Wall clock time and date at job start Wed Apr 1 2020 04:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47138 * 2 1 4 4 C 1.53006 * 109.47243 * 119.99841 * 2 1 3 5 5 N 1.46497 * 109.47023 * 184.99806 * 4 2 1 6 6 S 1.65601 * 119.99744 * 165.00161 * 5 4 2 7 7 O 1.42099 * 104.27768 * 181.07595 * 6 5 4 8 8 O 1.42103 * 104.27610 * 308.93100 * 6 5 4 9 9 C 1.81397 * 104.45004 * 65.00138 * 6 5 4 10 10 C 1.53000 * 109.47132 * 180.02562 * 9 6 5 11 11 C 1.50701 * 109.47068 * 180.02562 * 10 9 6 12 12 H 1.08002 * 120.00215 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99965 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00058 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99925 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47331 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47239 * 120.00044 * 15 13 11 18 18 H 1.48502 * 109.47127 * 240.00079 * 15 13 11 19 19 O 1.42897 * 109.47180 * 239.99896 * 2 1 3 20 20 C 1.35906 * 116.99999 * 84.65804 * 19 2 1 21 21 C 1.38764 * 120.04855 * 174.64416 * 20 19 2 22 22 C 1.38126 * 119.96348 * 179.72440 * 21 20 19 23 23 C 1.38262 * 120.07605 * 0.25383 * 22 21 20 24 24 C 1.38371 * 120.09503 * 0.04465 * 23 22 21 25 25 Cl 1.73596 * 119.98533 * 179.97438 * 24 23 22 26 26 C 1.38277 * 120.02804 * 359.95642 * 24 23 22 27 27 H 1.08993 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46912 * 300.00090 * 1 2 3 29 29 H 1.08997 * 109.47222 * 60.00130 * 1 2 3 30 30 H 1.09000 * 109.46957 * 305.00394 * 4 2 1 31 31 H 1.08996 * 109.46740 * 65.00403 * 4 2 1 32 32 H 0.96993 * 120.00660 * 345.00344 * 5 4 2 33 33 H 1.08999 * 109.47115 * 299.99969 * 9 6 5 34 34 H 1.08996 * 109.47250 * 60.00166 * 9 6 5 35 35 H 1.08999 * 109.46983 * 299.99914 * 10 9 6 36 36 H 1.09004 * 109.47230 * 60.00139 * 10 9 6 37 37 H 0.96996 * 119.99814 * 179.97438 * 14 13 11 38 38 H 1.07990 * 120.01469 * 359.97438 * 21 20 19 39 39 H 1.08009 * 119.96282 * 180.27914 * 22 21 20 40 40 H 1.07995 * 119.95275 * 180.02562 * 23 22 21 41 41 H 1.08003 * 120.03100 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.6179 1.3109 6 16 4.2964 -0.9718 2.7191 7 8 5.6651 -0.7400 2.4155 8 8 3.6240 -0.2007 3.7053 9 6 3.9927 -2.7413 2.9784 10 6 4.6854 -3.1944 4.2652 11 6 4.4336 -4.6646 4.4802 12 1 3.8387 -5.2201 3.7704 13 6 4.9628 -5.3005 5.5833 14 7 5.6877 -4.6241 6.4474 15 14 4.6501 -7.1227 5.8502 16 1 3.8120 -7.6486 4.7428 17 1 5.9455 -7.8484 5.8776 18 1 3.9448 -7.3198 7.1421 19 8 2.0063 -0.6736 -1.1667 20 6 2.1057 0.0608 -2.3059 21 6 2.6646 -0.4980 -3.4464 22 6 2.7595 0.2482 -4.6049 23 6 2.3031 1.5531 -4.6279 24 6 1.7509 2.1152 -3.4905 25 17 1.1794 3.7540 -3.5224 26 6 1.6539 1.3719 -2.3285 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6053 -0.2617 2.1370 31 1 1.7517 -1.7715 1.2056 32 1 4.0003 -0.3421 0.5271 33 1 2.9203 -2.9174 3.0621 34 1 4.3888 -3.3055 2.1341 35 1 5.7578 -3.0182 4.1819 36 1 4.2889 -2.6302 5.1093 37 1 6.0596 -5.0715 7.2236 38 1 3.0214 -1.5171 -3.4294 39 1 3.1905 -0.1883 -5.4939 40 1 2.3779 2.1346 -5.5349 41 1 1.2225 1.8105 -1.4408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173701102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:41 Heat of formation + Delta-G solvation = -129.702736 kcal Electronic energy + Delta-G solvation = -25373.639504 eV Core-core repulsion = 21405.529473 eV Total energy + Delta-G solvation = -3968.110031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.40054 -39.03877 -38.16486 -37.42308 -37.02666 -36.22670 -35.88145 -33.11211 -32.84670 -31.71296 -30.67429 -27.58264 -26.81702 -24.49234 -23.58790 -23.52332 -22.03392 -20.30190 -19.54191 -19.08406 -18.34774 -17.79267 -17.26445 -16.97379 -16.87845 -16.51454 -16.40231 -16.03881 -15.85818 -15.19093 -14.94569 -14.80141 -14.49420 -14.28148 -14.10503 -13.80576 -13.69523 -13.53642 -13.21336 -13.15422 -13.10034 -12.94515 -12.80404 -12.77016 -12.53848 -12.31482 -12.23404 -12.10269 -11.95510 -11.83695 -11.76881 -11.66702 -11.17632 -10.64684 -10.40232 -9.90878 -9.25862 -8.25342 -6.38909 -0.68172 0.11661 0.31279 1.07756 1.41779 1.42188 1.55485 1.81832 2.08468 2.38653 2.62644 2.80688 3.08335 3.25486 3.55630 3.76444 3.86737 3.92557 4.03099 4.06111 4.11407 4.16209 4.30449 4.40717 4.49651 4.60725 4.64299 4.77512 4.83101 4.84457 4.88178 5.13803 5.21332 5.28248 5.29266 5.30586 5.37410 5.64666 5.69845 6.02675 6.07745 6.32973 6.75255 7.31238 8.87096 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.002145 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.769508 B =13049.046985 C =13438.496696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.075 3.925 3 H 0.087 0.913 4 C 0.108 3.892 5 N -1.110 6.110 6 S 2.623 3.377 7 O -1.001 7.001 8 O -0.994 6.994 9 C -0.587 4.587 10 C 0.019 3.981 11 C -0.536 4.536 12 H 0.076 0.924 13 C -0.006 4.006 14 N -0.935 5.935 15 Si 0.974 3.026 16 H -0.255 1.255 17 H -0.280 1.280 18 H -0.278 1.278 19 O -0.309 6.309 20 C 0.132 3.868 21 C -0.158 4.158 22 C -0.063 4.063 23 C -0.155 4.155 24 C -0.009 4.009 25 Cl -0.071 7.071 26 C -0.214 4.214 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.423 0.577 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.005 0.995 36 H 0.009 0.991 37 H 0.267 0.733 38 H 0.146 0.854 39 H 0.167 0.833 40 H 0.150 0.850 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.862 11.544 -24.444 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.017 3.983 3 H 0.105 0.895 4 C -0.018 4.018 5 N -0.871 5.871 6 S 2.720 3.280 7 O -0.991 6.991 8 O -0.984 6.984 9 C -0.719 4.719 10 C -0.020 4.020 11 C -0.575 4.575 12 H 0.094 0.906 13 C -0.204 4.204 14 N -0.574 5.574 15 Si 0.798 3.202 16 H -0.179 1.179 17 H -0.205 1.205 18 H -0.204 1.204 19 O -0.223 6.223 20 C 0.086 3.914 21 C -0.177 4.177 22 C -0.081 4.081 23 C -0.174 4.174 24 C -0.035 4.035 25 Cl -0.042 7.042 26 C -0.233 4.233 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.258 0.742 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.023 0.977 36 H 0.027 0.973 37 H 0.076 0.924 38 H 0.164 0.836 39 H 0.184 0.816 40 H 0.168 0.832 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.405 12.083 -23.572 29.250 hybrid contribution 0.046 -0.759 0.209 0.788 sum -12.360 11.325 -23.364 28.755 Atomic orbital electron populations 1.22352 0.92184 1.04670 1.04381 1.22780 0.96075 0.96921 0.82505 0.89498 1.21780 0.78633 1.03323 0.98029 1.55274 1.15736 1.85414 1.30684 1.04387 0.72641 0.77977 0.73027 1.93505 1.35689 1.85983 1.83912 1.93501 1.75871 1.68359 1.60621 1.30330 1.11649 1.22117 1.07854 1.18837 0.94708 0.98170 0.90300 1.21550 1.32943 0.94293 1.08716 0.90568 1.26124 0.94623 1.04008 0.95639 1.70108 1.35270 1.38587 1.13462 0.85265 0.78169 0.78276 0.78526 1.17898 1.20535 1.20367 1.86171 1.81121 1.38443 1.16597 1.19059 0.95136 0.89739 0.87441 1.20895 1.03073 1.02480 0.91218 1.21279 0.96155 0.92568 0.98097 1.21269 1.01505 0.96674 0.97911 1.20841 1.00564 0.86443 0.95675 1.98381 1.87595 1.19459 1.98758 1.21277 1.08109 0.94464 0.99443 0.90374 0.88784 0.91169 0.87313 0.88666 0.74180 0.83610 0.84051 0.97659 0.97258 0.92438 0.83593 0.81554 0.83233 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.17 71.98 0.66 -1.38 16 2 C 0.07 1.15 2.32 30.60 0.07 1.22 16 3 H 0.09 1.28 6.31 -2.38 -0.02 1.27 16 4 C 0.11 1.97 5.80 86.38 0.50 2.47 16 5 N -1.11 -26.11 5.85 -187.49 -1.10 -27.21 16 6 S 2.62 89.91 5.46 -56.49 -0.31 89.60 16 7 O -1.00 -41.49 18.08 -127.65 -2.31 -43.79 16 8 O -0.99 -39.53 17.50 -127.65 -2.23 -41.76 16 9 C -0.59 -21.33 6.01 71.98 0.43 -20.89 16 10 C 0.02 0.96 4.98 29.85 0.15 1.11 16 11 C -0.54 -29.32 9.11 25.60 0.23 -29.09 16 12 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 13 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 14 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 15 Si 0.97 42.98 29.54 68.60 2.03 45.00 16 16 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 19 O -0.31 -5.54 9.60 -92.50 -0.89 -6.43 16 20 C 0.13 2.27 6.60 22.50 0.15 2.42 16 21 C -0.16 -2.32 9.99 22.37 0.22 -2.09 16 22 C -0.06 -0.71 10.04 22.25 0.22 -0.49 16 23 C -0.15 -1.98 9.83 22.31 0.22 -1.76 16 24 C -0.01 -0.13 6.32 22.31 0.14 0.01 16 25 Cl -0.07 -1.09 28.95 -2.72 -0.08 -1.17 16 26 C -0.21 -3.49 8.02 22.39 0.18 -3.31 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.07 0.79 6.90 -2.39 -0.02 0.77 16 30 H 0.11 1.88 7.69 -2.39 -0.02 1.86 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.42 8.97 8.47 -96.76 -0.82 8.15 16 33 H 0.15 4.44 8.14 -2.39 -0.02 4.42 16 34 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 35 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 38 H 0.15 1.84 8.06 -2.92 -0.02 1.82 16 39 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.15 2.12 5.43 -2.91 -0.02 2.10 16 Total: -1.00 -76.38 375.24 -0.72 -77.10 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.24 Total: 16.63 kcal Atomic # 6 Polarization: -55.29 SS G_CDS: 3.64 Total: -51.65 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -0.81 Total: -83.53 kcal Atomic # 8 Polarization: -86.55 SS G_CDS: -5.43 Total: -91.98 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 89.91 SS G_CDS: -0.31 Total: 89.60 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -76.38 -0.72 -77.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173701102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.603 kcal (2) G-P(sol) polarization free energy of solvation -76.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds