Wall clock time and date at job start Wed Apr 1 2020 04:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 120.00319 * 2 1 4 4 O 1.21276 * 120.00030 * 174.73273 * 3 2 1 5 5 C 1.50706 * 119.99492 * 355.00109 * 3 2 1 6 6 C 1.50700 * 109.46734 * 180.02562 * 5 3 2 7 7 C 1.38320 * 119.96556 * 269.72170 * 6 5 3 8 8 C 1.38279 * 120.14222 * 179.76543 * 7 6 5 9 9 C 1.38128 * 120.06261 * 0.51505 * 8 7 6 10 10 C 1.38855 * 119.93285 * 359.74084 * 9 8 7 11 11 O 1.35749 * 120.06821 * 179.97438 * 10 9 8 12 12 C 1.34831 * 116.99842 * 5.56782 * 11 10 9 13 13 H 1.07999 * 120.00366 * 354.93922 * 12 11 10 14 14 C 1.38663 * 119.99762 * 174.94134 * 12 11 10 15 15 N 1.31550 * 120.00033 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99961 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47301 * 89.99762 * 16 14 12 18 18 H 1.48500 * 109.46838 * 210.00026 * 16 14 12 19 19 H 1.48502 * 109.46892 * 329.99915 * 16 14 12 20 20 C 1.38077 * 119.96674 * 90.00020 * 6 5 3 21 21 C 1.39497 * 119.99665 * 179.97438 * 2 1 3 22 22 C 1.39409 * 120.12943 * 94.94349 * 21 2 1 23 23 C 1.38577 * 117.92068 * 179.97438 * 22 21 2 24 24 C 1.38917 * 118.01734 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 120.01943 * 179.97438 * 24 23 22 26 26 N 1.31919 * 119.96884 * 0.02562 * 24 23 22 27 27 N 1.28350 * 122.25452 * 359.72753 * 26 24 23 28 28 H 1.09003 * 109.47268 * 90.00534 * 1 2 3 29 29 H 1.09005 * 109.47340 * 210.00280 * 1 2 3 30 30 H 1.09001 * 109.47112 * 330.00613 * 1 2 3 31 31 H 1.09001 * 109.46938 * 300.00179 * 5 3 2 32 32 H 1.08994 * 109.47151 * 60.00791 * 5 3 2 33 33 H 1.08001 * 119.92997 * 0.02562 * 7 6 5 34 34 H 1.07994 * 119.97226 * 180.25780 * 8 7 6 35 35 H 1.08001 * 120.03102 * 179.72202 * 9 8 7 36 36 H 0.96998 * 120.00181 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.03692 * 359.95486 * 20 6 5 38 38 H 1.07997 * 121.04290 * 359.94788 * 22 21 2 39 39 H 1.08004 * 120.99561 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3478 1.1693 0.0964 5 6 1.3896 2.4698 -0.1137 6 6 2.3681 3.6157 -0.0904 7 6 2.7223 4.1973 1.1136 8 6 3.6235 5.2458 1.1397 9 6 4.1647 5.7225 -0.0383 10 6 3.8071 5.1443 -1.2490 11 8 4.3370 5.6109 -2.4084 12 6 5.2902 6.5592 -2.3078 13 1 5.5414 6.9720 -1.3420 14 6 5.9478 7.0045 -3.4444 15 7 5.6421 6.5013 -4.6208 16 14 7.2689 8.3178 -3.3050 17 1 8.5894 7.6714 -3.0960 18 1 7.3027 9.1204 -4.5539 19 1 6.9648 9.2056 -2.1541 20 6 2.9057 4.0877 -1.2713 21 6 2.1624 -1.2081 0.0005 22 6 2.6022 -1.7627 -1.2005 23 6 3.2910 -2.9640 -1.1467 24 6 3.5010 -3.5406 0.0996 25 17 4.3571 -5.0454 0.2273 26 7 3.0486 -2.9446 1.1861 27 7 2.4141 -1.8297 1.1420 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 0.8320 2.4876 -1.0501 32 1 0.6978 2.5653 0.7231 33 1 2.2973 3.8290 2.0356 34 1 3.9013 5.6951 2.0816 35 1 4.8651 6.5443 -0.0177 36 1 6.1019 6.8131 -5.4160 37 1 2.6259 3.6357 -2.2114 38 1 2.4118 -1.2718 -2.1434 39 1 3.6545 -3.4375 -2.0468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089810385.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:41 Heat of formation + Delta-G solvation = 36.211283 kcal Electronic energy + Delta-G solvation = -26387.785315 eV Core-core repulsion = 22323.718655 eV Total energy + Delta-G solvation = -4064.066660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74421 -40.04394 -38.86310 -37.35715 -36.62598 -35.96796 -33.70734 -32.69130 -32.22811 -31.44620 -29.22031 -27.39302 -27.30624 -25.32343 -25.21863 -24.45553 -21.74710 -21.34838 -20.01982 -18.40205 -17.88954 -17.66862 -17.47705 -17.12388 -16.85962 -15.69627 -15.44628 -15.02192 -14.86349 -14.45327 -14.39364 -14.14175 -13.84921 -13.67396 -13.44000 -13.24267 -12.97460 -12.68867 -12.53363 -12.40429 -12.11613 -11.96040 -11.88638 -11.57541 -11.28289 -10.85524 -10.81615 -10.77748 -10.62890 -10.48356 -10.43386 -10.15885 -9.90444 -9.33578 -9.21278 -8.82472 -8.08896 -7.21814 -6.43294 -4.02147 0.15848 0.24007 1.12019 1.97710 2.35347 2.40056 2.48341 2.87890 3.13805 3.15517 3.19350 3.79298 3.90246 3.97954 4.19401 4.27782 4.42364 4.62137 4.74459 4.87005 4.92244 4.98474 5.12541 5.15236 5.25648 5.28067 5.35188 5.41611 5.63081 5.73443 5.92882 6.15010 6.19031 6.32941 6.63015 6.84790 6.91873 7.07812 7.24211 7.37540 7.44152 7.81932 7.91932 8.01869 8.10039 9.02766 9.72843 10.75024 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.002275 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.583533 B =12306.060948 C =13424.845040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.578 5.578 3 C 0.524 3.476 4 O -0.497 6.497 5 C -0.084 4.084 6 C -0.039 4.039 7 C -0.195 4.195 8 C -0.074 4.074 9 C -0.229 4.229 10 C 0.154 3.846 11 O -0.179 6.179 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.865 5.865 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.268 1.268 20 C -0.173 4.173 21 C 0.306 3.694 22 C -0.088 4.088 23 C -0.096 4.096 24 C 0.111 3.889 25 Cl -0.002 7.002 26 N -0.216 5.216 27 N -0.216 5.216 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.269 0.731 37 H 0.114 0.886 38 H 0.165 0.835 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.550 -18.122 6.200 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.315 5.315 3 C 0.313 3.687 4 O -0.367 6.367 5 C -0.124 4.124 6 C -0.040 4.040 7 C -0.214 4.214 8 C -0.092 4.092 9 C -0.248 4.248 10 C 0.100 3.900 11 O -0.083 6.083 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.500 5.500 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.193 4.193 21 C 0.073 3.927 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.060 4.060 25 Cl 0.026 6.974 26 N -0.061 5.061 27 N -0.061 5.061 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.182 0.818 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.913 -18.242 7.432 22.519 hybrid contribution 0.945 0.467 -1.386 1.741 sum -9.968 -17.775 6.046 21.257 Atomic orbital electron populations 1.21976 0.76761 1.04415 1.02836 1.45375 1.07458 1.02100 1.76580 1.21147 0.88303 0.84162 0.75114 1.90813 1.14209 1.86332 1.45352 1.20609 0.97794 0.89046 1.04940 1.18633 0.97189 0.94806 0.93333 1.20370 1.04075 1.00927 0.96011 1.20694 0.95722 0.95855 0.96954 1.21200 1.06467 1.04833 0.92298 1.19262 0.92246 0.91745 0.86701 1.83970 1.48532 1.50735 1.25069 1.21320 1.14344 1.15465 0.95559 0.89109 1.25271 0.98242 0.98699 0.94288 1.70033 1.40523 1.41281 0.98153 0.85722 0.80017 0.79545 0.78220 1.19898 1.20271 1.19199 1.19922 1.02677 0.99298 0.97370 1.19850 0.93563 0.89001 0.90318 1.22644 0.94619 0.94225 1.00431 1.22247 0.96917 0.95032 0.98340 1.23598 0.97444 0.92411 0.92594 1.98436 1.73641 1.26880 1.98434 1.72970 1.05612 1.02262 1.25230 1.73152 1.07669 1.00929 1.24379 0.91363 0.90691 0.89388 0.87599 0.87725 0.87816 0.87380 0.85560 0.92090 0.86791 0.81784 0.81605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 10.19 59.85 0.61 1.11 16 2 N -0.58 -6.39 2.99 -122.61 -0.37 -6.75 16 3 C 0.52 7.52 7.62 -10.98 -0.08 7.44 16 4 O -0.50 -9.80 16.01 5.56 0.09 -9.71 16 5 C -0.08 -1.04 4.50 -29.03 -0.13 -1.17 16 6 C -0.04 -0.69 4.37 -104.65 -0.46 -1.15 16 7 C -0.19 -3.47 9.70 -39.54 -0.38 -3.86 16 8 C -0.07 -1.41 10.04 -39.61 -0.40 -1.81 16 9 C -0.23 -5.12 9.17 -39.39 -0.36 -5.48 16 10 C 0.15 3.79 6.65 -39.11 -0.26 3.53 16 11 O -0.18 -5.17 9.76 0.05 0.00 -5.17 16 12 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 13 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 14 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 15 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 16 Si 0.94 20.77 29.55 -169.99 -5.02 15.74 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 C -0.17 -3.68 9.65 -39.40 -0.38 -4.06 16 21 C 0.31 3.71 5.56 -154.44 -0.86 2.86 16 22 C -0.09 -0.84 10.13 -39.02 -0.40 -1.24 16 23 C -0.10 -0.80 9.99 -39.20 -0.39 -1.19 16 24 C 0.11 1.17 7.37 -17.26 -0.13 1.04 16 25 Cl 0.00 -0.02 29.13 -51.86 -1.51 -1.53 16 26 N -0.22 -2.88 11.48 32.90 0.38 -2.50 16 27 N -0.22 -3.04 11.53 31.29 0.36 -2.68 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 30 H 0.09 0.40 6.48 -51.93 -0.34 0.06 16 31 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.10 0.95 7.19 -51.93 -0.37 0.58 16 33 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 35 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -36.77 362.75 -7.06 -43.83 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.79 Total: 1.80 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -3.42 Total: -13.76 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 1.13 Total: -36.67 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.09 Total: -14.88 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.51 Total: -1.53 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.77 -7.06 -43.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089810385.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.041 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds