Wall clock time and date at job start Wed Apr 1 2020 04:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47373 * 2 1 4 4 C 1.52996 * 109.47106 * 239.99692 * 2 1 3 5 5 N 1.46498 * 109.47251 * 179.97438 * 4 2 1 6 6 S 1.65599 * 120.00019 * 165.00026 * 5 4 2 7 7 O 1.42102 * 104.27825 * 181.07356 * 6 5 4 8 8 O 1.42107 * 104.28092 * 308.93100 * 6 5 4 9 9 C 1.81401 * 104.45073 * 65.00287 * 6 5 4 10 10 C 1.53006 * 109.47182 * 180.02562 * 9 6 5 11 11 C 1.50701 * 109.46874 * 179.97438 * 10 9 6 12 12 H 1.08006 * 119.99728 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99937 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99618 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00084 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47018 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46997 * 119.99875 * 15 13 11 18 18 H 1.48496 * 109.47241 * 240.00319 * 15 13 11 19 19 O 1.42904 * 109.47434 * 119.99781 * 2 1 3 20 20 C 1.35892 * 117.00314 * 275.01063 * 19 2 1 21 21 C 1.38763 * 120.04672 * 5.43257 * 20 19 2 22 22 C 1.38130 * 119.97103 * 179.97438 * 21 20 19 23 23 C 1.38263 * 120.06864 * 0.02562 * 22 21 20 24 24 C 1.38364 * 120.10022 * 0.02562 * 23 22 21 25 25 Cl 1.73594 * 119.98890 * 179.97438 * 24 23 22 26 26 C 1.38285 * 120.02683 * 359.97438 * 24 23 22 27 27 H 1.08995 * 109.47152 * 60.00104 * 1 2 3 28 28 H 1.08998 * 109.46709 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46644 * 300.00122 * 1 2 3 30 30 H 1.08996 * 109.47570 * 300.00027 * 4 2 1 31 31 H 1.09000 * 109.47371 * 59.99873 * 4 2 1 32 32 H 0.96997 * 120.00711 * 345.00535 * 5 4 2 33 33 H 1.08997 * 109.47190 * 300.00202 * 9 6 5 34 34 H 1.09001 * 109.47014 * 60.00002 * 9 6 5 35 35 H 1.08994 * 109.47129 * 299.99652 * 10 9 6 36 36 H 1.09001 * 109.47148 * 60.00080 * 10 9 6 37 37 H 0.96999 * 119.99388 * 180.02562 * 14 13 11 38 38 H 1.08001 * 120.01496 * 0.25929 * 21 20 19 39 39 H 1.08001 * 119.96838 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.95337 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.03710 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7208 -1.2495 6 16 4.3331 -1.7348 -2.2636 7 8 5.7007 -1.4803 -1.9735 8 8 3.7594 -3.0131 -2.0263 9 6 3.9160 -1.1491 -3.9290 10 6 4.6287 -2.0170 -4.9682 11 6 4.2816 -1.5309 -6.3518 12 1 3.6187 -0.6875 -6.4773 13 6 4.8103 -2.1627 -7.4573 14 7 5.6171 -3.1899 -7.3044 15 14 4.3796 -1.5605 -9.1723 16 1 3.4596 -0.3991 -9.0726 17 1 5.6196 -1.1499 -9.8787 18 1 3.7177 -2.6534 -9.9290 19 8 2.0064 -0.6736 1.1668 20 6 2.1124 0.0625 2.3042 21 6 1.6599 1.3741 2.3276 22 6 1.7680 2.1207 3.4847 23 6 2.3270 1.5628 4.6195 24 6 2.7801 0.2556 4.5990 25 17 3.4822 -0.4418 6.0253 26 6 2.6740 -0.4956 3.4429 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2076 -2.1392 32 1 3.9900 -0.1266 -0.6558 33 1 2.8383 -1.2155 -4.0782 34 1 4.2350 -0.1128 -4.0402 35 1 5.7063 -1.9510 -4.8193 36 1 4.3092 -3.0532 -4.8569 37 1 5.9894 -3.6342 -8.0821 38 1 1.2193 1.8094 1.4429 39 1 1.4154 3.1414 3.5030 40 1 2.4110 2.1484 5.5231 41 1 3.0280 -1.5157 3.4266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173701115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:45 Heat of formation + Delta-G solvation = -129.621696 kcal Electronic energy + Delta-G solvation = -25318.487658 eV Core-core repulsion = 21350.381141 eV Total energy + Delta-G solvation = -3968.106517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38395 -39.05662 -38.15110 -37.39204 -37.00587 -36.22156 -35.87877 -33.11050 -32.89998 -31.59803 -30.71935 -27.58115 -26.77772 -24.38926 -23.68327 -23.57908 -21.96564 -20.31248 -19.52057 -19.05227 -18.33408 -17.76296 -17.15805 -16.99271 -16.87097 -16.50884 -16.41223 -16.09868 -15.87823 -15.14047 -14.92366 -14.65571 -14.48694 -14.39924 -14.23347 -13.73666 -13.68977 -13.54079 -13.19289 -13.10031 -13.07364 -12.94088 -12.78537 -12.75393 -12.51383 -12.28971 -12.22970 -12.09387 -12.03166 -11.74612 -11.73390 -11.61819 -11.16452 -10.64649 -10.38464 -9.89418 -9.26600 -8.24845 -6.38721 -0.67790 0.09524 0.32806 1.02063 1.42459 1.43005 1.56164 1.84946 2.19954 2.39127 2.61911 2.83856 3.09009 3.27494 3.58893 3.80556 3.87018 3.96649 4.05855 4.10915 4.12648 4.17978 4.21676 4.43112 4.46414 4.56777 4.72843 4.78434 4.86819 4.88047 4.93401 5.14951 5.26327 5.29205 5.30321 5.31401 5.36083 5.59549 5.70124 6.05957 6.08021 6.39996 6.75922 7.31607 8.87707 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.002078 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.415817 B =13468.783307 C =14170.957237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.073 3.927 3 H 0.107 0.893 4 C 0.104 3.896 5 N -1.108 6.108 6 S 2.617 3.383 7 O -1.003 7.003 8 O -1.000 7.000 9 C -0.583 4.583 10 C 0.017 3.983 11 C -0.535 4.535 12 H 0.080 0.920 13 C -0.008 4.008 14 N -0.936 5.936 15 Si 0.975 3.025 16 H -0.252 1.252 17 H -0.281 1.281 18 H -0.280 1.280 19 O -0.322 6.322 20 C 0.133 3.867 21 C -0.205 4.205 22 C -0.061 4.061 23 C -0.155 4.155 24 C -0.007 4.007 25 Cl -0.070 7.070 26 C -0.173 4.173 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.422 0.578 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.004 0.996 36 H 0.006 0.994 37 H 0.266 0.734 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.151 0.849 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.109 15.590 22.265 30.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.016 3.984 3 H 0.125 0.875 4 C -0.021 4.021 5 N -0.869 5.869 6 S 2.714 3.286 7 O -0.993 6.993 8 O -0.990 6.990 9 C -0.716 4.716 10 C -0.022 4.022 11 C -0.574 4.574 12 H 0.098 0.902 13 C -0.206 4.206 14 N -0.576 5.576 15 Si 0.799 3.201 16 H -0.176 1.176 17 H -0.206 1.206 18 H -0.205 1.205 19 O -0.236 6.236 20 C 0.087 3.913 21 C -0.224 4.224 22 C -0.078 4.078 23 C -0.173 4.173 24 C -0.034 4.034 25 Cl -0.041 7.041 26 C -0.192 4.192 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.258 0.742 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.075 0.925 38 H 0.179 0.821 39 H 0.186 0.814 40 H 0.169 0.831 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.459 14.340 22.466 29.858 hybrid contribution 0.335 0.076 -0.827 0.896 sum -13.123 14.416 21.638 29.125 Atomic orbital electron populations 1.22372 0.92092 1.04127 1.05013 1.22946 0.96138 0.97414 0.81858 0.87540 1.21883 0.78332 1.03283 0.98625 1.55184 1.15562 1.60080 1.56087 1.04537 0.72821 0.73975 0.77257 1.93499 1.35496 1.85818 1.84525 1.93501 1.79165 1.41397 1.84916 1.30307 1.12025 1.11741 1.17488 1.18845 0.94686 0.94083 0.94550 1.21563 1.29207 1.16006 0.90590 0.90185 1.26158 0.94768 0.95010 1.04647 1.70120 1.32889 1.22661 1.31911 0.85241 0.78262 0.78665 0.77925 1.17585 1.20643 1.20544 1.86205 1.81157 1.39164 1.17105 1.18955 0.94882 0.91070 0.86375 1.21736 1.05746 0.93164 1.01708 1.21317 0.95064 1.00922 0.90544 1.21270 1.01804 0.93090 1.01174 1.20730 1.00117 0.94654 0.87865 1.98379 1.82749 1.84767 1.38184 1.20332 1.05888 1.01708 0.91277 0.87787 0.91791 0.90588 0.90332 0.85750 0.74193 0.83285 0.83453 0.97761 0.97565 0.92489 0.82137 0.81435 0.83104 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.17 71.98 0.66 -0.99 16 2 C 0.07 1.00 2.31 30.59 0.07 1.07 16 3 H 0.11 0.93 6.31 -2.39 -0.02 0.92 16 4 C 0.10 1.82 5.82 86.38 0.50 2.32 16 5 N -1.11 -25.79 5.75 -187.50 -1.08 -26.87 16 6 S 2.62 91.54 5.46 -56.49 -0.31 91.24 16 7 O -1.00 -42.39 18.08 -127.65 -2.31 -44.70 16 8 O -1.00 -42.20 17.50 -127.65 -2.23 -44.43 16 9 C -0.58 -20.53 6.01 71.98 0.43 -20.10 16 10 C 0.02 0.88 4.98 29.85 0.15 1.03 16 11 C -0.53 -28.84 9.11 25.60 0.23 -28.60 16 12 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 13 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 14 N -0.94 -56.74 13.29 21.45 0.28 -56.45 16 15 Si 0.98 42.52 29.54 68.60 2.03 44.54 16 16 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 17 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 O -0.32 -6.61 9.66 -92.33 -0.89 -7.51 16 20 C 0.13 2.47 6.60 22.50 0.15 2.62 16 21 C -0.21 -2.50 8.25 22.37 0.18 -2.32 16 22 C -0.06 -0.61 10.04 22.25 0.22 -0.38 16 23 C -0.15 -2.02 9.83 22.31 0.22 -1.80 16 24 C -0.01 -0.12 6.32 22.31 0.14 0.02 16 25 Cl -0.07 -1.24 28.95 -2.72 -0.08 -1.32 16 26 C -0.17 -3.57 9.77 22.39 0.22 -3.35 16 27 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.60 6.91 -2.39 -0.02 0.59 16 30 H 0.08 1.63 7.69 -2.39 -0.02 1.62 16 31 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.42 8.56 8.62 -96.75 -0.83 7.73 16 33 H 0.15 4.29 8.14 -2.39 -0.02 4.27 16 34 H 0.15 4.41 8.14 -2.39 -0.02 4.39 16 35 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 38 H 0.16 1.10 5.43 -2.91 -0.02 1.09 16 39 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 40 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -80.81 375.39 -0.72 -81.53 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.22 Total: 14.43 kcal Atomic # 6 Polarization: -54.11 SS G_CDS: 3.65 Total: -50.46 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -0.79 Total: -83.32 kcal Atomic # 8 Polarization: -91.20 SS G_CDS: -5.43 Total: -96.64 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 91.54 SS G_CDS: -0.31 Total: 91.24 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -80.81 -0.72 -81.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173701115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.095 kcal (2) G-P(sol) polarization free energy of solvation -80.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds