Wall clock time and date at job start Wed Apr 1 2020 04:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99895 * 2 1 4 4 C 1.50699 * 109.46950 * 269.99695 * 3 2 1 5 5 H 1.08003 * 120.00117 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99742 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00056 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99797 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47162 * 59.99812 * 8 6 4 10 10 H 1.48497 * 109.47238 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47059 * 299.99995 * 8 6 4 12 12 C 1.34776 * 119.99897 * 180.02562 * 2 1 3 13 13 O 1.21287 * 119.99873 * 180.02562 * 12 2 1 14 14 C 1.50701 * 120.00049 * 359.97438 * 12 2 1 15 15 C 1.50700 * 109.47150 * 180.02562 * 14 12 2 16 16 C 1.38243 * 119.99863 * 90.00172 * 15 14 12 17 17 C 1.38230 * 120.00026 * 180.02562 * 16 15 14 18 18 C 1.38238 * 120.00107 * 0.02562 * 17 16 15 19 19 S 1.76193 * 120.00111 * 179.97438 * 18 17 16 20 20 O 1.42105 * 104.27847 * 206.07237 * 19 18 17 21 21 O 1.42101 * 104.27778 * 333.92907 * 19 18 17 22 22 C 1.81397 * 104.44909 * 90.00071 * 19 18 17 23 23 F 1.39895 * 109.47260 * 299.99710 * 22 19 18 24 24 F 1.39903 * 109.47318 * 60.00195 * 22 19 18 25 25 C 1.38238 * 119.99950 * 0.25627 * 18 17 16 26 26 C 1.38237 * 119.99927 * 359.48628 * 25 18 17 27 27 H 1.08999 * 109.47416 * 269.99962 * 1 2 3 28 28 H 1.08999 * 109.47165 * 30.00414 * 1 2 3 29 29 H 1.09002 * 109.47215 * 149.99965 * 1 2 3 30 30 H 1.08992 * 109.47172 * 30.00061 * 3 2 1 31 31 H 1.09001 * 109.46785 * 149.99853 * 3 2 1 32 32 H 0.97001 * 119.99991 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.46837 * 60.00475 * 14 12 2 34 34 H 1.09000 * 109.47167 * 300.00388 * 14 12 2 35 35 H 1.08002 * 119.99941 * 0.02562 * 16 15 14 36 36 H 1.07998 * 119.99877 * 179.97438 * 17 16 15 37 37 H 1.09003 * 109.47352 * 180.02562 * 22 19 18 38 38 H 1.07994 * 120.00275 * 179.72878 * 25 18 17 39 39 H 1.07996 * 120.00075 * 180.22999 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5550 3.6170 -0.6732 8 14 3.4389 3.4162 -3.4339 9 1 2.1416 3.5941 -4.1344 10 1 4.1813 4.7023 -3.4340 11 1 4.2414 2.3809 -4.1335 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3646 -3.6178 -0.0005 16 6 2.8137 -4.1431 1.1967 17 6 3.7124 -5.1935 1.1968 18 6 4.1624 -5.7182 -0.0004 19 16 5.3084 -7.0565 -0.0003 20 8 5.9966 -6.9287 -1.2371 21 8 5.9956 -6.9294 1.2369 22 6 4.2685 -8.5428 -0.0012 23 9 3.4604 -8.5472 1.1408 24 9 3.4612 -8.5466 -1.1438 25 6 3.7178 -5.1890 -1.1976 26 6 2.8150 -4.1421 -1.1977 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1384 0.5139 32 1 4.0325 4.4426 -0.8504 33 1 0.7584 -2.5298 -0.8903 34 1 0.7590 -2.5302 0.8897 35 1 2.4625 -3.7330 2.1320 36 1 4.0635 -5.6036 2.1321 37 1 4.9022 -9.4297 -0.0007 38 1 4.0727 -5.5960 -2.1328 39 1 2.4648 -3.7311 -2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076961964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:21 Heat of formation + Delta-G solvation = -155.366633 kcal Electronic energy + Delta-G solvation = -27837.364358 eV Core-core repulsion = 23316.344776 eV Total energy + Delta-G solvation = -4521.019582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -49.73673 -47.89448 -39.89842 -38.54826 -37.78426 -36.65952 -34.90535 -33.22204 -32.53070 -31.18053 -28.82236 -28.07508 -27.26069 -25.71213 -23.30227 -23.03851 -21.87536 -20.06899 -18.89161 -18.64757 -18.56239 -18.16443 -17.53065 -16.62589 -16.40673 -16.29143 -15.81661 -15.36831 -15.01915 -14.94189 -14.69699 -14.55586 -14.47971 -14.15373 -14.07614 -13.67297 -13.32122 -13.19035 -12.82605 -12.72892 -12.63227 -12.57333 -12.34323 -12.17187 -11.90540 -11.80580 -11.34055 -11.25279 -11.20545 -10.93170 -10.87983 -10.58675 -10.19356 -9.69471 -9.46126 -9.11165 -8.90878 -8.46441 -7.72446 -6.07536 -4.12803 -1.00045 0.63393 1.24682 1.97874 2.86526 3.08828 3.24853 3.28460 3.30453 3.34835 3.38748 3.42961 3.56348 3.96759 3.98383 4.42073 4.57823 4.59750 4.75275 5.09827 5.12706 5.19686 5.27678 5.40391 5.43152 5.55638 5.68107 5.82797 5.86488 5.90519 6.02523 6.14201 6.39421 6.71053 6.98558 7.38774 7.46424 7.88001 8.18780 8.31858 8.84317 9.00109 9.52425 11.00601 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.002488 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.134369 B =11251.838006 C =11841.947059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.602 5.602 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.506 3.494 13 O -0.532 6.532 14 C -0.117 4.117 15 C 0.013 3.987 16 C -0.127 4.127 17 C -0.012 4.012 18 C -0.663 4.663 19 S 2.477 3.523 20 O -0.890 6.890 21 O -0.890 6.890 22 C -0.212 4.212 23 F -0.165 7.165 24 F -0.164 7.164 25 C -0.011 4.011 26 C -0.125 4.125 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.152 0.848 38 H 0.143 0.857 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 -24.696 3.058 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.334 5.334 3 C 0.127 3.873 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.291 3.709 13 O -0.409 6.409 14 C -0.157 4.157 15 C 0.013 3.987 16 C -0.146 4.146 17 C -0.031 4.031 18 C -0.754 4.754 19 S 2.648 3.352 20 O -0.887 6.887 21 O -0.888 6.888 22 C -0.347 4.347 23 F -0.146 7.146 24 F -0.146 7.146 25 C -0.030 4.030 26 C -0.144 4.144 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.169 0.831 38 H 0.161 0.839 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.347 -24.552 3.110 24.974 hybrid contribution -0.946 0.374 -1.004 1.430 sum -4.293 -24.178 2.106 24.647 Atomic orbital electron populations 1.21672 0.81362 1.02706 1.00525 1.48167 1.06220 1.07729 1.71283 1.19304 0.92559 0.77902 0.97569 1.21375 1.36812 1.06377 0.92207 0.92533 1.24938 0.95273 0.96366 0.97488 1.69916 1.38151 1.14404 1.30847 0.86551 0.78368 0.77884 0.84580 1.20241 1.21129 1.20130 1.20003 0.88070 0.84560 0.78219 1.90726 1.13633 1.87015 1.49542 1.20963 0.97704 0.91793 1.05250 1.19841 0.93139 0.92214 0.93551 1.21115 0.98415 0.96916 0.98144 1.20835 0.92130 0.94010 0.96146 1.29690 1.23762 1.21574 1.00399 1.06883 0.76140 0.76250 0.75887 1.93661 1.67952 1.83186 1.43893 1.93656 1.68005 1.83225 1.43872 1.33136 0.98423 1.26782 0.76324 1.93087 1.75134 1.98209 1.48188 1.93092 1.75162 1.98206 1.48126 1.20853 0.92039 0.93932 0.96187 1.21152 0.98183 0.96782 0.98290 0.93609 0.90625 0.92423 0.94930 0.93807 0.92591 0.87780 0.87928 0.84795 0.83984 0.83065 0.83944 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.24 59.85 0.61 1.79 16 2 N -0.60 -12.17 2.86 -182.96 -0.52 -12.69 16 3 C 0.25 6.32 5.16 -5.19 -0.03 6.29 16 4 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 5 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.51 9.92 7.67 -10.99 -0.08 9.84 16 13 O -0.53 -13.08 15.61 5.55 0.09 -12.99 16 14 C -0.12 -1.54 4.38 -29.03 -0.13 -1.66 16 15 C 0.01 0.18 4.37 -104.62 -0.46 -0.28 16 16 C -0.13 -1.60 9.70 -39.58 -0.38 -1.98 16 17 C -0.01 -0.14 9.47 -39.58 -0.37 -0.52 16 18 C -0.66 -7.73 5.65 -39.58 -0.22 -7.96 16 19 S 2.48 23.11 5.39 -107.50 -0.58 22.53 16 20 O -0.89 -10.30 17.12 -57.54 -0.98 -11.28 16 21 O -0.89 -10.14 17.13 -57.54 -0.99 -11.13 16 22 C -0.21 -1.43 5.94 101.05 0.60 -0.83 16 23 F -0.16 -1.36 17.37 2.25 0.04 -1.32 16 24 F -0.16 -1.38 17.37 2.25 0.04 -1.34 16 25 C -0.01 -0.13 9.47 -39.58 -0.37 -0.51 16 26 C -0.13 -1.65 9.70 -39.58 -0.38 -2.03 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 29 H 0.06 0.64 6.44 -51.93 -0.33 0.31 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.10 1.13 7.35 -51.93 -0.38 0.75 16 34 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16 35 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.14 1.34 7.57 -52.49 -0.40 0.95 16 37 H 0.15 0.37 8.14 -51.92 -0.42 -0.05 16 38 H 0.14 1.42 7.56 -52.49 -0.40 1.03 16 39 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -37.99 362.66 -7.76 -45.75 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -4.39 Total: -2.62 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.64 Total: -11.34 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.21 Total: -38.46 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.88 Total: -35.40 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.08 Total: -2.66 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 23.11 SS G_CDS: -0.58 Total: 22.53 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.99 -7.76 -45.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076961964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.612 kcal (2) G-P(sol) polarization free energy of solvation -37.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds