Wall clock time and date at job start Wed Apr 1 2020 04:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46505 * 119.99550 * 2 1 4 4 C 1.50695 * 109.47075 * 275.57323 * 3 2 1 5 5 H 1.07994 * 120.00341 * 4.71913 * 4 3 2 6 6 C 1.37880 * 119.99612 * 184.72276 * 4 3 2 7 7 N 1.31514 * 120.00255 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99826 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47047 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47278 * 119.99724 * 8 6 4 11 11 H 1.48507 * 109.46909 * 239.99484 * 8 6 4 12 12 S 1.65593 * 120.00101 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40291 * 159.57112 * 12 2 1 14 14 O 1.42100 * 106.40631 * 26.64946 * 12 2 1 15 15 N 1.65603 * 107.21818 * 273.10783 * 12 2 1 16 16 C 1.46505 * 119.99599 * 62.77551 * 15 12 2 17 17 C 1.53006 * 109.46665 * 164.44327 * 16 15 12 18 18 N 1.46495 * 109.46711 * 179.97438 * 17 16 15 19 19 C 1.34779 * 119.99967 * 180.02562 * 18 17 16 20 20 O 1.21697 * 119.99804 * 359.97438 * 19 18 17 21 21 C 1.46586 * 119.99972 * 180.02562 * 19 18 17 22 22 C 1.36649 * 125.45296 * 179.97438 * 21 19 18 23 23 C 1.37471 * 113.29038 * 179.97438 * 22 21 19 24 24 C 1.33819 * 115.10762 * 0.02562 * 23 22 21 25 25 S 1.70621 * 110.95006 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.46794 * 269.99586 * 1 2 3 27 27 H 1.08994 * 109.47162 * 29.99773 * 1 2 3 28 28 H 1.09000 * 109.46939 * 149.99807 * 1 2 3 29 29 H 1.08997 * 109.46933 * 35.57381 * 3 2 1 30 30 H 1.09002 * 109.46369 * 155.57059 * 3 2 1 31 31 H 0.97003 * 119.99972 * 180.02562 * 7 6 4 32 32 H 0.96999 * 120.00293 * 242.77530 * 15 12 2 33 33 H 1.09004 * 109.46873 * 44.44630 * 16 15 12 34 34 H 1.09000 * 109.47058 * 284.44463 * 16 15 12 35 35 H 1.08993 * 109.46842 * 60.00336 * 17 16 15 36 36 H 1.08995 * 109.47046 * 299.99783 * 17 16 15 37 37 H 0.97001 * 120.00655 * 0.02562 * 18 17 16 38 38 H 1.08000 * 123.35554 * 0.27323 * 22 21 19 39 39 H 1.08011 * 122.44576 * 180.02562 * 23 22 21 40 40 H 1.07999 * 124.52435 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3291 1.7728 -1.4141 5 1 1.8445 1.2458 -2.2225 6 6 3.0684 2.9069 -1.6756 7 7 3.6582 3.5491 -0.6911 8 14 3.2310 3.5322 -3.4284 9 1 2.4782 2.6383 -4.3446 10 1 2.6806 4.9086 -3.5160 11 1 4.6640 3.5463 -3.8179 12 16 2.2931 -1.4341 -0.0006 13 8 3.6000 -1.1426 -0.4763 14 8 1.4387 -2.3906 -0.6125 15 7 2.4639 -1.9022 1.5786 16 6 1.2785 -2.1971 2.3875 17 6 1.6966 -2.9620 3.6449 18 7 0.5114 -3.2563 4.4541 19 6 0.6383 -3.9273 5.6161 20 8 1.7375 -4.2890 5.9929 21 6 -0.5477 -4.2223 6.4254 22 6 -0.5480 -4.8928 7.6161 23 6 -1.8021 -5.0298 8.1624 24 6 -2.7956 -4.4916 7.4455 25 16 -2.1978 -3.7711 6.0191 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6552 2.0013 0.5978 30 1 3.1895 1.1156 0.4250 31 1 4.1779 4.3472 -0.8751 32 1 3.3487 -1.9811 1.9681 33 1 0.5843 -2.8045 1.8067 34 1 0.7930 -1.2642 2.6742 35 1 2.3908 -2.3546 4.2256 36 1 2.1821 -3.8948 3.3582 37 1 -0.3648 -2.9684 4.1536 38 1 0.3482 -5.2727 8.0839 39 1 -1.9729 -5.5350 9.1017 40 1 -3.8368 -4.5107 7.7317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048671138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:44 Heat of formation + Delta-G solvation = -74.719867 kcal Electronic energy + Delta-G solvation = -25308.227133 eV Core-core repulsion = 21376.837795 eV Total energy + Delta-G solvation = -3931.389338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09265 -37.96927 -36.75779 -36.30465 -35.53321 -35.21047 -34.08094 -32.45930 -30.60740 -28.38437 -27.81099 -25.31806 -25.10303 -23.08987 -22.32121 -21.70980 -19.78018 -19.05288 -18.99565 -17.41174 -16.79161 -16.54442 -16.42156 -16.23685 -15.98898 -15.62654 -15.23337 -14.92571 -14.66443 -14.27018 -13.95644 -13.51307 -13.32902 -13.28660 -13.20047 -12.73015 -12.49034 -12.34329 -12.20031 -12.14127 -11.65691 -11.55368 -11.45409 -11.35138 -11.17890 -11.10097 -10.72660 -10.54482 -10.45532 -10.06707 -9.78320 -9.60935 -9.45597 -9.26498 -9.05205 -8.46847 -8.11842 -6.08613 -4.12867 0.06696 1.01150 1.13623 1.41497 1.97058 2.67599 2.85413 3.29737 3.37714 3.42150 3.51768 4.06582 4.34869 4.43073 4.48952 4.58272 4.81269 4.85175 4.99384 5.02914 5.15127 5.26685 5.42799 5.51041 5.56993 5.64487 5.71779 5.78184 5.86628 5.91105 6.02724 6.23464 6.50956 6.98948 7.02314 7.22053 7.36778 7.57962 7.76814 7.88799 8.17717 8.89996 9.52769 11.00038 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.002110 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.871779 B =13269.555857 C =13589.874323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.995 5.995 3 C 0.256 3.744 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.784 3.216 13 O -0.959 6.959 14 O -0.996 6.996 15 N -1.132 6.132 16 C 0.110 3.890 17 C 0.114 3.886 18 N -0.724 5.724 19 C 0.593 3.407 20 O -0.526 6.526 21 C -0.269 4.269 22 C -0.054 4.054 23 C -0.151 4.151 24 C -0.228 4.228 25 S 0.205 5.795 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.415 0.585 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.400 0.600 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.190 -14.792 17.311 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.838 5.838 3 C 0.134 3.866 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.791 3.209 13 O -0.943 6.943 14 O -0.980 6.980 15 N -0.891 5.891 16 C -0.018 4.018 17 C -0.011 4.011 18 N -0.377 5.377 19 C 0.379 3.621 20 O -0.404 6.404 21 C -0.389 4.389 22 C -0.088 4.088 23 C -0.182 4.182 24 C -0.366 4.366 25 S 0.472 5.528 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.248 0.752 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.235 0.765 38 H 0.172 0.828 39 H 0.164 0.836 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.836 -14.559 15.538 25.393 hybrid contribution 0.450 0.047 0.809 0.927 sum -13.385 -14.512 16.347 25.632 Atomic orbital electron populations 1.21391 0.80287 1.03656 1.00060 1.57605 1.14247 1.23325 1.88597 1.19094 0.91260 0.78563 0.97719 1.21523 1.31784 1.10306 0.93418 0.92070 1.24947 0.95015 0.96560 0.97529 1.69925 1.33203 1.18907 1.31275 0.86452 0.78079 0.78453 0.84511 1.19641 1.20965 1.20777 1.01942 0.73445 0.72909 0.72621 1.93657 1.38607 1.84508 1.77529 1.93527 1.69026 1.61195 1.74218 1.56207 1.13577 1.85931 1.33365 1.21277 0.88407 0.99898 0.92215 1.21568 0.87568 1.00982 0.90979 1.45697 1.11114 1.58580 1.22277 1.16898 0.87319 0.77733 0.80195 1.90856 1.26239 1.52426 1.70837 1.24632 0.97365 1.13786 1.03127 1.20836 0.99094 0.95932 0.92900 1.20081 0.91409 1.04087 1.02620 1.25367 1.04805 1.05811 1.00633 1.83082 0.97117 1.52461 1.20145 0.94386 0.90289 0.91560 0.94955 0.93882 0.92700 0.75161 0.89931 0.91023 0.90079 0.90102 0.76528 0.82797 0.83592 0.81251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.69 59.85 0.64 2.09 16 2 N -0.99 -19.50 3.23 -123.05 -0.40 -19.90 16 3 C 0.26 6.22 5.10 -5.19 -0.03 6.19 16 4 C -0.53 -14.66 9.38 -34.44 -0.32 -14.98 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 S 2.78 52.25 6.09 -107.50 -0.65 51.59 16 13 O -0.96 -22.30 16.99 -57.17 -0.97 -23.27 16 14 O -1.00 -19.70 16.34 -57.17 -0.93 -20.64 16 15 N -1.13 -15.24 6.05 -10.61 -0.06 -15.31 16 16 C 0.11 1.15 6.37 -4.04 -0.03 1.13 16 17 C 0.11 1.12 5.82 -4.04 -0.02 1.10 16 18 N -0.72 -6.58 5.55 -61.65 -0.34 -6.93 16 19 C 0.59 6.59 7.78 -12.89 -0.10 6.49 16 20 O -0.53 -7.69 16.84 5.19 0.09 -7.60 16 21 C -0.27 -2.39 6.45 -36.79 -0.24 -2.63 16 22 C -0.05 -0.44 10.01 -40.44 -0.40 -0.84 16 23 C -0.15 -0.92 10.15 -41.41 -0.42 -1.34 16 24 C -0.23 -1.23 10.92 29.18 0.32 -0.91 16 25 S 0.21 1.23 22.16 -107.50 -2.38 -1.15 16 26 H 0.04 0.46 8.05 -51.93 -0.42 0.04 16 27 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.07 0.97 7.05 -51.93 -0.37 0.61 16 29 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 30 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.42 4.94 8.66 -34.48 -0.30 4.64 16 33 H 0.08 0.82 7.79 -51.93 -0.40 0.42 16 34 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.40 2.67 7.59 -40.82 -0.31 2.36 16 38 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 40 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -36.53 372.98 -10.13 -46.66 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.10 Total: 1.50 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -0.70 Total: -2.06 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: -0.07 Total: -67.30 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -1.82 Total: -51.51 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 53.47 SS G_CDS: -3.04 Total: 50.44 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.53 -10.13 -46.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048671138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.064 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds