Wall clock time and date at job start Wed Apr 1 2020 04:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47138 * 2 1 4 4 C 1.53006 * 109.47243 * 119.99841 * 2 1 3 5 5 N 1.46497 * 109.47023 * 184.99806 * 4 2 1 6 6 S 1.65601 * 119.99744 * 165.00161 * 5 4 2 7 7 O 1.42099 * 104.27768 * 181.07595 * 6 5 4 8 8 O 1.42103 * 104.27610 * 308.93100 * 6 5 4 9 9 C 1.81397 * 104.45004 * 65.00138 * 6 5 4 10 10 C 1.53000 * 109.47132 * 180.02562 * 9 6 5 11 11 C 1.50701 * 109.47068 * 180.02562 * 10 9 6 12 12 H 1.08002 * 120.00215 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99965 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00058 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99925 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47331 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47239 * 120.00044 * 15 13 11 18 18 H 1.48502 * 109.47127 * 240.00079 * 15 13 11 19 19 O 1.42897 * 109.47180 * 239.99896 * 2 1 3 20 20 C 1.35906 * 116.99999 * 84.65804 * 19 2 1 21 21 C 1.38764 * 120.04855 * 174.64416 * 20 19 2 22 22 C 1.38126 * 119.96348 * 179.72440 * 21 20 19 23 23 C 1.38262 * 120.07605 * 0.25383 * 22 21 20 24 24 C 1.38371 * 120.09503 * 0.04465 * 23 22 21 25 25 Cl 1.73596 * 119.98533 * 179.97438 * 24 23 22 26 26 C 1.38277 * 120.02804 * 359.95642 * 24 23 22 27 27 H 1.08993 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46912 * 300.00090 * 1 2 3 29 29 H 1.08997 * 109.47222 * 60.00130 * 1 2 3 30 30 H 1.09000 * 109.46957 * 305.00394 * 4 2 1 31 31 H 1.08996 * 109.46740 * 65.00403 * 4 2 1 32 32 H 0.96993 * 120.00660 * 345.00344 * 5 4 2 33 33 H 1.08999 * 109.47115 * 299.99969 * 9 6 5 34 34 H 1.08996 * 109.47250 * 60.00166 * 9 6 5 35 35 H 1.08999 * 109.46983 * 299.99914 * 10 9 6 36 36 H 1.09004 * 109.47230 * 60.00139 * 10 9 6 37 37 H 0.96996 * 119.99814 * 179.97438 * 14 13 11 38 38 H 1.07990 * 120.01469 * 359.97438 * 21 20 19 39 39 H 1.08009 * 119.96282 * 180.27914 * 22 21 20 40 40 H 1.07995 * 119.95275 * 180.02562 * 23 22 21 41 41 H 1.08003 * 120.03100 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.6179 1.3109 6 16 4.2964 -0.9718 2.7191 7 8 5.6651 -0.7400 2.4155 8 8 3.6240 -0.2007 3.7053 9 6 3.9927 -2.7413 2.9784 10 6 4.6854 -3.1944 4.2652 11 6 4.4336 -4.6646 4.4802 12 1 3.8387 -5.2201 3.7704 13 6 4.9628 -5.3005 5.5833 14 7 5.6877 -4.6241 6.4474 15 14 4.6501 -7.1227 5.8502 16 1 3.8120 -7.6486 4.7428 17 1 5.9455 -7.8484 5.8776 18 1 3.9448 -7.3198 7.1421 19 8 2.0063 -0.6736 -1.1667 20 6 2.1057 0.0608 -2.3059 21 6 2.6646 -0.4980 -3.4464 22 6 2.7595 0.2482 -4.6049 23 6 2.3031 1.5531 -4.6279 24 6 1.7509 2.1152 -3.4905 25 17 1.1794 3.7540 -3.5224 26 6 1.6539 1.3719 -2.3285 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6053 -0.2617 2.1370 31 1 1.7517 -1.7715 1.2056 32 1 4.0003 -0.3421 0.5271 33 1 2.9203 -2.9174 3.0621 34 1 4.3888 -3.3055 2.1341 35 1 5.7578 -3.0182 4.1819 36 1 4.2889 -2.6302 5.1093 37 1 6.0596 -5.0715 7.2236 38 1 3.0214 -1.5171 -3.4294 39 1 3.1905 -0.1883 -5.4939 40 1 2.3779 2.1346 -5.5349 41 1 1.2225 1.8105 -1.4408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173701102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:42 Heat of formation + Delta-G solvation = -105.343002 kcal Electronic energy + Delta-G solvation = -25372.583187 eV Core-core repulsion = 21405.529473 eV Total energy + Delta-G solvation = -3967.053714 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77555 -38.40982 -36.82000 -36.61496 -35.53632 -35.28357 -33.90557 -32.12171 -31.17532 -31.11965 -30.08670 -26.04313 -25.61582 -23.87558 -22.91711 -21.74758 -21.31906 -18.95279 -18.91950 -17.52138 -17.09178 -16.53628 -16.33601 -16.21816 -15.53068 -15.43303 -15.34481 -14.80627 -14.55126 -14.30348 -14.25627 -13.64910 -13.41526 -13.33426 -13.14696 -12.75518 -12.53703 -12.40400 -12.23970 -11.86335 -11.76150 -11.62935 -11.55341 -11.54198 -11.36152 -11.16837 -11.10216 -11.02489 -10.97083 -10.42631 -10.40103 -9.83837 -9.53542 -9.32251 -9.05371 -8.64680 -8.51792 -6.13696 -4.19159 0.70661 0.75532 0.89891 1.68393 2.70028 3.08170 3.21016 3.24496 3.31871 3.35205 4.15774 4.27054 4.33988 4.37138 4.49652 4.51171 4.64433 4.67263 4.73462 4.86416 5.05831 5.13825 5.18824 5.21651 5.22680 5.41468 5.43837 5.57073 5.64498 5.72030 5.72302 5.81211 5.90109 5.93012 6.18968 6.47286 6.96094 7.01507 7.28958 7.34848 7.79622 8.16262 8.84566 9.45720 10.97372 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.002145 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.769508 B =13049.046985 C =13438.496696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.074 3.926 3 H 0.085 0.915 4 C 0.122 3.878 5 N -1.127 6.127 6 S 2.593 3.407 7 O -0.965 6.965 8 O -0.967 6.967 9 C -0.588 4.588 10 C 0.027 3.973 11 C -0.519 4.519 12 H 0.062 0.938 13 C 0.057 3.943 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 O -0.298 6.298 20 C 0.148 3.852 21 C -0.148 4.148 22 C -0.067 4.067 23 C -0.152 4.152 24 C 0.005 3.995 25 Cl -0.069 7.069 26 C -0.206 4.206 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.414 0.586 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.264 0.736 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.442 12.388 -22.466 28.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.016 3.984 3 H 0.102 0.898 4 C -0.005 4.005 5 N -0.885 5.885 6 S 2.690 3.310 7 O -0.956 6.956 8 O -0.957 6.957 9 C -0.722 4.722 10 C -0.012 4.012 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.528 5.528 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 O -0.211 6.211 20 C 0.102 3.898 21 C -0.167 4.167 22 C -0.086 4.086 23 C -0.171 4.171 24 C -0.022 4.022 25 Cl -0.040 7.040 26 C -0.226 4.226 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.248 0.752 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.979 12.930 -21.580 27.448 hybrid contribution -0.371 -1.093 -0.314 1.196 sum -11.349 11.837 -21.893 27.354 Atomic orbital electron populations 1.22368 0.93725 1.04272 1.03622 1.22769 0.94986 0.97199 0.83425 0.89765 1.21423 0.80599 1.01793 0.96709 1.55772 1.14539 1.86117 1.32043 1.05571 0.73630 0.79031 0.72719 1.93559 1.33130 1.85758 1.83135 1.93538 1.75489 1.67981 1.58709 1.30434 1.10574 1.20540 1.10638 1.18976 0.95782 0.98726 0.87708 1.21038 1.33240 0.93092 1.08501 0.91979 1.25078 0.94914 0.98747 0.95829 1.69965 1.33869 1.36325 1.12678 0.86412 0.78107 0.84565 0.78177 1.19651 1.20804 1.20802 1.86205 1.80706 1.37984 1.16252 1.18879 0.94232 0.89422 0.87245 1.20633 1.03119 1.01874 0.91024 1.20947 0.97044 0.92960 0.97607 1.20979 1.02236 0.96247 0.97672 1.20664 0.99951 0.86385 0.95179 1.98385 1.87518 1.19309 1.98744 1.21201 1.07856 0.94438 0.99065 0.90594 0.90048 0.91413 0.87987 0.90240 0.75246 0.86302 0.85975 0.94812 0.94797 0.92579 0.84300 0.84298 0.84851 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 9.17 37.16 0.34 -0.88 16 2 C 0.07 0.63 2.32 -26.73 -0.06 0.57 16 3 H 0.08 0.68 6.31 -51.93 -0.33 0.35 16 4 C 0.12 1.23 5.80 -4.04 -0.02 1.21 16 5 N -1.13 -14.08 5.85 -10.61 -0.06 -14.14 16 6 S 2.59 44.83 5.46 -107.50 -0.59 44.25 16 7 O -0.97 -19.83 18.08 -57.54 -1.04 -20.87 16 8 O -0.97 -19.25 17.50 -57.54 -1.01 -20.26 16 9 C -0.59 -10.92 6.01 37.16 0.22 -10.69 16 10 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 11 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 15 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 O -0.30 -2.90 9.60 -19.45 -0.19 -3.09 16 20 C 0.15 1.37 6.60 -39.22 -0.26 1.11 16 21 C -0.15 -1.21 9.99 -39.43 -0.39 -1.60 16 22 C -0.07 -0.46 10.04 -39.61 -0.40 -0.85 16 23 C -0.15 -1.12 9.83 -39.52 -0.39 -1.51 16 24 C 0.00 0.04 6.32 -39.52 -0.25 -0.21 16 25 Cl -0.07 -0.56 28.95 -51.86 -1.50 -2.06 16 26 C -0.21 -1.80 8.02 -39.40 -0.32 -2.12 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.44 6.90 -51.93 -0.36 0.08 16 30 H 0.10 0.98 7.69 -51.93 -0.40 0.58 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.41 4.69 8.47 -34.46 -0.29 4.40 16 33 H 0.12 1.93 8.14 -51.92 -0.42 1.51 16 34 H 0.12 2.07 8.14 -51.93 -0.42 1.64 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.14 1.10 5.43 -52.48 -0.28 0.81 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -35.08 375.24 -10.52 -45.60 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.43 Total: 1.93 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -2.08 Total: -27.45 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.67 Total: -39.74 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -2.23 Total: -44.22 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 44.83 SS G_CDS: -0.59 Total: 44.25 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.08 -10.52 -45.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173701102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.745 kcal (2) G-P(sol) polarization free energy of solvation -35.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds