Wall clock time and date at job start Wed Apr 1 2020 04:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46505 * 119.99550 * 2 1 4 4 C 1.50695 * 109.47075 * 275.57323 * 3 2 1 5 5 H 1.07994 * 120.00341 * 4.71913 * 4 3 2 6 6 C 1.37880 * 119.99612 * 184.72276 * 4 3 2 7 7 N 1.31514 * 120.00255 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99826 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47047 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47278 * 119.99724 * 8 6 4 11 11 H 1.48507 * 109.46909 * 239.99484 * 8 6 4 12 12 S 1.65593 * 120.00101 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40291 * 159.57112 * 12 2 1 14 14 O 1.42100 * 106.40631 * 26.64946 * 12 2 1 15 15 N 1.65603 * 107.21818 * 273.10783 * 12 2 1 16 16 C 1.46505 * 119.99599 * 62.77551 * 15 12 2 17 17 C 1.53006 * 109.46665 * 164.44327 * 16 15 12 18 18 N 1.46495 * 109.46711 * 179.97438 * 17 16 15 19 19 C 1.34779 * 119.99967 * 180.02562 * 18 17 16 20 20 O 1.21697 * 119.99804 * 359.97438 * 19 18 17 21 21 C 1.46586 * 119.99972 * 180.02562 * 19 18 17 22 22 C 1.36649 * 125.45296 * 179.97438 * 21 19 18 23 23 C 1.37471 * 113.29038 * 179.97438 * 22 21 19 24 24 C 1.33819 * 115.10762 * 0.02562 * 23 22 21 25 25 S 1.70621 * 110.95006 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.46794 * 269.99586 * 1 2 3 27 27 H 1.08994 * 109.47162 * 29.99773 * 1 2 3 28 28 H 1.09000 * 109.46939 * 149.99807 * 1 2 3 29 29 H 1.08997 * 109.46933 * 35.57381 * 3 2 1 30 30 H 1.09002 * 109.46369 * 155.57059 * 3 2 1 31 31 H 0.97003 * 119.99972 * 180.02562 * 7 6 4 32 32 H 0.96999 * 120.00293 * 242.77530 * 15 12 2 33 33 H 1.09004 * 109.46873 * 44.44630 * 16 15 12 34 34 H 1.09000 * 109.47058 * 284.44463 * 16 15 12 35 35 H 1.08993 * 109.46842 * 60.00336 * 17 16 15 36 36 H 1.08995 * 109.47046 * 299.99783 * 17 16 15 37 37 H 0.97001 * 120.00655 * 0.02562 * 18 17 16 38 38 H 1.08000 * 123.35554 * 0.27323 * 22 21 19 39 39 H 1.08011 * 122.44576 * 180.02562 * 23 22 21 40 40 H 1.07999 * 124.52435 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3291 1.7728 -1.4141 5 1 1.8445 1.2458 -2.2225 6 6 3.0684 2.9069 -1.6756 7 7 3.6582 3.5491 -0.6911 8 14 3.2310 3.5322 -3.4284 9 1 2.4782 2.6383 -4.3446 10 1 2.6806 4.9086 -3.5160 11 1 4.6640 3.5463 -3.8179 12 16 2.2931 -1.4341 -0.0006 13 8 3.6000 -1.1426 -0.4763 14 8 1.4387 -2.3906 -0.6125 15 7 2.4639 -1.9022 1.5786 16 6 1.2785 -2.1971 2.3875 17 6 1.6966 -2.9620 3.6449 18 7 0.5114 -3.2563 4.4541 19 6 0.6383 -3.9273 5.6161 20 8 1.7375 -4.2890 5.9929 21 6 -0.5477 -4.2223 6.4254 22 6 -0.5480 -4.8928 7.6161 23 6 -1.8021 -5.0298 8.1624 24 6 -2.7956 -4.4916 7.4455 25 16 -2.1978 -3.7711 6.0191 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6552 2.0013 0.5978 30 1 3.1895 1.1156 0.4250 31 1 4.1779 4.3472 -0.8751 32 1 3.3487 -1.9811 1.9681 33 1 0.5843 -2.8045 1.8067 34 1 0.7930 -1.2642 2.6742 35 1 2.3908 -2.3546 4.2256 36 1 2.1821 -3.8948 3.3582 37 1 -0.3648 -2.9684 4.1536 38 1 0.3482 -5.2727 8.0839 39 1 -1.9729 -5.5350 9.1017 40 1 -3.8368 -4.5107 7.7317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048671138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:44 Heat of formation + Delta-G solvation = -104.289595 kcal Electronic energy + Delta-G solvation = -25309.509373 eV Core-core repulsion = 21376.837795 eV Total energy + Delta-G solvation = -3932.671577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90376 -38.53630 -38.28703 -37.36267 -37.15015 -36.84322 -35.06115 -34.48623 -31.26825 -29.63967 -29.20660 -26.75879 -25.90390 -24.20676 -23.88526 -22.46041 -20.46226 -20.32837 -19.66650 -18.97950 -18.43967 -18.19233 -17.44932 -17.06534 -16.86793 -16.82804 -16.48339 -15.90127 -15.85627 -15.54794 -15.03506 -14.90895 -14.67216 -14.07107 -13.97601 -13.84333 -13.68150 -13.46323 -13.30625 -13.24150 -13.20552 -13.07273 -12.99975 -12.92666 -12.64934 -12.44745 -12.35282 -11.96404 -11.93844 -11.70963 -11.33728 -10.64873 -10.56580 -10.35664 -9.83358 -9.76598 -9.50565 -8.19792 -6.31307 -0.49805 -0.34472 0.50198 0.93790 1.38898 1.40858 1.41950 1.52929 1.79039 2.12423 2.22035 2.41430 2.67680 3.11773 3.43916 3.59455 3.81478 3.99536 4.12742 4.16498 4.32090 4.37009 4.47954 4.56203 4.74306 4.82365 4.84903 4.90825 5.03952 5.13084 5.19926 5.23525 5.24020 5.36961 5.46503 5.72326 5.86736 6.07900 6.13582 6.30354 6.78050 6.99393 7.37807 8.87854 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.002110 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.871779 B =13269.555857 C =13589.874323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.001 6.001 3 C 0.270 3.730 4 C -0.549 4.549 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.924 5.924 8 Si 0.956 3.044 9 H -0.268 1.268 10 H -0.270 1.270 11 H -0.282 1.282 12 S 2.803 3.197 13 O -1.010 7.010 14 O -1.006 7.006 15 N -1.119 6.119 16 C 0.105 3.895 17 C 0.119 3.881 18 N -0.713 5.713 19 C 0.590 3.410 20 O -0.573 6.573 21 C -0.306 4.306 22 C -0.060 4.060 23 C -0.162 4.162 24 C -0.219 4.219 25 S 0.242 5.758 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.019 0.981 31 H 0.267 0.733 32 H 0.424 0.576 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.146 0.854 39 H 0.167 0.833 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.800 -15.084 17.819 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.843 5.843 3 C 0.146 3.854 4 C -0.588 4.588 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.195 1.195 11 H -0.208 1.208 12 S 2.811 3.189 13 O -0.994 6.994 14 O -0.989 6.989 15 N -0.883 5.883 16 C -0.021 4.021 17 C -0.006 4.006 18 N -0.366 5.366 19 C 0.377 3.623 20 O -0.454 6.454 21 C -0.426 4.426 22 C -0.094 4.094 23 C -0.192 4.192 24 C -0.356 4.356 25 S 0.510 5.490 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.259 0.741 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.250 0.750 38 H 0.164 0.836 39 H 0.185 0.815 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -16.505 -14.846 16.025 27.380 hybrid contribution 1.139 0.059 0.742 1.360 sum -15.366 -14.788 16.767 27.128 Atomic orbital electron populations 1.21679 0.77857 1.03762 1.02888 1.57454 1.15881 1.21739 1.89248 1.18640 0.90652 0.80279 0.95830 1.21892 1.31625 1.10456 0.94828 0.92777 1.25759 0.94871 0.96957 1.01360 1.70012 1.33885 1.19417 1.33075 0.85541 0.77926 0.78448 0.79989 1.19268 1.19523 1.20780 1.01086 0.72035 0.72492 0.73323 1.93586 1.41230 1.85175 1.79410 1.93510 1.69013 1.61147 1.75256 1.55703 1.15223 1.85254 1.32081 1.21524 0.87292 1.01252 0.92042 1.21427 0.87890 1.00599 0.90734 1.45566 1.11523 1.57904 1.21619 1.17256 0.87481 0.77094 0.80432 1.90821 1.28129 1.54459 1.72004 1.24557 0.98389 1.15933 1.03743 1.21016 0.99948 0.95621 0.92861 1.20250 0.90565 1.04723 1.03658 1.25811 1.06073 1.03976 0.99780 1.82892 0.94466 1.51596 1.20069 0.90187 0.91206 0.90464 0.95186 0.96277 0.92437 0.74088 0.88755 0.89020 0.90414 0.90663 0.74967 0.83637 0.81541 0.78363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.43 10.69 127.77 1.37 3.80 16 2 N -1.00 -38.48 3.23 -543.22 -1.75 -40.23 16 3 C 0.27 13.23 5.10 85.63 0.44 13.67 16 4 C -0.55 -30.53 9.38 25.60 0.24 -30.29 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.56 5.46 84.66 0.46 1.02 16 7 N -0.92 -53.98 13.29 21.45 0.28 -53.69 16 8 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 S 2.80 103.88 6.09 -56.49 -0.34 103.54 16 13 O -1.01 -47.85 16.99 -128.00 -2.17 -50.03 16 14 O -1.01 -38.56 16.34 -128.00 -2.09 -40.65 16 15 N -1.12 -28.99 6.05 -187.47 -1.13 -30.12 16 16 C 0.11 1.99 6.37 86.38 0.55 2.54 16 17 C 0.12 2.23 5.82 86.38 0.50 2.73 16 18 N -0.71 -12.15 5.55 -467.18 -2.59 -14.74 16 19 C 0.59 13.06 7.78 86.42 0.67 13.73 16 20 O -0.57 -17.33 16.84 -4.34 -0.07 -17.40 16 21 C -0.31 -5.23 6.45 24.08 0.16 -5.07 16 22 C -0.06 -0.94 10.01 21.72 0.22 -0.72 16 23 C -0.16 -1.63 10.15 21.08 0.21 -1.42 16 24 C -0.22 -1.67 10.92 66.81 0.73 -0.94 16 25 S 0.24 2.31 22.16 -56.49 -1.25 1.06 16 26 H 0.08 1.66 8.05 -2.39 -0.02 1.64 16 27 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 28 H 0.08 2.09 7.05 -2.39 -0.02 2.07 16 29 H 0.03 1.47 8.11 -2.39 -0.02 1.45 16 30 H 0.02 1.03 7.50 -2.39 -0.02 1.01 16 31 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.42 9.87 8.66 -96.74 -0.84 9.03 16 33 H 0.09 1.62 7.79 -2.38 -0.02 1.60 16 34 H 0.09 1.42 8.05 -2.39 -0.02 1.40 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.41 4.65 7.59 -92.71 -0.70 3.95 16 38 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.17 0.90 8.06 -2.90 -0.02 0.88 16 40 H 0.20 0.33 8.06 -2.91 -0.02 0.30 16 Total: -1.00 -80.02 372.98 -4.01 -84.03 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -0.45 Total: 12.78 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 5.55 Total: -0.95 kcal Atomic # 7 Polarization: -133.59 SS G_CDS: -5.20 Total: -138.79 kcal Atomic # 8 Polarization: -103.74 SS G_CDS: -4.34 Total: -108.08 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 106.20 SS G_CDS: -1.60 Total: 104.60 kcal Total: -80.02 -4.01 -84.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048671138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.264 kcal (2) G-P(sol) polarization free energy of solvation -80.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds