Wall clock time and date at job start Wed Apr 1 2020 04:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 120.00319 * 2 1 4 4 O 1.21276 * 120.00030 * 174.73273 * 3 2 1 5 5 C 1.50706 * 119.99492 * 355.00109 * 3 2 1 6 6 C 1.50700 * 109.46734 * 180.02562 * 5 3 2 7 7 C 1.38320 * 119.96556 * 269.72170 * 6 5 3 8 8 C 1.38279 * 120.14222 * 179.76543 * 7 6 5 9 9 C 1.38128 * 120.06261 * 0.51505 * 8 7 6 10 10 C 1.38855 * 119.93285 * 359.74084 * 9 8 7 11 11 O 1.35749 * 120.06821 * 179.97438 * 10 9 8 12 12 C 1.34831 * 116.99842 * 5.56782 * 11 10 9 13 13 H 1.07999 * 120.00366 * 354.93922 * 12 11 10 14 14 C 1.38663 * 119.99762 * 174.94134 * 12 11 10 15 15 N 1.31550 * 120.00033 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99961 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47301 * 89.99762 * 16 14 12 18 18 H 1.48500 * 109.46838 * 210.00026 * 16 14 12 19 19 H 1.48502 * 109.46892 * 329.99915 * 16 14 12 20 20 C 1.38077 * 119.96674 * 90.00020 * 6 5 3 21 21 C 1.39497 * 119.99665 * 179.97438 * 2 1 3 22 22 C 1.39409 * 120.12943 * 94.94349 * 21 2 1 23 23 C 1.38577 * 117.92068 * 179.97438 * 22 21 2 24 24 C 1.38917 * 118.01734 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 120.01943 * 179.97438 * 24 23 22 26 26 N 1.31919 * 119.96884 * 0.02562 * 24 23 22 27 27 N 1.28350 * 122.25452 * 359.72753 * 26 24 23 28 28 H 1.09003 * 109.47268 * 90.00534 * 1 2 3 29 29 H 1.09005 * 109.47340 * 210.00280 * 1 2 3 30 30 H 1.09001 * 109.47112 * 330.00613 * 1 2 3 31 31 H 1.09001 * 109.46938 * 300.00179 * 5 3 2 32 32 H 1.08994 * 109.47151 * 60.00791 * 5 3 2 33 33 H 1.08001 * 119.92997 * 0.02562 * 7 6 5 34 34 H 1.07994 * 119.97226 * 180.25780 * 8 7 6 35 35 H 1.08001 * 120.03102 * 179.72202 * 9 8 7 36 36 H 0.96998 * 120.00181 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.03692 * 359.95486 * 20 6 5 38 38 H 1.07997 * 121.04290 * 359.94788 * 22 21 2 39 39 H 1.08004 * 120.99561 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3478 1.1693 0.0964 5 6 1.3896 2.4698 -0.1137 6 6 2.3681 3.6157 -0.0904 7 6 2.7223 4.1973 1.1136 8 6 3.6235 5.2458 1.1397 9 6 4.1647 5.7225 -0.0383 10 6 3.8071 5.1443 -1.2490 11 8 4.3370 5.6109 -2.4084 12 6 5.2902 6.5592 -2.3078 13 1 5.5414 6.9720 -1.3420 14 6 5.9478 7.0045 -3.4444 15 7 5.6421 6.5013 -4.6208 16 14 7.2689 8.3178 -3.3050 17 1 8.5894 7.6714 -3.0960 18 1 7.3027 9.1204 -4.5539 19 1 6.9648 9.2056 -2.1541 20 6 2.9057 4.0877 -1.2713 21 6 2.1624 -1.2081 0.0005 22 6 2.6022 -1.7627 -1.2005 23 6 3.2910 -2.9640 -1.1467 24 6 3.5010 -3.5406 0.0996 25 17 4.3571 -5.0454 0.2273 26 7 3.0486 -2.9446 1.1861 27 7 2.4141 -1.8297 1.1420 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 0.8320 2.4876 -1.0501 32 1 0.6978 2.5653 0.7231 33 1 2.2973 3.8290 2.0356 34 1 3.9013 5.6951 2.0816 35 1 4.8651 6.5443 -0.0177 36 1 6.1019 6.8131 -5.4160 37 1 2.6259 3.6357 -2.2114 38 1 2.4118 -1.2718 -2.1434 39 1 3.6545 -3.4375 -2.0468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089810385.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:41 Heat of formation + Delta-G solvation = 11.450654 kcal Electronic energy + Delta-G solvation = -26388.859016 eV Core-core repulsion = 22323.718655 eV Total energy + Delta-G solvation = -4065.140361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.59404 -41.19700 -40.47209 -38.32622 -38.05041 -37.00828 -34.49060 -34.34617 -33.74472 -32.50538 -30.87306 -28.72192 -27.93571 -27.28630 -26.02560 -25.43141 -23.29676 -22.82856 -21.22399 -19.45010 -19.24260 -18.78401 -18.68566 -18.37642 -17.92246 -16.87722 -16.64248 -16.32153 -16.16279 -16.04150 -15.59031 -15.46493 -15.09968 -14.90273 -14.61172 -14.36282 -14.07026 -13.97997 -13.61266 -13.47685 -13.31324 -13.00686 -12.94286 -12.82345 -12.67978 -12.50645 -12.37310 -12.22384 -12.10398 -11.56236 -11.30802 -11.23952 -11.19699 -10.82696 -10.78201 -10.05168 -9.65097 -8.97925 -8.47219 -6.15101 -0.64107 -0.52556 0.34284 0.50422 0.75495 1.33887 1.36542 1.42827 1.51132 1.52693 2.06765 2.17354 2.80983 3.00328 3.10570 3.18214 3.42764 3.54874 3.55178 3.69988 3.92887 4.01512 4.10441 4.26320 4.32771 4.39739 4.53265 4.57160 4.60690 4.63999 4.73081 4.75219 4.91638 5.05329 5.13200 5.30247 5.36472 5.64469 5.72424 5.74927 5.96982 6.03026 6.24503 6.91906 6.97844 7.23646 7.78833 8.76219 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.002275 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.583533 B =12306.060948 C =13424.845040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.568 5.568 3 C 0.525 3.475 4 O -0.565 6.565 5 C -0.080 4.080 6 C -0.030 4.030 7 C -0.181 4.181 8 C -0.076 4.076 9 C -0.246 4.246 10 C 0.111 3.889 11 O -0.232 6.232 12 C -0.414 4.414 13 H 0.098 0.902 14 C -0.022 4.022 15 N -0.920 5.920 16 Si 1.017 2.983 17 H -0.266 1.266 18 H -0.268 1.268 19 H -0.253 1.253 20 C -0.186 4.186 21 C 0.288 3.712 22 C -0.091 4.091 23 C -0.082 4.082 24 C 0.103 3.897 25 Cl 0.011 6.989 26 N -0.248 5.248 27 N -0.251 5.251 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.116 0.884 36 H 0.273 0.727 37 H 0.114 0.886 38 H 0.188 0.812 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.221 -18.961 7.501 24.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.303 5.303 3 C 0.316 3.684 4 O -0.440 6.440 5 C -0.119 4.119 6 C -0.030 4.030 7 C -0.199 4.199 8 C -0.094 4.094 9 C -0.266 4.266 10 C 0.061 3.939 11 O -0.139 6.139 12 C -0.490 4.490 13 H 0.116 0.884 14 C -0.220 4.220 15 N -0.559 5.559 16 Si 0.836 3.164 17 H -0.191 1.191 18 H -0.192 1.192 19 H -0.177 1.177 20 C -0.206 4.206 21 C 0.055 3.945 22 C -0.121 4.121 23 C -0.112 4.112 24 C -0.068 4.068 25 Cl 0.039 6.961 26 N -0.093 5.093 27 N -0.095 5.095 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.206 0.794 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -12.673 -19.129 8.792 24.573 hybrid contribution 1.256 0.446 -1.578 2.065 sum -11.417 -18.684 7.214 23.054 Atomic orbital electron populations 1.22394 0.73665 1.05827 1.05084 1.45401 1.09157 1.00933 1.74825 1.21394 0.87524 0.85414 0.74070 1.90800 1.16948 1.87353 1.48933 1.20755 0.96764 0.85638 1.08726 1.19167 0.96640 0.95397 0.91819 1.20989 1.02115 0.99186 0.97659 1.21117 0.95271 0.96043 0.96973 1.21306 1.07126 1.05117 0.93013 1.19885 0.93774 0.93571 0.86678 1.83927 1.50213 1.52351 1.27386 1.21794 1.14900 1.15963 0.96320 0.88420 1.26553 1.00614 1.01201 0.93601 1.70170 1.42750 1.43826 0.99127 0.84615 0.76452 0.76421 0.78906 1.19133 1.19249 1.17670 1.20235 1.02488 0.98717 0.99129 1.20163 0.94076 0.89411 0.90890 1.22945 0.94112 0.94545 1.00525 1.22663 0.95370 0.94323 0.98811 1.23848 0.97212 0.92842 0.92945 1.98439 1.73250 1.25931 1.98443 1.72825 1.06796 1.02769 1.26876 1.73030 1.09031 1.01727 1.25710 0.88692 0.90244 0.87124 0.84348 0.83164 0.83734 0.84019 0.86616 0.91835 0.86807 0.79447 0.77880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.19 127.77 1.30 1.88 16 2 N -0.57 -11.04 2.99 -660.22 -1.97 -13.02 16 3 C 0.53 13.79 7.62 87.66 0.67 14.46 16 4 O -0.56 -21.89 16.01 -3.02 -0.05 -21.94 16 5 C -0.08 -1.63 4.50 29.10 0.13 -1.50 16 6 C -0.03 -0.98 4.37 -19.88 -0.09 -1.06 16 7 C -0.18 -5.85 9.70 22.30 0.22 -5.63 16 8 C -0.08 -2.77 10.04 22.25 0.22 -2.55 16 9 C -0.25 -11.28 9.17 22.39 0.21 -11.07 16 10 C 0.11 5.70 6.65 22.58 0.15 5.85 16 11 O -0.23 -14.26 9.76 -22.74 -0.22 -14.49 16 12 C -0.41 -24.72 9.49 67.92 0.64 -24.08 16 13 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 14 C -0.02 -1.29 5.49 84.84 0.47 -0.83 16 15 N -0.92 -57.07 13.67 21.62 0.30 -56.77 16 16 Si 1.02 43.77 29.55 68.60 2.03 45.80 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 20 C -0.19 -7.99 9.65 22.39 0.22 -7.77 16 21 C 0.29 6.60 5.56 132.96 0.74 7.34 16 22 C -0.09 -1.56 10.13 22.63 0.23 -1.33 16 23 C -0.08 -1.22 9.99 22.51 0.22 -0.99 16 24 C 0.10 2.08 7.37 84.84 0.62 2.70 16 25 Cl 0.01 0.18 29.13 -2.72 -0.08 0.10 16 26 N -0.25 -6.58 11.48 -49.83 -0.57 -7.15 16 27 N -0.25 -6.92 11.53 -54.91 -0.63 -7.55 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.63 8.05 -2.38 -0.02 0.61 16 30 H 0.11 0.42 6.48 -2.39 -0.02 0.40 16 31 H 0.14 2.01 8.08 -2.39 -0.02 1.99 16 32 H 0.15 1.76 7.19 -2.39 -0.02 1.74 16 33 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 35 H 0.12 5.39 5.64 -2.91 -0.02 5.38 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.19 2.20 8.06 -2.91 -0.02 2.17 16 39 H 0.20 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -89.14 362.75 5.86 -83.28 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 1.11 Total: 16.33 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 5.95 Total: -24.59 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.88 Total: -84.50 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -0.27 Total: -36.43 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -0.08 Total: 0.10 kcal Total: -89.14 5.86 -83.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089810385.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.729 kcal (2) G-P(sol) polarization free energy of solvation -89.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds