Wall clock time and date at job start Wed Apr 1 2020 04:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.46497 * 119.99921 * 2 1 4 4 C 1.52997 * 109.47195 * 85.00299 * 3 2 1 5 5 O 1.42898 * 109.47319 * 64.99855 * 4 3 2 6 6 C 1.35900 * 117.00172 * 179.97438 * 5 4 3 7 7 C 1.38761 * 120.04606 * 359.72218 * 6 5 4 8 8 C 1.38131 * 119.96646 * 179.74009 * 7 6 5 9 9 C 1.38265 * 120.06854 * 0.56021 * 8 7 6 10 10 C 1.38370 * 120.09963 * 359.69479 * 9 8 7 11 11 Cl 1.73596 * 119.98693 * 180.02562 * 10 9 8 12 12 C 1.38278 * 120.02485 * 0.02562 * 10 9 8 13 13 S 1.65596 * 119.99582 * 179.97438 * 2 1 3 14 14 O 1.42106 * 104.28068 * 26.07236 * 13 2 1 15 15 O 1.42106 * 104.27503 * 153.92481 * 13 2 1 16 16 C 1.81394 * 104.45041 * 269.99873 * 13 2 1 17 17 C 1.53005 * 109.47333 * 180.02562 * 16 13 2 18 18 C 1.50694 * 109.47178 * 180.02562 * 17 16 13 19 19 H 1.07995 * 120.00135 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99929 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99971 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00159 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47155 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47225 * 120.00108 * 22 20 18 25 25 H 1.48506 * 109.47155 * 239.99886 * 22 20 18 26 26 H 1.08994 * 109.47210 * 89.99568 * 1 2 3 27 27 H 1.09000 * 109.46844 * 210.00466 * 1 2 3 28 28 H 1.09004 * 109.46827 * 330.00088 * 1 2 3 29 29 H 1.09001 * 109.47117 * 324.99635 * 3 2 1 30 30 H 1.09004 * 109.46581 * 205.00288 * 3 2 1 31 31 H 1.09002 * 109.47153 * 304.99547 * 4 3 2 32 32 H 1.09001 * 109.46832 * 184.99738 * 4 3 2 33 33 H 1.07994 * 120.01556 * 0.02613 * 7 6 5 34 34 H 1.08005 * 119.96575 * 180.24959 * 8 7 6 35 35 H 1.08000 * 119.95031 * 179.71714 * 9 8 7 36 36 H 1.08006 * 120.03196 * 180.02562 * 12 10 9 37 37 H 1.08997 * 109.47300 * 300.00222 * 16 13 2 38 38 H 1.08998 * 109.47590 * 60.00248 * 16 13 2 39 39 H 1.09005 * 109.47101 * 300.00101 * 17 16 13 40 40 H 1.08998 * 109.46865 * 59.99455 * 17 16 13 41 41 H 0.97000 * 120.00033 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3438 1.7732 1.4370 5 8 3.1600 0.8655 2.1798 6 6 3.3910 1.1693 3.4842 7 6 2.8479 2.3208 4.0360 8 6 3.0793 2.6252 5.3634 9 6 3.8611 1.7898 6.1396 10 6 4.4085 0.6436 5.5907 11 17 5.3890 -0.4036 6.5682 12 6 4.1746 0.3319 4.2640 13 16 2.2930 -1.4342 0.0006 14 8 1.3969 -2.3565 -0.6042 15 8 3.5395 -1.1195 -0.6048 16 6 2.5193 -1.8254 1.7574 17 6 3.2819 -3.1450 1.8919 18 6 3.4693 -3.4703 3.3514 19 1 3.0836 -2.8025 4.1073 20 6 4.1342 -4.6201 3.7215 21 7 4.6044 -5.4331 2.8008 22 14 4.3673 -5.0230 5.5306 23 1 3.7508 -3.9557 6.3588 24 1 3.7188 -6.3237 5.8356 25 1 5.8181 -5.1097 5.8356 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6502 2.0043 -0.5895 30 1 3.1858 1.1176 -0.4344 31 1 1.3595 1.8397 1.9006 32 1 2.8096 2.7587 1.4304 33 1 2.2408 2.9762 3.4293 34 1 2.6533 3.5194 5.7940 35 1 4.0446 2.0321 7.1759 36 1 4.6014 -0.5630 3.8356 37 1 3.0866 -1.0279 2.2371 38 1 1.5452 -1.9178 2.2376 39 1 2.7149 -3.9429 1.4121 40 1 4.2560 -3.0523 1.4118 41 1 5.0719 -6.2422 3.0612 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111326161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:27 Heat of formation + Delta-G solvation = -114.290608 kcal Electronic energy + Delta-G solvation = -27222.225018 eV Core-core repulsion = 23254.783306 eV Total energy + Delta-G solvation = -3967.441711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20844 -38.92874 -38.19367 -37.47000 -37.08246 -36.80487 -35.87065 -33.10709 -32.12616 -31.30232 -30.18942 -27.60507 -27.02141 -24.54294 -23.79369 -23.34885 -22.35716 -19.90672 -19.45030 -19.11927 -18.31810 -17.55819 -17.28875 -17.08660 -16.95381 -16.66513 -16.48028 -16.00285 -15.73224 -15.16028 -14.93243 -14.55939 -14.49009 -14.42769 -14.18431 -13.89607 -13.68227 -13.46256 -13.25069 -13.11743 -12.99869 -12.85845 -12.77234 -12.72642 -12.47963 -12.37898 -12.26050 -12.16496 -12.03173 -11.74290 -11.71046 -11.61334 -11.07896 -10.65308 -9.97137 -9.83394 -9.23910 -8.26464 -6.37783 -0.66392 0.15459 0.37799 1.09920 1.33668 1.35342 1.48587 1.75369 2.22548 2.35044 2.67314 2.85209 3.07275 3.21241 3.76314 3.80553 3.95951 4.07928 4.10447 4.17376 4.19289 4.28257 4.32475 4.46400 4.52060 4.56518 4.72293 4.80700 4.86275 4.92369 5.00364 5.09531 5.19819 5.27739 5.33788 5.35370 5.38187 5.60590 5.69480 5.72895 6.08374 6.42935 6.74756 7.31436 8.86387 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.007845 B = 0.006082 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3568.274356 B = 4602.918981 C = 7645.572320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.998 5.998 3 C 0.109 3.891 4 C 0.021 3.979 5 O -0.340 6.340 6 C 0.136 3.864 7 C -0.193 4.193 8 C -0.060 4.060 9 C -0.153 4.153 10 C -0.010 4.010 11 Cl -0.082 7.082 12 C -0.175 4.175 13 S 2.609 3.391 14 O -1.000 7.000 15 O -0.994 6.994 16 C -0.594 4.594 17 C 0.028 3.972 18 C -0.519 4.519 19 H 0.070 0.930 20 C 0.005 3.995 21 N -0.934 5.934 22 Si 0.951 3.049 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.279 1.279 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.113 0.887 29 H 0.153 0.847 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.172 0.828 34 H 0.176 0.824 35 H 0.151 0.849 36 H 0.113 0.887 37 H 0.153 0.847 38 H 0.129 0.871 39 H 0.002 0.998 40 H 0.001 0.999 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 24.617 2.974 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.837 5.837 3 C -0.015 4.015 4 C -0.054 4.054 5 O -0.255 6.255 6 C 0.090 3.910 7 C -0.211 4.211 8 C -0.078 4.078 9 C -0.171 4.171 10 C -0.037 4.037 11 Cl -0.053 7.053 12 C -0.194 4.194 13 S 2.706 3.294 14 O -0.990 6.990 15 O -0.984 6.984 16 C -0.726 4.726 17 C -0.011 4.011 18 C -0.558 4.558 19 H 0.088 0.912 20 C -0.193 4.193 21 N -0.574 5.574 22 Si 0.775 3.225 23 H -0.178 1.178 24 H -0.201 1.201 25 H -0.204 1.204 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.170 0.830 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.190 0.810 34 H 0.193 0.807 35 H 0.169 0.831 36 H 0.131 0.869 37 H 0.170 0.830 38 H 0.147 0.853 39 H 0.021 0.979 40 H 0.019 0.981 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.315 23.766 2.085 25.265 hybrid contribution 0.637 -1.199 1.345 1.911 sum -7.678 22.568 3.430 24.084 Atomic orbital electron populations 1.21770 0.76455 1.04574 1.03274 1.57250 1.16046 1.20413 1.90006 1.21848 0.98689 0.85843 0.95168 1.23904 0.95933 0.93754 0.91845 1.86048 1.68343 1.50788 1.20276 1.18792 0.94678 0.93908 0.83607 1.21702 1.04573 0.97127 0.97741 1.21342 0.94810 0.99212 0.92456 1.21267 1.00322 0.93410 1.02130 1.20784 0.97676 0.94025 0.91219 1.98380 1.69616 1.67069 1.70284 1.20471 1.03737 1.01856 0.93349 1.04773 0.72961 0.73467 0.78176 1.93480 1.65557 1.64251 1.75710 1.93462 1.45841 1.83505 1.75641 1.30571 1.10383 1.08343 1.23289 1.18748 0.93779 0.89655 0.98883 1.21370 1.35939 1.06768 0.91702 0.91228 1.25915 0.95147 0.96160 1.02121 1.70097 1.38771 1.13433 1.35083 0.85581 0.78207 0.78731 0.79951 1.17805 1.20063 1.20443 0.91656 0.92048 0.86827 0.82983 0.89722 0.88413 0.87086 0.81028 0.80698 0.83093 0.86852 0.82977 0.85274 0.97946 0.98110 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 10.22 127.76 1.31 2.75 16 2 N -1.00 -24.24 3.06 -539.11 -1.65 -25.89 16 3 C 0.11 1.85 6.02 86.38 0.52 2.37 16 4 C 0.02 0.30 5.08 71.98 0.37 0.67 16 5 O -0.34 -8.83 6.71 -92.43 -0.62 -9.45 16 6 C 0.14 3.50 6.53 22.50 0.15 3.65 16 7 C -0.19 -3.17 9.04 22.37 0.20 -2.97 16 8 C -0.06 -0.90 10.04 22.25 0.22 -0.67 16 9 C -0.15 -3.15 9.83 22.31 0.22 -2.93 16 10 C -0.01 -0.30 6.32 22.31 0.14 -0.16 16 11 Cl -0.08 -2.63 28.95 -2.72 -0.08 -2.71 16 12 C -0.17 -5.75 9.30 22.39 0.21 -5.54 16 13 S 2.61 101.04 5.25 -56.49 -0.30 100.74 16 14 O -1.00 -44.31 17.09 -127.65 -2.18 -46.50 16 15 O -0.99 -44.11 16.53 -127.65 -2.11 -46.22 16 16 C -0.59 -25.04 5.77 71.98 0.42 -24.63 16 17 C 0.03 1.57 4.98 29.85 0.15 1.71 16 18 C -0.52 -30.04 9.11 25.60 0.23 -29.81 16 19 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 20 C 0.00 0.29 5.46 84.65 0.46 0.75 16 21 N -0.93 -58.91 13.29 21.45 0.28 -58.63 16 22 Si 0.95 45.75 29.54 68.60 2.03 47.77 16 23 H -0.25 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.23 7.79 -2.39 -0.02 1.21 16 28 H 0.11 0.93 8.07 -2.39 -0.02 0.92 16 29 H 0.15 1.10 8.11 -2.39 -0.02 1.08 16 30 H 0.08 1.88 6.82 -2.39 -0.02 1.86 16 31 H 0.10 0.88 7.67 -2.39 -0.02 0.86 16 32 H 0.11 0.84 7.65 -2.39 -0.02 0.82 16 33 H 0.17 1.37 6.30 -2.91 -0.02 1.35 16 34 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 35 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 36 H 0.11 4.62 7.70 -2.91 -0.02 4.60 16 37 H 0.15 6.11 3.75 -2.39 -0.01 6.10 16 38 H 0.13 4.88 8.14 -2.39 -0.02 4.86 16 39 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.02 16 41 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -85.10 368.02 1.01 -84.10 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.04 Total: 11.59 kcal Atomic # 6 Polarization: -59.39 SS G_CDS: 4.59 Total: -54.80 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -1.37 Total: -84.51 kcal Atomic # 8 Polarization: -97.26 SS G_CDS: -4.91 Total: -102.17 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 101.04 SS G_CDS: -0.30 Total: 100.74 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.08 Total: -2.71 kcal Total: -85.10 1.01 -84.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111326161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.195 kcal (2) G-P(sol) polarization free energy of solvation -85.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds