Wall clock time and date at job start Wed Apr 1 2020 04:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.50700 * 109.46878 * 180.02562 * 15 13 12 17 17 C 1.38229 * 120.00095 * 269.72415 * 16 15 13 18 18 C 1.38235 * 120.00117 * 179.76824 * 17 16 15 19 19 C 1.38234 * 119.99997 * 0.48484 * 18 17 16 20 20 S 1.76197 * 120.00249 * 179.76806 * 19 18 17 21 21 O 1.42102 * 104.27620 * 26.09234 * 20 19 18 22 22 O 1.42104 * 104.27708 * 153.94971 * 20 19 18 23 23 C 1.81400 * 104.44958 * 270.02238 * 20 19 18 24 24 F 1.39899 * 109.47151 * 299.99887 * 23 20 19 25 25 F 1.39897 * 109.47249 * 59.99777 * 23 20 19 26 26 C 1.38237 * 119.99828 * 359.78829 * 19 18 17 27 27 C 1.38233 * 119.99927 * 359.96048 * 26 19 18 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 33 33 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 34 34 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 35 35 H 1.08003 * 120.00255 * 359.97438 * 17 16 15 36 36 H 1.08002 * 120.00176 * 180.25273 * 18 17 16 37 37 H 1.09003 * 109.46923 * 180.02562 * 23 20 19 38 38 H 1.07998 * 120.00136 * 179.97438 * 26 19 18 39 39 H 1.08007 * 119.99669 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.6998 0.2399 4.7413 17 6 3.8488 0.9698 4.9818 18 6 3.8930 1.8614 6.0372 19 6 2.7916 2.0159 6.8581 20 16 2.8500 3.1479 8.2071 21 8 3.8161 4.1127 7.8133 22 8 1.4929 3.5134 8.4168 23 6 3.4661 2.1617 9.5993 24 9 2.5870 1.1015 9.8449 25 9 4.7322 1.6549 9.2876 26 6 1.6445 1.2818 6.6210 27 6 1.5986 0.3940 5.5625 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7088 1.1611 -3.4845 32 1 2.2490 -1.6316 1.1527 33 1 1.9776 -1.5506 3.8326 34 1 3.6492 -1.1202 3.3980 35 1 4.7109 0.8458 4.3432 36 1 4.7893 2.4347 6.2227 37 1 3.5343 2.7899 10.4875 38 1 0.7841 1.4021 7.2626 39 1 0.7021 -0.1792 5.3770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076966184.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:18 Heat of formation + Delta-G solvation = -166.168002 kcal Electronic energy + Delta-G solvation = -27590.711765 eV Core-core repulsion = 23069.223801 eV Total energy + Delta-G solvation = -4521.487964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -49.76134 -47.91872 -39.89319 -38.51438 -37.81704 -36.69250 -34.90395 -33.14363 -32.39386 -31.21870 -29.43529 -28.11661 -27.48089 -25.29243 -23.07671 -22.82500 -20.98757 -20.08940 -19.48393 -18.91652 -18.66981 -18.18898 -17.62772 -17.19302 -16.36156 -15.98176 -15.57804 -15.39123 -15.07725 -14.97734 -14.72002 -14.60922 -14.28120 -14.17637 -14.04217 -13.68053 -13.36230 -13.30670 -12.79614 -12.77796 -12.67387 -12.51002 -12.29810 -12.13822 -11.67035 -11.35748 -11.29918 -11.12461 -10.98120 -10.91822 -10.75941 -10.36856 -10.27306 -9.52613 -9.15205 -9.11120 -8.99570 -8.59184 -7.98676 -6.15941 -4.25910 -1.03292 0.59689 1.20702 1.94433 2.83122 3.05919 3.22533 3.22669 3.26794 3.28561 3.29617 3.40099 3.53850 3.95309 4.09496 4.35245 4.55440 4.56001 4.71516 5.08080 5.16234 5.16261 5.39778 5.40582 5.46011 5.64920 5.80498 5.86696 6.00034 6.35438 6.67546 6.77907 6.91435 7.10292 7.39177 7.49924 7.64344 7.86382 8.10786 8.58386 8.72542 9.04080 9.41681 10.89938 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.027821 B = 0.002089 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.174977 B =13397.370341 C =13505.297582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.708 5.708 13 C 0.503 3.497 14 O -0.546 6.546 15 C -0.120 4.120 16 C 0.014 3.986 17 C -0.126 4.126 18 C -0.011 4.011 19 C -0.663 4.663 20 S 2.476 3.524 21 O -0.890 6.890 22 O -0.890 6.890 23 C -0.212 4.212 24 F -0.164 7.164 25 F -0.164 7.164 26 C -0.012 4.012 27 C -0.127 4.127 28 H 0.014 0.986 29 H 0.090 0.910 30 H 0.026 0.974 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 -1.530 24.727 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.356 5.356 13 C 0.287 3.713 14 O -0.425 6.425 15 C -0.160 4.160 16 C 0.014 3.986 17 C -0.145 4.145 18 C -0.031 4.031 19 C -0.754 4.754 20 S 2.647 3.353 21 O -0.887 6.887 22 O -0.887 6.887 23 C -0.347 4.347 24 F -0.146 7.146 25 F -0.146 7.146 26 C -0.031 4.031 27 C -0.146 4.146 28 H 0.033 0.967 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.170 0.830 38 H 0.160 0.840 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.896 0.251 24.682 25.164 hybrid contribution 0.655 -1.930 -0.877 2.219 sum 5.551 -1.679 23.805 24.501 Atomic orbital electron populations 1.22080 0.98447 0.99095 1.00955 1.18749 0.91036 0.93983 0.79902 0.93371 1.21169 1.32655 1.13302 0.90325 0.92116 1.24899 0.94779 0.94948 0.99097 1.69892 1.35668 1.22377 1.24070 0.86494 0.79156 0.79565 0.81782 1.21103 1.20169 1.20154 1.46533 1.65028 1.13579 1.10443 1.20122 0.79237 0.87587 0.84398 1.90712 1.50873 1.15902 1.84994 1.20953 1.04586 0.98094 0.92371 1.19813 0.93160 0.93194 0.92483 1.21147 0.98709 0.96737 0.97948 1.20853 0.96043 0.93829 0.92340 1.29695 1.03025 1.22370 1.20337 1.06911 0.75897 0.76166 0.76290 1.93659 1.62768 1.53888 1.78402 1.93659 1.31057 1.79632 1.84390 1.33129 0.81658 0.96892 1.22972 1.93091 1.66980 1.58371 1.96155 1.93091 1.38612 1.88738 1.94140 1.20847 0.95169 0.90917 0.96171 1.21134 0.98452 0.99668 0.95311 0.96671 0.89115 0.95467 0.92452 0.77838 0.87766 0.87698 0.84681 0.83951 0.83010 0.83967 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.58 2.56 -69.09 -0.18 6.41 16 3 H 0.05 1.40 7.58 -51.92 -0.39 1.00 16 4 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.68 11.32 55.43 0.63 -24.05 16 8 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.71 -13.87 5.07 -54.93 -0.28 -14.15 16 13 C 0.50 9.28 7.79 -10.98 -0.09 9.19 16 14 O -0.55 -12.61 15.70 5.56 0.09 -12.52 16 15 C -0.12 -1.48 5.83 -29.03 -0.17 -1.65 16 16 C 0.01 0.19 4.37 -104.63 -0.46 -0.27 16 17 C -0.13 -1.56 9.70 -39.59 -0.38 -1.95 16 18 C -0.01 -0.13 9.47 -39.58 -0.37 -0.51 16 19 C -0.66 -7.45 5.65 -39.58 -0.22 -7.67 16 20 S 2.48 22.32 5.39 -107.50 -0.58 21.74 16 21 O -0.89 -9.93 17.13 -57.54 -0.99 -10.91 16 22 O -0.89 -9.89 17.13 -57.54 -0.99 -10.88 16 23 C -0.21 -1.37 5.94 101.05 0.60 -0.77 16 24 F -0.16 -1.33 17.37 2.25 0.04 -1.29 16 25 F -0.16 -1.33 17.37 2.25 0.04 -1.29 16 26 C -0.01 -0.14 9.47 -39.58 -0.37 -0.51 16 27 C -0.13 -1.55 9.70 -39.58 -0.38 -1.94 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.39 6.39 8.54 -40.82 -0.35 6.04 16 33 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.14 1.33 7.57 -52.49 -0.40 0.93 16 37 H 0.15 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.14 1.31 7.57 -52.49 -0.40 0.91 16 39 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -35.48 361.20 -8.04 -43.52 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.35 Total: 4.53 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -2.08 Total: -15.46 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.35 Total: -38.20 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.88 Total: -34.31 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.08 Total: -2.58 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 22.32 SS G_CDS: -0.58 Total: 21.74 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.48 -8.04 -43.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076966184.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.644 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds