Wall clock time and date at job start Wed Apr 1 2020 04:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.46497 * 119.99921 * 2 1 4 4 C 1.52997 * 109.47195 * 85.00299 * 3 2 1 5 5 O 1.42898 * 109.47319 * 64.99855 * 4 3 2 6 6 C 1.35900 * 117.00172 * 179.97438 * 5 4 3 7 7 C 1.38761 * 120.04606 * 359.72218 * 6 5 4 8 8 C 1.38131 * 119.96646 * 179.74009 * 7 6 5 9 9 C 1.38265 * 120.06854 * 0.56021 * 8 7 6 10 10 C 1.38370 * 120.09963 * 359.69479 * 9 8 7 11 11 Cl 1.73596 * 119.98693 * 180.02562 * 10 9 8 12 12 C 1.38278 * 120.02485 * 0.02562 * 10 9 8 13 13 S 1.65596 * 119.99582 * 179.97438 * 2 1 3 14 14 O 1.42106 * 104.28068 * 26.07236 * 13 2 1 15 15 O 1.42106 * 104.27503 * 153.92481 * 13 2 1 16 16 C 1.81394 * 104.45041 * 269.99873 * 13 2 1 17 17 C 1.53005 * 109.47333 * 180.02562 * 16 13 2 18 18 C 1.50694 * 109.47178 * 180.02562 * 17 16 13 19 19 H 1.07995 * 120.00135 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99929 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99971 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00159 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47155 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47225 * 120.00108 * 22 20 18 25 25 H 1.48506 * 109.47155 * 239.99886 * 22 20 18 26 26 H 1.08994 * 109.47210 * 89.99568 * 1 2 3 27 27 H 1.09000 * 109.46844 * 210.00466 * 1 2 3 28 28 H 1.09004 * 109.46827 * 330.00088 * 1 2 3 29 29 H 1.09001 * 109.47117 * 324.99635 * 3 2 1 30 30 H 1.09004 * 109.46581 * 205.00288 * 3 2 1 31 31 H 1.09002 * 109.47153 * 304.99547 * 4 3 2 32 32 H 1.09001 * 109.46832 * 184.99738 * 4 3 2 33 33 H 1.07994 * 120.01556 * 0.02613 * 7 6 5 34 34 H 1.08005 * 119.96575 * 180.24959 * 8 7 6 35 35 H 1.08000 * 119.95031 * 179.71714 * 9 8 7 36 36 H 1.08006 * 120.03196 * 180.02562 * 12 10 9 37 37 H 1.08997 * 109.47300 * 300.00222 * 16 13 2 38 38 H 1.08998 * 109.47590 * 60.00248 * 16 13 2 39 39 H 1.09005 * 109.47101 * 300.00101 * 17 16 13 40 40 H 1.08998 * 109.46865 * 59.99455 * 17 16 13 41 41 H 0.97000 * 120.00033 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3438 1.7732 1.4370 5 8 3.1600 0.8655 2.1798 6 6 3.3910 1.1693 3.4842 7 6 2.8479 2.3208 4.0360 8 6 3.0793 2.6252 5.3634 9 6 3.8611 1.7898 6.1396 10 6 4.4085 0.6436 5.5907 11 17 5.3890 -0.4036 6.5682 12 6 4.1746 0.3319 4.2640 13 16 2.2930 -1.4342 0.0006 14 8 1.3969 -2.3565 -0.6042 15 8 3.5395 -1.1195 -0.6048 16 6 2.5193 -1.8254 1.7574 17 6 3.2819 -3.1450 1.8919 18 6 3.4693 -3.4703 3.3514 19 1 3.0836 -2.8025 4.1073 20 6 4.1342 -4.6201 3.7215 21 7 4.6044 -5.4331 2.8008 22 14 4.3673 -5.0230 5.5306 23 1 3.7508 -3.9557 6.3588 24 1 3.7188 -6.3237 5.8356 25 1 5.8181 -5.1097 5.8356 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6502 2.0043 -0.5895 30 1 3.1858 1.1176 -0.4344 31 1 1.3595 1.8397 1.9006 32 1 2.8096 2.7587 1.4304 33 1 2.2408 2.9762 3.4293 34 1 2.6533 3.5194 5.7940 35 1 4.0446 2.0321 7.1759 36 1 4.6014 -0.5630 3.8356 37 1 3.0866 -1.0279 2.2371 38 1 1.5452 -1.9178 2.2376 39 1 2.7149 -3.9429 1.4121 40 1 4.2560 -3.0523 1.4118 41 1 5.0719 -6.2422 3.0612 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111326161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:28 Heat of formation + Delta-G solvation = -89.543359 kcal Electronic energy + Delta-G solvation = -27221.151897 eV Core-core repulsion = 23254.783306 eV Total energy + Delta-G solvation = -3966.368590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30788 -37.99595 -36.57644 -36.40150 -35.92223 -35.32800 -33.79224 -31.31116 -30.99167 -30.41425 -29.31830 -26.21389 -25.46790 -23.60187 -22.74586 -21.74460 -21.20480 -18.59247 -18.52754 -17.54413 -16.57756 -16.41988 -16.25715 -16.03563 -15.51616 -15.43783 -15.01272 -14.54530 -14.46837 -14.17476 -13.68896 -13.44584 -13.24894 -13.15670 -12.87003 -12.44204 -12.33814 -12.33266 -11.92702 -11.68345 -11.61941 -11.52112 -11.36781 -11.23452 -11.09364 -10.98519 -10.89177 -10.80552 -10.78987 -10.30981 -10.14869 -9.68985 -9.27204 -8.84749 -8.78164 -8.43023 -8.32682 -6.05377 -4.09619 0.85089 1.08882 1.29551 2.14117 2.99239 3.10602 3.29924 3.37853 3.42632 3.58609 4.35159 4.45653 4.57122 4.61243 4.71415 4.78624 4.83915 4.87765 5.03286 5.08291 5.19933 5.30409 5.31439 5.38741 5.43875 5.61573 5.73277 5.78580 5.80077 5.88887 6.06767 6.11451 6.21182 6.33594 6.43887 6.62040 6.73538 7.27727 7.40661 7.45960 7.89155 8.26505 8.94403 9.55137 11.05810 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.007845 B = 0.006082 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3568.274356 B = 4602.918981 C = 7645.572320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.010 6.010 3 C 0.118 3.882 4 C 0.031 3.969 5 O -0.307 6.307 6 C 0.144 3.856 7 C -0.207 4.207 8 C -0.075 4.075 9 C -0.152 4.152 10 C 0.007 3.993 11 Cl -0.058 7.058 12 C -0.134 4.134 13 S 2.588 3.412 14 O -0.969 6.969 15 O -0.964 6.964 16 C -0.592 4.592 17 C 0.030 3.970 18 C -0.510 4.510 19 H 0.062 0.938 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.887 3.113 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.282 1.282 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.158 0.842 37 H 0.141 0.859 38 H 0.113 0.887 39 H 0.029 0.971 40 H 0.032 0.968 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 20.285 1.775 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.845 5.845 3 C -0.008 4.008 4 C -0.046 4.046 5 O -0.221 6.221 6 C 0.099 3.901 7 C -0.226 4.226 8 C -0.093 4.093 9 C -0.171 4.171 10 C -0.020 4.020 11 Cl -0.029 7.029 12 C -0.153 4.153 13 S 2.687 3.313 14 O -0.959 6.959 15 O -0.954 6.954 16 C -0.725 4.725 17 C -0.009 4.009 18 C -0.550 4.550 19 H 0.080 0.920 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.714 3.286 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.208 1.208 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.175 0.825 37 H 0.158 0.842 38 H 0.131 0.869 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.746 19.436 0.870 20.286 hybrid contribution -0.087 -0.025 1.822 1.824 sum -5.833 19.411 2.692 20.446 Atomic orbital electron populations 1.21408 0.78855 1.02756 1.01982 1.57714 1.14790 1.21487 1.90525 1.21417 0.99292 0.86610 0.93464 1.23530 0.94753 0.93128 0.93155 1.86119 1.67298 1.48763 1.19924 1.18713 0.94618 0.93156 0.83648 1.21276 1.05706 0.98463 0.97135 1.20795 0.96743 0.98800 0.92974 1.20939 1.00753 0.94535 1.00868 1.20614 0.96732 0.92962 0.91723 1.98402 1.68717 1.65928 1.69843 1.20642 1.00977 1.01755 0.91971 1.05808 0.73512 0.72426 0.79568 1.93529 1.64980 1.61830 1.75568 1.93508 1.43728 1.82669 1.75491 1.30639 1.10353 1.11185 1.20349 1.18945 0.94857 0.87110 0.99952 1.20999 1.36502 1.06788 0.90716 0.91961 1.25005 0.95417 0.96176 0.97523 1.69966 1.37585 1.12722 1.32701 0.86585 0.78119 0.78524 0.85333 1.19141 1.20943 1.20781 0.92563 0.90928 0.91558 0.88079 0.87472 0.91185 0.90605 0.85097 0.85134 0.85087 0.82464 0.84159 0.86856 0.95231 0.95001 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.00 10.22 59.85 0.61 1.61 16 2 N -1.01 -13.40 3.06 -121.75 -0.37 -13.78 16 3 C 0.12 1.21 6.02 -4.04 -0.02 1.19 16 4 C 0.03 0.29 5.08 37.16 0.19 0.48 16 5 O -0.31 -4.22 6.71 -19.43 -0.13 -4.35 16 6 C 0.14 1.98 6.53 -39.22 -0.26 1.72 16 7 C -0.21 -2.19 9.04 -39.43 -0.36 -2.54 16 8 C -0.07 -0.74 10.04 -39.61 -0.40 -1.14 16 9 C -0.15 -1.77 9.83 -39.52 -0.39 -2.16 16 10 C 0.01 0.10 6.32 -39.52 -0.25 -0.15 16 11 Cl -0.06 -0.90 28.95 -51.86 -1.50 -2.40 16 12 C -0.13 -2.14 9.30 -39.40 -0.37 -2.51 16 13 S 2.59 49.00 5.25 -107.50 -0.56 48.43 16 14 O -0.97 -20.90 17.09 -57.54 -0.98 -21.88 16 15 O -0.96 -20.53 16.53 -57.54 -0.95 -21.48 16 16 C -0.59 -11.96 5.77 37.16 0.21 -11.74 16 17 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 18 C -0.51 -14.08 9.11 -34.44 -0.31 -14.40 16 19 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 22 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.80 7.79 -51.93 -0.40 0.40 16 28 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 29 H 0.10 0.66 8.11 -51.93 -0.42 0.24 16 30 H 0.11 1.27 6.82 -51.93 -0.35 0.92 16 31 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 32 H 0.08 0.51 7.65 -51.93 -0.40 0.12 16 33 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 34 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.16 2.89 7.70 -52.48 -0.40 2.48 16 37 H 0.14 2.69 3.75 -51.93 -0.19 2.49 16 38 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -35.47 368.02 -10.22 -45.69 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.40 Total: 1.01 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: -1.57 Total: -27.35 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.36 Total: -39.83 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -2.06 Total: -47.71 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 49.00 SS G_CDS: -0.56 Total: 48.43 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.47 -10.22 -45.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111326161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.852 kcal (2) G-P(sol) polarization free energy of solvation -35.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds