Wall clock time and date at job start Wed Apr 1 2020 04:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99895 * 2 1 4 4 C 1.50699 * 109.46950 * 269.99695 * 3 2 1 5 5 H 1.08003 * 120.00117 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99742 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00056 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99797 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47162 * 59.99812 * 8 6 4 10 10 H 1.48497 * 109.47238 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47059 * 299.99995 * 8 6 4 12 12 C 1.34776 * 119.99897 * 180.02562 * 2 1 3 13 13 O 1.21287 * 119.99873 * 180.02562 * 12 2 1 14 14 C 1.50701 * 120.00049 * 359.97438 * 12 2 1 15 15 C 1.50700 * 109.47150 * 180.02562 * 14 12 2 16 16 C 1.38243 * 119.99863 * 90.00172 * 15 14 12 17 17 C 1.38230 * 120.00026 * 180.02562 * 16 15 14 18 18 C 1.38238 * 120.00107 * 0.02562 * 17 16 15 19 19 S 1.76193 * 120.00111 * 179.97438 * 18 17 16 20 20 O 1.42105 * 104.27847 * 206.07237 * 19 18 17 21 21 O 1.42101 * 104.27778 * 333.92907 * 19 18 17 22 22 C 1.81397 * 104.44909 * 90.00071 * 19 18 17 23 23 F 1.39895 * 109.47260 * 299.99710 * 22 19 18 24 24 F 1.39903 * 109.47318 * 60.00195 * 22 19 18 25 25 C 1.38238 * 119.99950 * 0.25627 * 18 17 16 26 26 C 1.38237 * 119.99927 * 359.48628 * 25 18 17 27 27 H 1.08999 * 109.47416 * 269.99962 * 1 2 3 28 28 H 1.08999 * 109.47165 * 30.00414 * 1 2 3 29 29 H 1.09002 * 109.47215 * 149.99965 * 1 2 3 30 30 H 1.08992 * 109.47172 * 30.00061 * 3 2 1 31 31 H 1.09001 * 109.46785 * 149.99853 * 3 2 1 32 32 H 0.97001 * 119.99991 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.46837 * 60.00475 * 14 12 2 34 34 H 1.09000 * 109.47167 * 300.00388 * 14 12 2 35 35 H 1.08002 * 119.99941 * 0.02562 * 16 15 14 36 36 H 1.07998 * 119.99877 * 179.97438 * 17 16 15 37 37 H 1.09003 * 109.47352 * 180.02562 * 22 19 18 38 38 H 1.07994 * 120.00275 * 179.72878 * 25 18 17 39 39 H 1.07996 * 120.00075 * 180.22999 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5550 3.6170 -0.6732 8 14 3.4389 3.4162 -3.4339 9 1 2.1416 3.5941 -4.1344 10 1 4.1813 4.7023 -3.4340 11 1 4.2414 2.3809 -4.1335 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3646 -3.6178 -0.0005 16 6 2.8137 -4.1431 1.1967 17 6 3.7124 -5.1935 1.1968 18 6 4.1624 -5.7182 -0.0004 19 16 5.3084 -7.0565 -0.0003 20 8 5.9966 -6.9287 -1.2371 21 8 5.9956 -6.9294 1.2369 22 6 4.2685 -8.5428 -0.0012 23 9 3.4604 -8.5472 1.1408 24 9 3.4612 -8.5466 -1.1438 25 6 3.7178 -5.1890 -1.1976 26 6 2.8150 -4.1421 -1.1977 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1384 0.5139 32 1 4.0325 4.4426 -0.8504 33 1 0.7584 -2.5298 -0.8903 34 1 0.7590 -2.5302 0.8897 35 1 2.4625 -3.7330 2.1320 36 1 4.0635 -5.6036 2.1321 37 1 4.9022 -9.4297 -0.0007 38 1 4.0727 -5.5960 -2.1328 39 1 2.4648 -3.7311 -2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076961964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:20 Heat of formation + Delta-G solvation = -182.930263 kcal Electronic energy + Delta-G solvation = -27838.559607 eV Core-core repulsion = 23316.344776 eV Total energy + Delta-G solvation = -4522.214830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.36760 -48.53055 -41.09550 -39.82562 -38.60805 -37.48635 -36.59539 -34.81651 -34.06842 -32.08674 -30.38783 -28.76892 -28.58396 -27.20767 -25.02449 -23.95405 -23.09831 -20.82519 -20.06004 -19.61023 -19.31018 -18.79899 -18.70483 -18.27670 -17.86668 -17.22953 -17.19321 -16.52437 -16.43617 -15.90680 -15.73654 -15.65629 -15.34249 -15.32853 -14.78662 -14.58397 -14.52280 -14.34439 -13.91894 -13.86411 -13.73271 -13.60474 -13.47773 -13.45869 -13.33158 -13.06634 -13.00110 -12.75720 -12.52900 -12.20180 -12.16164 -12.09415 -11.73092 -11.61178 -10.79461 -10.65496 -10.15543 -10.03682 -9.42276 -8.23696 -6.38742 -1.73880 -0.29930 0.31397 1.20981 1.35600 1.40034 1.47109 1.82343 2.06974 2.31672 2.39074 2.42127 2.70042 2.78897 3.06102 3.06843 3.28581 3.55733 3.70884 3.89207 3.90464 4.19645 4.29120 4.43671 4.52495 4.54972 4.73602 4.75661 4.94228 4.98086 4.99050 5.00404 5.11519 5.22586 5.43944 5.54677 5.80868 5.83075 6.04686 6.68470 6.78165 7.27196 7.47378 8.83179 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.002488 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.134369 B =11251.838006 C =11841.947059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.610 5.610 3 C 0.259 3.741 4 C -0.543 4.543 5 H 0.055 0.945 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.967 3.033 9 H -0.258 1.258 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.497 3.503 13 O -0.595 6.595 14 C -0.099 4.099 15 C -0.011 4.011 16 C -0.139 4.139 17 C -0.024 4.024 18 C -0.676 4.676 19 S 2.497 3.503 20 O -0.917 6.917 21 O -0.915 6.915 22 C -0.192 4.192 23 F -0.169 7.169 24 F -0.170 7.170 25 C -0.025 4.025 26 C -0.142 4.142 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.024 0.976 31 H -0.005 1.005 32 H 0.267 0.733 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.209 0.791 38 H 0.157 0.843 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 -26.979 2.289 27.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.341 5.341 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.073 0.927 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.791 3.209 9 H -0.182 1.182 10 H -0.205 1.205 11 H -0.204 1.204 12 C 0.286 3.714 13 O -0.476 6.476 14 C -0.138 4.138 15 C -0.012 4.012 16 C -0.157 4.157 17 C -0.043 4.043 18 C -0.765 4.765 19 S 2.670 3.330 20 O -0.914 6.914 21 O -0.912 6.912 22 C -0.330 4.330 23 F -0.150 7.150 24 F -0.151 7.151 25 C -0.044 4.044 26 C -0.160 4.160 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.042 0.958 31 H 0.013 0.987 32 H 0.076 0.924 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.167 0.833 36 H 0.178 0.822 37 H 0.225 0.775 38 H 0.175 0.825 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.001 -26.799 2.344 27.362 hybrid contribution -0.451 0.978 -0.705 1.287 sum -5.452 -25.821 1.639 26.441 Atomic orbital electron populations 1.22000 0.77571 1.04275 1.02839 1.48183 1.08555 1.06181 1.71208 1.18733 0.91053 0.80509 0.95942 1.21695 1.36857 1.06537 0.93117 0.92678 1.25875 0.94926 0.96495 1.01967 1.70042 1.38867 1.14874 1.33148 0.85480 0.78915 0.77315 0.79189 1.18224 1.20456 1.20406 1.21135 0.87756 0.86234 0.76294 1.90690 1.16679 1.88076 1.52125 1.20920 0.97282 0.87210 1.08384 1.20010 0.94193 0.92884 0.94064 1.21429 0.98548 0.97115 0.98641 1.21163 0.92058 0.93978 0.97109 1.30132 1.23456 1.22702 1.00231 1.06280 0.75657 0.76343 0.74670 1.93628 1.69040 1.84062 1.44670 1.93625 1.69018 1.84065 1.44521 1.32904 0.98107 1.26276 0.75742 1.93092 1.75324 1.98094 1.48528 1.93095 1.75381 1.98094 1.48541 1.21131 0.92109 0.93984 0.97187 1.21415 0.98649 0.97254 0.98721 0.90870 0.91739 0.88193 0.95837 0.98676 0.92409 0.84831 0.84248 0.83286 0.82180 0.77483 0.82494 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.00 10.24 127.77 1.31 3.31 16 2 N -0.61 -24.68 2.86 -851.14 -2.43 -27.11 16 3 C 0.26 13.89 5.16 85.63 0.44 14.33 16 4 C -0.54 -31.21 9.39 25.60 0.24 -30.97 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.36 5.46 84.66 0.46 0.83 16 7 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 8 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 C 0.50 19.50 7.67 87.66 0.67 20.18 16 13 O -0.59 -30.43 15.61 -3.05 -0.05 -30.48 16 14 C -0.10 -2.38 4.38 29.10 0.13 -2.25 16 15 C -0.01 -0.29 4.37 -19.86 -0.09 -0.37 16 16 C -0.14 -3.40 9.70 22.27 0.22 -3.18 16 17 C -0.02 -0.56 9.47 22.27 0.21 -0.35 16 18 C -0.68 -15.40 5.65 22.27 0.13 -15.28 16 19 S 2.50 43.52 5.39 -56.49 -0.30 43.21 16 20 O -0.92 -20.54 17.12 -127.65 -2.19 -22.72 16 21 O -0.92 -20.03 17.13 -127.65 -2.19 -22.22 16 22 C -0.19 -2.00 5.94 113.37 0.67 -1.32 16 23 F -0.17 -2.30 17.37 44.97 0.78 -1.52 16 24 F -0.17 -2.38 17.37 44.97 0.78 -1.60 16 25 C -0.03 -0.61 9.47 22.27 0.21 -0.40 16 26 C -0.14 -3.67 9.70 22.27 0.22 -3.45 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.87 8.07 -2.39 -0.02 1.86 16 29 H 0.10 1.82 6.44 -2.39 -0.02 1.81 16 30 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 31 H 0.00 -0.31 7.42 -2.39 -0.02 -0.32 16 32 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.13 2.42 7.35 -2.39 -0.02 2.40 16 34 H 0.14 2.31 8.05 -2.39 -0.02 2.29 16 35 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.16 2.91 7.57 -2.91 -0.02 2.89 16 37 H 0.21 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.16 3.10 7.56 -2.91 -0.02 3.08 16 39 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -87.34 362.66 2.63 -84.71 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.09 Total: 6.03 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 4.82 Total: -18.93 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -2.15 Total: -83.48 kcal Atomic # 8 Polarization: -71.00 SS G_CDS: -4.42 Total: -75.42 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 1.56 Total: -3.12 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 43.52 SS G_CDS: -0.30 Total: 43.21 kcal Total: -87.34 2.63 -84.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076961964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.218 kcal (2) G-P(sol) polarization free energy of solvation -87.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds