Wall clock time and date at job start Wed Apr 1 2020 04:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 113.99925 * 2 1 4 4 H 1.08997 * 109.47157 * 30.00659 * 3 2 1 5 5 C 1.53002 * 109.47168 * 149.99934 * 3 2 1 6 6 N 1.46501 * 109.47163 * 300.00298 * 5 3 2 7 7 S 1.65608 * 120.00079 * 164.99607 * 6 5 3 8 8 O 1.42095 * 104.27841 * 181.07390 * 7 6 5 9 9 O 1.42102 * 104.27658 * 308.93104 * 7 6 5 10 10 C 1.81406 * 104.44741 * 65.00031 * 7 6 5 11 11 C 1.52991 * 109.46937 * 179.97438 * 10 7 6 12 12 C 1.50698 * 109.47171 * 180.02562 * 11 10 7 13 13 H 1.08003 * 120.00001 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00289 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00291 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00036 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47096 * 89.99587 * 16 14 12 18 18 H 1.48494 * 109.47269 * 210.00123 * 16 14 12 19 19 H 1.48506 * 109.46544 * 329.99721 * 16 14 12 20 20 C 1.50691 * 109.47608 * 270.00147 * 3 2 1 21 21 C 1.38262 * 119.99413 * 324.72261 * 20 3 2 22 22 C 1.38221 * 120.02740 * 179.76687 * 21 20 3 23 23 C 1.38234 * 120.01314 * 0.50666 * 22 21 20 24 24 C 1.38327 * 119.98646 * 359.75027 * 23 22 21 25 25 Cl 1.73601 * 120.01272 * 180.02562 * 24 23 22 26 26 C 1.38198 * 119.99751 * 145.00005 * 20 3 2 27 27 H 1.09002 * 109.47193 * 299.99495 * 1 2 3 28 28 H 1.09005 * 109.47505 * 60.00007 * 1 2 3 29 29 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47445 * 180.02562 * 5 3 2 31 31 H 1.09001 * 109.46949 * 60.00166 * 5 3 2 32 32 H 0.97002 * 120.00027 * 345.00118 * 6 5 3 33 33 H 1.09000 * 109.47167 * 300.00580 * 10 7 6 34 34 H 1.09000 * 109.46895 * 59.99901 * 10 7 6 35 35 H 1.09008 * 109.47545 * 300.00011 * 11 10 7 36 36 H 1.09000 * 109.47377 * 60.00235 * 11 10 7 37 37 H 0.96998 * 120.00587 * 179.97438 * 15 14 12 38 38 H 1.08001 * 119.98688 * 359.97438 * 21 20 3 39 39 H 1.08007 * 119.99347 * 180.26165 * 22 21 20 40 40 H 1.08004 * 120.00394 * 179.72313 * 23 22 21 41 41 H 1.08006 * 120.00553 * 359.97438 * 26 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3449 1.9993 0.5139 5 6 3.3588 1.2633 0.7213 6 7 3.1602 0.8171 2.1025 7 16 4.4558 0.3211 3.0069 8 8 3.8891 -0.0541 4.2547 9 8 5.1128 -0.6331 2.1840 10 6 5.4748 1.8104 3.1926 11 6 6.7175 1.4780 4.0207 12 6 7.5637 2.7153 4.1755 13 1 7.2470 3.6457 3.7276 14 6 8.7428 2.6595 4.8881 15 7 9.4816 3.7392 5.0228 16 14 9.2917 1.0499 5.6610 17 1 10.1299 0.2969 4.6938 18 1 10.0823 1.3331 6.8857 19 1 8.0991 0.2402 6.0179 20 6 2.2144 1.7644 -1.4207 21 6 2.5651 0.8517 -2.3983 22 6 2.7480 1.2712 -3.7025 23 6 2.5906 2.6054 -4.0283 24 6 2.2450 3.5199 -3.0497 25 17 2.0465 5.1954 -3.4582 26 6 2.0569 3.0985 -1.7452 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.8020 2.2591 0.7217 31 1 4.0241 0.5694 0.2074 32 1 2.2698 0.8121 2.4873 33 1 5.7783 2.1680 2.2086 34 1 4.8979 2.5846 3.6984 35 1 6.4137 1.1207 5.0047 36 1 7.2946 0.7037 3.5152 37 1 10.3109 3.7000 5.5244 38 1 2.6929 -0.1899 -2.1433 39 1 3.0177 0.5570 -4.4666 40 1 2.7379 2.9337 -5.0466 41 1 1.7870 3.8121 -0.9807 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173986098.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:14 Heat of formation + Delta-G solvation = -105.732160 kcal Electronic energy + Delta-G solvation = -25634.736833 eV Core-core repulsion = 21667.666243 eV Total energy + Delta-G solvation = -3967.070589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.21595 -38.23979 -36.71810 -36.69930 -35.57542 -35.10811 -33.95024 -32.30640 -31.48364 -31.07317 -28.46562 -26.47839 -25.97352 -23.81876 -23.06508 -21.53262 -21.20718 -19.09213 -17.85806 -17.55409 -17.10504 -16.90154 -16.48347 -15.93664 -15.56973 -15.35062 -15.15549 -15.08757 -14.38837 -14.31499 -14.10630 -13.86932 -13.76518 -13.50883 -13.33255 -12.80184 -12.32537 -12.06426 -11.98570 -11.89712 -11.77233 -11.71116 -11.63246 -11.58314 -11.29139 -11.25309 -11.19987 -11.18666 -10.45064 -10.16218 -10.11654 -9.83073 -9.50213 -9.35293 -9.18493 -9.04102 -8.66151 -6.16475 -4.17818 0.62841 0.78579 0.84406 1.77232 2.98193 3.21314 3.27104 3.33287 3.34447 3.38698 4.13169 4.19337 4.36141 4.40191 4.54470 4.65269 4.68214 4.72249 4.90408 5.00716 5.02820 5.06843 5.15281 5.25633 5.29659 5.34247 5.40758 5.44285 5.52046 5.57056 5.77978 5.82398 5.96186 6.06056 6.27766 6.38845 6.78854 6.81625 6.92307 7.01925 7.54852 8.36422 8.84486 9.43200 10.95865 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.002784 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.644016 B =10053.571084 C =11645.330924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.127 3.873 4 H 0.081 0.919 5 C 0.122 3.878 6 N -1.120 6.120 7 S 2.592 3.408 8 O -0.966 6.966 9 O -0.964 6.964 10 C -0.584 4.584 11 C -0.007 4.007 12 C -0.520 4.520 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.869 3.131 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.262 1.262 20 C -0.104 4.104 21 C -0.086 4.086 22 C -0.109 4.109 23 C -0.107 4.107 24 C -0.037 4.037 25 Cl -0.070 7.070 26 C -0.099 4.099 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.413 0.587 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.266 0.734 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.449 -2.580 -17.990 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.285 6.285 3 C 0.067 3.933 4 H 0.099 0.901 5 C -0.005 4.005 6 N -0.877 5.877 7 S 2.689 3.311 8 O -0.956 6.956 9 O -0.953 6.953 10 C -0.717 4.717 11 C -0.047 4.047 12 C -0.559 4.559 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.534 5.534 16 Si 0.696 3.304 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.186 1.186 20 C -0.106 4.106 21 C -0.104 4.104 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.063 4.063 25 Cl -0.041 7.041 26 C -0.118 4.118 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.247 0.753 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.893 -3.437 -17.713 26.857 hybrid contribution -0.118 0.473 0.292 0.568 sum -20.011 -2.963 -17.421 26.697 Atomic orbital electron populations 1.22861 0.80849 1.03098 1.00104 1.88021 1.19759 1.26040 1.94649 1.21128 0.95384 0.85875 0.90881 0.90082 1.21409 0.96278 1.01144 0.81632 1.55592 1.24431 1.85372 1.22344 1.05564 0.74421 0.77726 0.73389 1.93559 1.76478 1.82297 1.43310 1.93551 1.75600 1.57979 1.68206 1.30312 1.12515 1.18587 1.10304 1.19407 0.91027 0.99653 0.94565 1.20848 1.05104 0.95148 1.34760 0.90423 1.24987 0.96141 0.96461 0.95527 1.69879 1.14134 1.28151 1.41196 0.86922 0.79640 0.84326 0.79548 1.19657 1.20783 1.18588 1.20234 1.00986 0.93039 0.96323 1.21202 0.96344 1.00637 0.92203 1.21183 0.99562 0.95130 0.96846 1.21130 0.99445 0.92804 0.99153 1.20871 1.04884 0.85713 0.94863 1.98385 1.95902 1.15934 1.93907 1.20928 1.00258 0.95665 0.94957 0.93705 0.93987 0.89324 0.89887 0.89003 0.75340 0.85755 0.85464 0.94908 0.95331 0.92380 0.84419 0.84809 0.84910 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.81 101.05 1.09 1.28 16 2 O -0.37 -3.53 9.37 -35.23 -0.33 -3.86 16 3 C 0.13 1.10 2.40 -27.89 -0.07 1.03 16 4 H 0.08 0.55 7.70 -51.93 -0.40 0.15 16 5 C 0.12 1.28 5.81 -4.04 -0.02 1.25 16 6 N -1.12 -13.34 5.75 -10.61 -0.06 -13.40 16 7 S 2.59 43.02 5.46 -107.50 -0.59 42.44 16 8 O -0.97 -18.74 18.08 -57.54 -1.04 -19.78 16 9 O -0.96 -18.78 17.50 -57.54 -1.01 -19.79 16 10 C -0.58 -10.38 6.01 37.15 0.22 -10.16 16 11 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 12 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 13 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -27.00 13.96 55.43 0.77 -26.22 16 16 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 20 C -0.10 -0.89 4.96 -104.63 -0.52 -1.41 16 21 C -0.09 -0.72 9.35 -39.58 -0.37 -1.09 16 22 C -0.11 -0.80 10.05 -39.59 -0.40 -1.20 16 23 C -0.11 -0.82 9.83 -39.55 -0.39 -1.21 16 24 C -0.04 -0.32 6.32 -39.50 -0.25 -0.57 16 25 Cl -0.07 -0.60 28.96 -51.86 -1.50 -2.11 16 26 C -0.10 -0.82 9.47 -39.55 -0.37 -1.20 16 27 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.06 7.69 -51.93 -0.40 0.66 16 32 H 0.41 4.12 8.62 -34.48 -0.30 3.82 16 33 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 34 H 0.13 2.04 8.14 -51.92 -0.42 1.62 16 35 H 0.03 0.77 7.20 -51.92 -0.37 0.40 16 36 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.14 1.15 7.64 -52.49 -0.40 0.75 16 39 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 41 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -35.56 377.15 -10.01 -45.56 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.65 Total: 1.05 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -1.62 Total: -26.35 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.71 Total: -39.63 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -2.38 Total: -43.43 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 43.02 SS G_CDS: -0.59 Total: 42.44 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.56 -10.01 -45.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173986098.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.169 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds