core-core repulsion = 23784.328862 eV Total energy + Delta-G solvation = -4520.787746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.32331 -49.31327 -39.31545 -38.44268 -36.65109 -35.53176 -34.80094 -33.87273 -32.16293 -30.69956 -30.04918 -27.80186 -25.28285 -25.10186 -24.43045 -23.26586 -21.84209 -19.59492 -18.51849 -18.25319 -17.75140 -17.51901 -16.98509 -16.48193 -16.20143 -15.95338 -15.82923 -15.78549 -15.58651 -15.11976 -14.74423 -14.31764 -14.25547 -14.04717 -13.63430 -13.23625 -13.13644 -13.06082 -12.94379 -12.39975 -12.27944 -12.12709 -11.89096 -11.69984 -11.63857 -11.60351 -11.52282 -11.44668 -11.08198 -10.81996 -10.56007 -10.51979 -10.23656 -9.32842 -9.25191 -9.16549 -8.73564 -8.54871 -8.02784 -6.33877 -4.44896 0.46013 0.54837 0.65276 2.90147 3.06992 3.18056 3.24548 3.26483 3.49464 3.99625 4.03236 4.19463 4.20148 4.21406 4.37330 4.40045 4.59749 4.71519 4.80153 4.91931 5.10791 5.25005 5.39521 5.41457 5.50041 5.52087 5.66381 5.68472 5.71548 6.00574 6.08180 6.30299 6.33917 6.40912 6.68208 6.81382 7.02154 7.52184 7.68325 7.88116 8.57633 9.25635 9.51624 10.72382 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015351 B = 0.002886 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.508579 B = 9699.896010 C =10171.146111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.246 3.754 10 O -0.571 6.571 11 C 0.103 3.897 12 N -1.025 6.025 13 S 2.621 3.379 14 O -0.954 6.954 15 O -0.957 6.957 16 C -0.641 4.641 17 C -0.071 4.071 18 C -0.145 4.145 19 C 0.133 3.867 20 F -0.125 7.125 21 C -0.162 4.162 22 C -0.065 4.065 23 C -0.162 4.162 24 C 0.133 3.867 25 F -0.125 7.125 26 C 0.128 3.872 27 H 0.274 0.726 28 H 0.392 0.608 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.075 0.925 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.317 -14.540 14.082 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.089 0.911 9 C 0.202 3.798 10 O -0.383 6.383 11 C -0.022 4.022 12 N -0.865 5.865 13 S 2.715 3.285 14 O -0.945 6.945 15 O -0.948 6.948 16 C -0.767 4.767 17 C -0.109 4.109 18 C -0.148 4.148 19 C 0.113 3.887 20 F -0.103 7.103 21 C -0.181 4.181 22 C -0.083 4.083 23 C -0.181 4.181 24 C 0.114 3.886 25 F -0.103 7.103 26 C 0.003 3.997 27 H 0.084 0.916 28 H 0.246 0.754 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.094 0.906 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.662 -15.743 13.608 22.175 hybrid contribution 0.655 1.582 0.721 1.857 sum 8.316 -14.161 14.329 21.795 Atomic orbital electron populations 1.69409 1.06134 1.28244 1.49759 1.25088 0.95022 0.99797 0.93217 0.86407 0.79479 0.81812 0.78861 1.21057 1.20007 1.19907 1.21527 0.93845 0.90055 1.52336 0.91121 1.19833 0.85625 0.90636 0.83685 1.86056 1.47062 1.49879 1.55310 1.23916 1.00154 0.75884 1.02270 1.60233 1.53624 1.19768 1.52906 1.04742 0.75432 0.73043 0.75324 1.93563 1.32193 1.85396 1.83333 1.93553 1.85877 1.68218 1.47118 1.30953 1.19305 1.04243 1.22212 1.20148 0.99579 0.94843 0.96378 1.19722 0.96541 1.03870 0.94654 1.17239 0.93054 0.98490 0.79892 1.91558 1.91340 1.90337 1.37103 1.21237 1.00898 1.04062 0.91939 1.20870 0.95333 0.95681 0.96424 1.21244 0.94977 1.02748 0.99149 1.17247 0.82568 0.96336 0.92485 1.91563 1.42780 1.80962 1.94984 1.23072 0.92297 0.93865 0.90430 0.91618 0.75380 0.90477 0.90843 0.85163 0.85110 0.88563 0.88579 0.83794 0.83773 0.83780 0.90647 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.95 11.20 55.43 0.62 -22.33 16 2 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 3 Si 0.91 19.38 29.54 -169.99 -5.02 14.36 16 4 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.54 -13.38 8.61 -34.44 -0.30 -13.68 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.25 5.92 1.40 -90.84 -0.13 5.79 16 10 O -0.57 -14.99 13.49 -35.23 -0.48 -15.46 16 11 C 0.10 2.26 8.32 -2.84 -0.02 2.24 16 12 N -1.02 -20.62 4.00 -118.50 -0.47 -21.09 16 13 S 2.62 47.78 5.93 -107.50 -0.64 47.14 16 14 O -0.95 -20.12 18.02 -57.54 -1.04 -21.16 16 15 O -0.96 -19.74 18.02 -57.54 -1.04 -20.78 16 16 C -0.64 -8.69 6.16 37.16 0.23 -8.46 16 17 C -0.07 -0.89 5.00 -27.89 -0.14 -1.03 16 18 C -0.15 -1.64 5.15 -104.49 -0.54 -2.18 16 19 C 0.13 1.38 7.24 -39.43 -0.29 1.09 16 20 F -0.13 -1.45 16.47 2.25 0.04 -1.42 16 21 C -0.16 -1.22 10.03 -39.50 -0.40 -1.62 16 22 C -0.06 -0.40 10.04 -39.60 -0.40 -0.80 16 23 C -0.16 -1.24 10.02 -39.50 -0.40 -1.63 16 24 C 0.13 1.40 7.24 -39.43 -0.29 1.11 16 25 F -0.12 -1.49 16.48 2.25 0.04 -1.45 16 26 C 0.13 2.63 8.31 -2.96 -0.02 2.61 16 27 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.39 10.36 6.60 45.56 0.30 10.66 16 29 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 30 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.13 1.59 8.14 -51.92 -0.42 1.16 16 32 H 0.13 1.64 8.14 -51.92 -0.42 1.22 16 33 H 0.10 1.16 7.64 -51.93 -0.40 0.76 16 34 H 0.10 1.14 7.63 -51.93 -0.40 0.74 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 37 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -31.55 358.29 -9.20 -40.75 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -3.84 Total: 10.89 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -2.78 Total: -14.87 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.15 Total: -43.42 kcal Atomic # 8 Polarization: -54.85 SS G_CDS: -2.55 Total: -57.40 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.07 Total: -2.86 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: 47.78 SS G_CDS: -0.64 Total: 47.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.55 -9.20 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771816865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.269 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds