Wall clock time and date at job start Wed Apr 1 2020 04:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 116.99646 * 2 1 4 4 C 1.38756 * 120.05384 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.97296 * 180.02562 * 4 3 2 6 6 C 1.38271 * 120.06841 * 359.97438 * 5 4 3 7 7 C 1.38361 * 120.09357 * 359.72493 * 6 5 4 8 8 Cl 1.73601 * 119.98364 * 180.27315 * 7 6 5 9 9 C 1.38285 * 120.03259 * 0.55341 * 7 6 5 10 10 C 1.50695 * 120.03430 * 179.72119 * 9 7 6 11 11 N 1.46501 * 109.47096 * 269.72298 * 10 9 7 12 12 S 1.65608 * 120.00079 * 164.99965 * 11 10 9 13 13 O 1.42095 * 104.27841 * 181.07390 * 12 11 10 14 14 O 1.42102 * 104.27658 * 308.93104 * 12 11 10 15 15 C 1.81406 * 104.44741 * 65.00031 * 12 11 10 16 16 C 1.52991 * 109.46937 * 179.97438 * 15 12 11 17 17 C 1.52998 * 109.47008 * 180.02562 * 16 15 12 18 18 C 1.50706 * 109.47352 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99613 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00409 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99811 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00336 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47090 * 89.99611 * 22 20 18 24 24 H 1.48493 * 109.47239 * 209.99789 * 22 20 18 25 25 H 1.48505 * 109.46977 * 329.99638 * 22 20 18 26 26 H 1.08998 * 109.47433 * 59.99539 * 1 2 3 27 27 H 1.08997 * 109.47306 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47339 * 299.99664 * 1 2 3 29 29 H 1.07999 * 120.01350 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.96746 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.95221 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47187 * 149.72780 * 10 9 7 33 33 H 1.09001 * 109.47274 * 29.72325 * 10 9 7 34 34 H 0.97002 * 120.00027 * 345.00475 * 11 10 9 35 35 H 1.09000 * 109.47167 * 300.00580 * 15 12 11 36 36 H 1.09000 * 109.46895 * 59.99901 * 15 12 11 37 37 H 1.09008 * 109.47545 * 300.00011 * 16 15 12 38 38 H 1.09000 * 109.47377 * 60.00235 * 16 15 12 39 39 H 1.09004 * 109.46841 * 299.99680 * 17 16 15 40 40 H 1.08996 * 109.47424 * 60.00171 * 17 16 15 41 41 H 0.96999 * 120.00173 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9200 3.6052 -0.0011 6 6 3.3008 3.6773 -0.0005 7 6 4.0561 2.5180 0.0063 8 17 5.7895 2.6120 0.0141 9 6 3.4308 1.2846 0.0010 10 6 4.2534 0.0220 0.0021 11 7 4.5205 -0.3880 -1.3788 12 16 5.6953 -1.5112 -1.6966 13 8 5.6873 -1.6358 -3.1120 14 8 6.8405 -1.0242 -1.0105 15 6 5.0877 -3.0338 -0.9200 16 6 6.0977 -4.1603 -1.1472 17 6 5.5849 -5.4446 -0.4928 18 6 6.5801 -6.5542 -0.7160 19 1 7.4873 -6.3624 -1.2697 20 6 6.3318 -7.8142 -0.2144 21 7 5.2268 -8.0478 0.4594 22 14 7.5650 -9.1896 -0.4916 23 1 8.5443 -9.2089 0.6245 24 1 6.8514 -10.4906 -0.5466 25 1 8.2798 -8.9626 -1.7734 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.2126 2.3199 -0.0005 30 1 1.3325 4.5114 -0.0011 31 1 3.7904 4.6399 -0.0005 32 1 3.7059 -0.7680 0.5161 33 1 5.1973 0.2037 0.5162 34 1 4.0093 -0.0015 -2.1070 35 1 4.9600 -2.8700 0.1500 36 1 4.1303 -3.3100 -1.3620 37 1 6.2249 -4.3240 -2.2174 38 1 7.0552 -3.8843 -0.7055 39 1 5.4575 -5.2813 0.5774 40 1 4.6275 -5.7205 -0.9348 41 1 5.0523 -8.9341 0.8127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190257177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:38 Heat of formation + Delta-G solvation = -104.298096 kcal Electronic energy + Delta-G solvation = -25670.017456 eV Core-core repulsion = 21703.009053 eV Total energy + Delta-G solvation = -3967.008404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.77376 -38.16449 -36.81403 -36.53406 -35.72362 -35.47701 -34.62019 -32.15036 -31.39863 -30.45024 -27.80046 -27.75572 -25.97329 -23.68057 -22.64519 -22.05400 -20.62197 -19.14725 -18.62068 -17.50962 -17.03380 -16.75389 -16.44260 -16.12109 -15.77086 -15.63153 -15.36796 -14.91356 -14.57466 -14.45071 -14.08256 -13.85647 -13.47809 -13.29667 -12.63105 -12.54584 -12.26720 -12.20404 -12.15603 -11.93382 -11.85267 -11.72948 -11.68793 -11.52787 -11.26659 -11.18315 -10.93554 -10.89602 -10.80936 -10.38924 -9.90777 -9.63983 -9.27834 -9.21006 -9.02983 -8.69022 -8.38143 -6.03215 -4.05956 0.44251 0.71103 0.87873 1.75512 2.88288 2.90060 3.24120 3.32341 3.38257 3.42631 4.01531 4.14232 4.38396 4.44740 4.48222 4.53071 4.62438 4.76374 4.82251 4.88664 5.00709 5.14418 5.19981 5.25955 5.29018 5.33509 5.52180 5.65036 5.79283 5.84588 5.85765 5.96360 6.07153 6.32166 6.50577 6.86598 6.91436 6.98355 7.60552 7.70903 7.95229 8.36002 9.00348 9.58550 11.08068 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015702 B = 0.002596 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.840510 B =10785.090644 C =11902.590161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.304 6.304 3 C 0.158 3.842 4 C -0.209 4.209 5 C -0.062 4.062 6 C -0.152 4.152 7 C 0.016 3.984 8 Cl -0.043 7.043 9 C -0.124 4.124 10 C 0.162 3.838 11 N -1.116 6.116 12 S 2.599 3.401 13 O -0.964 6.964 14 O -0.958 6.958 15 C -0.609 4.609 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.057 0.943 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.414 0.586 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.021 0.979 40 H 0.020 0.980 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.351 25.977 0.851 28.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.216 6.216 3 C 0.110 3.890 4 C -0.228 4.228 5 C -0.080 4.080 6 C -0.171 4.171 7 C -0.012 4.012 8 Cl -0.014 7.014 9 C -0.127 4.127 10 C 0.036 3.964 11 N -0.874 5.874 12 S 2.695 3.305 13 O -0.954 6.954 14 O -0.948 6.948 15 C -0.740 4.740 16 C -0.145 4.145 17 C -0.008 4.008 18 C -0.563 4.563 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.076 0.924 27 H 0.124 0.876 28 H 0.076 0.924 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.248 0.752 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.292 25.744 0.610 28.118 hybrid contribution -0.434 -0.761 0.035 0.877 sum -11.726 24.983 0.645 27.606 Atomic orbital electron populations 1.23165 0.77713 1.04709 1.01387 1.86155 1.21763 1.25849 1.87851 1.18641 0.90934 0.84891 0.94485 1.21342 1.00573 0.92096 1.08782 1.20922 0.93721 0.97471 0.95921 1.20985 0.93761 0.97412 1.04928 1.20672 0.85946 0.93635 1.00945 1.98431 1.08153 1.98383 1.96396 1.18901 0.90874 0.94438 1.08529 1.20034 0.99581 0.93443 0.83367 1.55681 1.58673 1.59650 1.13356 1.05343 0.74150 0.76203 0.74795 1.93573 1.86283 1.86719 1.28836 1.93571 1.47115 1.78025 1.76055 1.30541 1.11764 1.18122 1.13612 1.21497 0.95718 0.95227 1.02086 1.19061 0.96646 0.89206 0.95846 1.21268 1.05647 0.94602 1.34828 0.92376 1.25017 0.95493 0.98786 0.95104 1.69959 1.24836 1.22111 1.36585 0.86558 0.81218 0.81318 0.78732 1.20570 1.21202 1.19749 0.92401 0.87594 0.92421 0.84655 0.84702 0.84570 0.89955 0.88861 0.75214 0.85489 0.85271 0.91640 0.91560 0.96107 0.96125 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.30 -2.73 9.54 -19.42 -0.19 -2.92 16 3 C 0.16 1.42 6.66 -39.22 -0.26 1.16 16 4 C -0.21 -1.43 9.04 -39.43 -0.36 -1.79 16 5 C -0.06 -0.39 10.04 -39.61 -0.40 -0.78 16 6 C -0.15 -1.16 9.83 -39.52 -0.39 -1.55 16 7 C 0.02 0.16 6.31 -39.52 -0.25 -0.09 16 8 Cl -0.04 -0.48 27.29 -51.86 -1.42 -1.89 16 9 C -0.12 -1.28 5.29 -104.44 -0.55 -1.83 16 10 C 0.16 1.83 5.64 -5.20 -0.03 1.81 16 11 N -1.12 -13.54 5.88 -11.66 -0.07 -13.60 16 12 S 2.60 40.34 5.46 -107.50 -0.59 39.76 16 13 O -0.96 -17.70 18.08 -57.54 -1.04 -18.74 16 14 O -0.96 -17.33 17.50 -57.54 -1.01 -18.33 16 15 C -0.61 -9.74 6.07 37.15 0.23 -9.51 16 16 C -0.11 -2.20 5.16 -26.74 -0.14 -2.34 16 17 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 18 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 19 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 22 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 26 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 27 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.14 0.61 6.30 -52.49 -0.33 0.28 16 30 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.08 0.85 7.53 -51.93 -0.39 0.46 16 33 H 0.09 1.11 6.44 -51.93 -0.33 0.78 16 34 H 0.41 4.43 8.61 -34.48 -0.30 4.14 16 35 H 0.13 1.81 8.14 -51.92 -0.42 1.38 16 36 H 0.13 1.87 8.14 -51.92 -0.42 1.45 16 37 H 0.06 1.34 8.14 -51.92 -0.42 0.91 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -36.07 374.65 -10.14 -46.22 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.49 Total: 0.03 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -1.71 Total: -26.88 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.67 Total: -39.64 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -2.23 Total: -39.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 40.34 SS G_CDS: -0.59 Total: 39.76 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.42 Total: -1.89 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.07 -10.14 -46.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190257177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.082 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds