Wall clock time and date at job start Wed Apr 1 2020 04:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47373 * 2 1 4 4 C 1.52996 * 109.47106 * 239.99692 * 2 1 3 5 5 N 1.46498 * 109.47251 * 179.97438 * 4 2 1 6 6 S 1.65599 * 120.00019 * 165.00026 * 5 4 2 7 7 O 1.42102 * 104.27825 * 181.07356 * 6 5 4 8 8 O 1.42107 * 104.28092 * 308.93100 * 6 5 4 9 9 C 1.81401 * 104.45073 * 65.00287 * 6 5 4 10 10 C 1.53006 * 109.47182 * 180.02562 * 9 6 5 11 11 C 1.50701 * 109.46874 * 179.97438 * 10 9 6 12 12 H 1.08006 * 119.99728 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99937 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99618 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00084 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47018 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46997 * 119.99875 * 15 13 11 18 18 H 1.48496 * 109.47241 * 240.00319 * 15 13 11 19 19 O 1.42904 * 109.47434 * 119.99781 * 2 1 3 20 20 C 1.35892 * 117.00314 * 275.01063 * 19 2 1 21 21 C 1.38763 * 120.04672 * 5.43257 * 20 19 2 22 22 C 1.38130 * 119.97103 * 179.97438 * 21 20 19 23 23 C 1.38263 * 120.06864 * 0.02562 * 22 21 20 24 24 C 1.38364 * 120.10022 * 0.02562 * 23 22 21 25 25 Cl 1.73594 * 119.98890 * 179.97438 * 24 23 22 26 26 C 1.38285 * 120.02683 * 359.97438 * 24 23 22 27 27 H 1.08995 * 109.47152 * 60.00104 * 1 2 3 28 28 H 1.08998 * 109.46709 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46644 * 300.00122 * 1 2 3 30 30 H 1.08996 * 109.47570 * 300.00027 * 4 2 1 31 31 H 1.09000 * 109.47371 * 59.99873 * 4 2 1 32 32 H 0.96997 * 120.00711 * 345.00535 * 5 4 2 33 33 H 1.08997 * 109.47190 * 300.00202 * 9 6 5 34 34 H 1.09001 * 109.47014 * 60.00002 * 9 6 5 35 35 H 1.08994 * 109.47129 * 299.99652 * 10 9 6 36 36 H 1.09001 * 109.47148 * 60.00080 * 10 9 6 37 37 H 0.96999 * 119.99388 * 180.02562 * 14 13 11 38 38 H 1.08001 * 120.01496 * 0.25929 * 21 20 19 39 39 H 1.08001 * 119.96838 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.95337 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.03710 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7208 -1.2495 6 16 4.3331 -1.7348 -2.2636 7 8 5.7007 -1.4803 -1.9735 8 8 3.7594 -3.0131 -2.0263 9 6 3.9160 -1.1491 -3.9290 10 6 4.6287 -2.0170 -4.9682 11 6 4.2816 -1.5309 -6.3518 12 1 3.6187 -0.6875 -6.4773 13 6 4.8103 -2.1627 -7.4573 14 7 5.6171 -3.1899 -7.3044 15 14 4.3796 -1.5605 -9.1723 16 1 3.4596 -0.3991 -9.0726 17 1 5.6196 -1.1499 -9.8787 18 1 3.7177 -2.6534 -9.9290 19 8 2.0064 -0.6736 1.1668 20 6 2.1124 0.0625 2.3042 21 6 1.6599 1.3741 2.3276 22 6 1.7680 2.1207 3.4847 23 6 2.3270 1.5628 4.6195 24 6 2.7801 0.2556 4.5990 25 17 3.4822 -0.4418 6.0253 26 6 2.6740 -0.4956 3.4429 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2076 -2.1392 32 1 3.9900 -0.1266 -0.6558 33 1 2.8383 -1.2155 -4.0782 34 1 4.2350 -0.1128 -4.0402 35 1 5.7063 -1.9510 -4.8193 36 1 4.3092 -3.0532 -4.8569 37 1 5.9894 -3.6342 -8.0821 38 1 1.2193 1.8094 1.4429 39 1 1.4154 3.1414 3.5030 40 1 2.4110 2.1484 5.5231 41 1 3.0280 -1.5157 3.4266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173701115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:45 Heat of formation + Delta-G solvation = -104.085848 kcal Electronic energy + Delta-G solvation = -25317.380341 eV Core-core repulsion = 21350.381141 eV Total energy + Delta-G solvation = -3966.999200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74966 -38.41259 -36.75129 -36.57430 -35.50614 -35.28253 -33.91640 -32.20898 -31.18710 -30.98067 -30.11751 -26.04820 -25.62801 -23.77453 -23.05883 -21.73939 -21.26999 -19.08243 -18.76046 -17.52260 -17.05314 -16.50596 -16.33308 -16.10162 -15.59995 -15.49133 -15.34342 -14.77934 -14.56134 -14.22616 -14.07300 -13.80840 -13.59080 -13.30360 -13.11324 -12.72495 -12.53320 -12.41915 -12.20317 -11.81032 -11.77458 -11.59643 -11.55611 -11.50839 -11.37259 -11.11760 -11.10881 -10.97910 -10.96869 -10.42868 -10.41276 -9.84835 -9.54237 -9.26707 -9.06127 -8.63908 -8.52874 -6.14630 -4.20340 0.70501 0.76083 0.93771 1.66778 2.79474 3.10842 3.22064 3.23436 3.30712 3.33690 4.15026 4.26270 4.35504 4.39539 4.45264 4.53182 4.63583 4.67831 4.75249 4.81514 4.99930 5.13341 5.19863 5.20662 5.25482 5.41462 5.46494 5.56520 5.62822 5.70129 5.76245 5.86233 5.88992 5.91239 6.13535 6.45159 6.98753 7.03852 7.28223 7.34195 7.78254 8.14984 8.83274 9.44533 10.96424 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.002078 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.415817 B =13468.783307 C =14170.957237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.076 3.924 3 H 0.083 0.917 4 C 0.120 3.880 5 N -1.125 6.125 6 S 2.593 3.407 7 O -0.966 6.966 8 O -0.964 6.964 9 C -0.590 4.590 10 C 0.027 3.973 11 C -0.520 4.520 12 H 0.062 0.938 13 C 0.057 3.943 14 N -0.889 5.889 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 O -0.295 6.295 20 C 0.149 3.851 21 C -0.209 4.209 22 C -0.067 4.067 23 C -0.153 4.153 24 C 0.005 3.995 25 Cl -0.063 7.063 26 C -0.147 4.147 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.413 0.587 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.778 12.113 22.609 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.019 3.981 3 H 0.101 0.899 4 C -0.007 4.007 5 N -0.882 5.882 6 S 2.690 3.310 7 O -0.956 6.956 8 O -0.954 6.954 9 C -0.723 4.723 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.528 5.528 15 Si 0.728 3.272 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 O -0.208 6.208 20 C 0.103 3.897 21 C -0.228 4.228 22 C -0.085 4.085 23 C -0.172 4.172 24 C -0.022 4.022 25 Cl -0.034 7.034 26 C -0.166 4.166 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.246 0.754 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.121 10.852 22.796 27.588 hybrid contribution -0.351 1.136 -1.028 1.572 sum -11.473 11.988 21.768 27.371 Atomic orbital electron populations 1.22374 0.93793 1.04359 1.03483 1.22759 0.94917 0.96905 0.83562 0.89881 1.21442 0.80459 1.03011 0.95803 1.55726 1.14263 1.60861 1.57399 1.05586 0.73749 0.74341 0.77287 1.93558 1.32778 1.85309 1.83948 1.93547 1.78709 1.38752 1.84363 1.30461 1.10860 1.11845 1.19176 1.18973 0.95647 0.94061 0.92522 1.21031 1.29449 1.15784 0.89687 0.92004 1.25081 0.94913 0.94902 0.99684 1.69966 1.31286 1.20952 1.30546 0.86408 0.78297 0.78722 0.83811 1.19681 1.20805 1.20791 1.86239 1.80585 1.37812 1.16210 1.18805 0.94053 0.90060 0.86800 1.21452 1.06630 0.94259 1.00459 1.20896 0.96442 0.99653 0.91509 1.20955 1.02521 0.93779 0.99935 1.20587 0.99426 0.93881 0.88294 1.98388 1.82567 1.84495 1.37978 1.20283 1.04375 1.01869 0.90115 0.90132 0.90587 0.91387 0.88852 0.89394 0.75433 0.86341 0.86079 0.94799 0.94763 0.92557 0.84517 0.84783 0.84866 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 9.17 37.16 0.34 -0.78 16 2 C 0.08 0.62 2.31 -26.73 -0.06 0.56 16 3 H 0.08 0.53 6.31 -51.93 -0.33 0.20 16 4 C 0.12 1.18 5.82 -4.04 -0.02 1.16 16 5 N -1.13 -13.96 5.75 -10.62 -0.06 -14.02 16 6 S 2.59 45.32 5.46 -107.50 -0.59 44.74 16 7 O -0.97 -20.01 18.08 -57.54 -1.04 -21.05 16 8 O -0.96 -19.85 17.50 -57.54 -1.01 -20.86 16 9 C -0.59 -10.77 6.01 37.16 0.22 -10.54 16 10 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 11 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 12 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 15 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 O -0.30 -3.15 9.66 -19.40 -0.19 -3.34 16 20 C 0.15 1.46 6.60 -39.22 -0.26 1.20 16 21 C -0.21 -1.58 8.25 -39.43 -0.33 -1.91 16 22 C -0.07 -0.45 10.04 -39.61 -0.40 -0.84 16 23 C -0.15 -1.15 9.83 -39.53 -0.39 -1.54 16 24 C 0.00 0.04 6.32 -39.52 -0.25 -0.20 16 25 Cl -0.06 -0.56 28.95 -51.86 -1.50 -2.06 16 26 C -0.15 -1.49 9.77 -39.40 -0.38 -1.87 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.38 6.91 -51.93 -0.36 0.02 16 30 H 0.09 1.02 7.69 -51.93 -0.40 0.62 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.41 4.52 8.62 -34.46 -0.30 4.22 16 33 H 0.12 1.87 8.14 -51.93 -0.42 1.45 16 34 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.14 0.77 5.43 -52.49 -0.28 0.49 16 39 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -35.75 375.39 -10.52 -46.28 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.44 Total: 1.48 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: -2.08 Total: -27.19 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.68 Total: -39.56 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -2.23 Total: -45.25 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 45.32 SS G_CDS: -0.59 Total: 44.74 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.75 -10.52 -46.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173701115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.809 kcal (2) G-P(sol) polarization free energy of solvation -35.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds