Wall clock time and date at job start Wed Apr 1 2020 04:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99898 * 2 1 4 4 C 1.52999 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47338 * 185.00320 * 4 3 2 6 6 N 1.46503 * 109.47166 * 65.00302 * 4 3 2 7 7 S 1.65598 * 120.00316 * 94.99934 * 6 4 3 8 8 O 1.42093 * 104.27746 * 181.07181 * 7 6 4 9 9 O 1.42098 * 104.27312 * 308.92934 * 7 6 4 10 10 C 1.81397 * 104.44709 * 64.99940 * 7 6 4 11 11 C 1.53007 * 109.46849 * 180.02562 * 10 7 6 12 12 C 1.50705 * 109.46897 * 180.02562 * 11 10 7 13 13 H 1.08001 * 120.00109 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99659 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00116 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00194 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47601 * 90.00124 * 16 14 12 18 18 H 1.48507 * 109.47077 * 210.00166 * 16 14 12 19 19 H 1.48500 * 109.47358 * 329.99799 * 16 14 12 20 20 C 1.50696 * 109.47379 * 305.00280 * 4 3 2 21 21 C 1.38247 * 119.98658 * 260.00298 * 20 4 3 22 22 C 1.38216 * 120.01497 * 179.97438 * 21 20 4 23 23 C 1.38357 * 119.98603 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.01134 * 180.02562 * 23 22 21 25 25 C 1.38347 * 119.97107 * 0.28224 * 23 22 21 26 26 C 1.38219 * 119.98930 * 359.40143 * 25 23 22 27 27 H 1.08999 * 109.46774 * 299.99824 * 1 2 3 28 28 H 1.09002 * 109.46800 * 60.00143 * 1 2 3 29 29 H 1.09002 * 109.46967 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47327 * 60.00403 * 3 2 1 31 31 H 1.09003 * 109.47337 * 299.99650 * 3 2 1 32 32 H 0.97005 * 119.99423 * 274.99737 * 6 4 3 33 33 H 1.09006 * 109.47617 * 300.00035 * 10 7 6 34 34 H 1.08999 * 109.47474 * 60.00089 * 10 7 6 35 35 H 1.09000 * 109.46824 * 299.99296 * 11 10 7 36 36 H 1.08994 * 109.47056 * 60.00312 * 11 10 7 37 37 H 0.96995 * 120.00430 * 180.02562 * 15 14 12 38 38 H 1.08003 * 119.99321 * 359.97438 * 21 20 4 39 39 H 1.08002 * 120.00776 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.00661 * 179.71600 * 25 23 22 41 41 H 1.07997 * 119.99445 * 180.32231 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1764 0.0903 6 7 3.9767 0.5640 -1.2509 7 16 4.4474 1.5121 -2.5244 8 8 4.7756 0.5843 -3.5494 9 8 3.3800 2.4359 -2.6867 10 6 5.9378 2.3591 -1.9314 11 6 6.4745 3.2771 -3.0315 12 6 7.7131 3.9804 -2.5391 13 1 8.0804 3.7918 -1.5411 14 6 8.3772 4.8645 -3.3626 15 7 9.4578 5.4787 -2.9327 16 14 7.7423 5.1900 -5.0889 17 1 6.7843 6.3243 -5.0584 18 1 8.8814 5.5281 -5.9797 19 1 7.0566 3.9765 -5.6012 20 6 3.9714 0.3327 1.1648 21 6 4.4458 0.9293 2.3181 22 6 4.8454 0.1485 3.3864 23 6 4.7709 -1.2304 3.3011 24 17 5.2719 -2.2116 4.6426 25 6 4.3021 -1.8270 2.1442 26 6 3.8966 -1.0450 1.0791 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.9931 -0.4024 -1.3336 33 1 5.6922 2.9530 -1.0509 34 1 6.6963 1.6208 -1.6716 35 1 6.7201 2.6836 -3.9122 36 1 5.7159 4.0155 -3.2908 37 1 9.9249 6.1009 -3.5119 38 1 4.5043 2.0057 2.3844 39 1 5.2156 0.6148 4.2875 40 1 4.2480 -2.9034 2.0754 41 1 3.5257 -1.5105 0.1779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192929241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:55 Heat of formation + Delta-G solvation = -103.875080 kcal Electronic energy + Delta-G solvation = -26191.530227 eV Core-core repulsion = 22224.540167 eV Total energy + Delta-G solvation = -3966.990060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.02397 -38.10872 -36.79503 -36.72917 -35.65988 -35.36901 -33.98967 -31.53050 -31.42987 -30.86765 -28.76720 -26.37140 -26.01778 -23.69061 -23.13116 -21.33807 -21.17850 -19.11353 -18.05039 -17.52171 -16.95559 -16.65555 -16.30551 -15.93202 -15.63830 -15.46150 -15.40438 -14.98687 -14.49794 -14.30672 -13.77340 -13.73106 -13.67596 -13.21430 -12.96691 -12.83768 -12.65969 -12.18119 -11.93651 -11.78520 -11.75441 -11.70052 -11.62432 -11.45652 -11.33817 -11.24781 -11.19668 -11.03323 -10.48440 -10.20847 -9.92082 -9.83141 -9.55111 -9.26489 -9.24531 -8.82095 -8.68663 -6.18825 -4.20400 0.56956 0.87829 1.08028 1.89690 2.89074 3.24464 3.32247 3.36133 3.38337 3.57427 4.04543 4.31179 4.33595 4.42584 4.56548 4.66021 4.81697 4.85809 5.01610 5.09880 5.12894 5.15092 5.22488 5.22672 5.39607 5.44039 5.45951 5.47736 5.56802 5.66750 5.76100 5.96291 5.99965 6.22888 6.30628 6.53566 6.77618 6.88098 6.94010 6.97534 7.51884 8.33849 8.82199 9.40684 10.93485 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.003186 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.719398 B = 8786.402844 C =10493.777363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.045 3.955 4 C 0.199 3.801 5 H 0.111 0.889 6 N -1.114 6.114 7 S 2.587 3.413 8 O -0.963 6.963 9 O -0.965 6.965 10 C -0.584 4.584 11 C -0.007 4.007 12 C -0.520 4.520 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.869 3.131 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.262 1.262 20 C -0.080 4.080 21 C -0.098 4.098 22 C -0.110 4.110 23 C -0.034 4.034 24 Cl -0.076 7.076 25 C -0.112 4.112 26 C -0.073 4.073 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.416 0.584 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.267 0.733 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.578 -13.110 13.182 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.034 4.034 4 C 0.091 3.909 5 H 0.128 0.872 6 N -0.871 5.871 7 S 2.685 3.315 8 O -0.953 6.953 9 O -0.955 6.955 10 C -0.717 4.717 11 C -0.046 4.046 12 C -0.559 4.559 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.533 5.533 16 Si 0.695 3.305 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.186 1.186 20 C -0.082 4.082 21 C -0.117 4.117 22 C -0.129 4.129 23 C -0.060 4.060 24 Cl -0.048 7.048 25 C -0.131 4.131 26 C -0.091 4.091 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.252 0.748 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.767 -13.006 12.409 23.911 hybrid contribution 0.129 0.103 -0.164 0.233 sum -15.638 -12.903 12.245 23.685 Atomic orbital electron populations 1.22723 0.81214 1.02554 1.00000 1.87846 1.19419 1.27307 1.95472 1.23140 0.92667 0.85561 1.01993 1.19721 0.92927 0.96070 0.82172 0.87167 1.55861 1.82701 1.20166 1.28348 1.05730 0.77494 0.74681 0.73626 1.93569 1.85848 1.61702 1.54218 1.93546 1.52181 1.65027 1.84716 1.30320 1.17734 1.12288 1.11327 1.19411 0.98570 0.94244 0.92374 1.20839 1.08110 1.24538 1.02391 0.90379 1.24984 0.94567 0.95163 0.98371 1.69878 1.18122 1.28219 1.37059 0.86932 0.79120 0.79662 0.84777 1.19672 1.20749 1.18614 1.19896 0.98919 0.94400 0.94970 1.21035 0.97991 1.00431 0.92216 1.21002 1.00672 0.91460 0.99787 1.20971 1.03083 0.91847 0.90130 1.98370 1.89888 1.70694 1.45803 1.21041 0.99534 1.00633 0.91913 1.20884 0.97033 0.92831 0.98379 0.94244 0.93964 0.89802 0.92193 0.90594 0.74834 0.85819 0.85288 0.94919 0.95342 0.92356 0.84592 0.84815 0.84976 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -3.92 9.08 -35.23 -0.32 -4.24 16 3 C 0.04 0.46 5.76 37.16 0.21 0.67 16 4 C 0.20 2.06 2.71 -69.08 -0.19 1.87 16 5 H 0.11 0.99 7.01 -51.93 -0.36 0.62 16 6 N -1.11 -13.20 5.26 -5.88 -0.03 -13.23 16 7 S 2.59 41.35 5.38 -107.50 -0.58 40.77 16 8 O -0.96 -18.37 18.08 -57.54 -1.04 -19.41 16 9 O -0.96 -17.37 17.05 -57.54 -0.98 -18.35 16 10 C -0.58 -10.09 5.90 37.16 0.22 -9.87 16 11 C -0.01 -0.15 4.05 -27.88 -0.11 -0.27 16 12 C -0.52 -14.18 9.66 -34.44 -0.33 -14.52 16 13 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 16 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 20 C -0.08 -0.78 4.83 -104.62 -0.51 -1.29 16 21 C -0.10 -0.88 9.67 -39.59 -0.38 -1.26 16 22 C -0.11 -1.01 9.83 -39.55 -0.39 -1.40 16 23 C -0.03 -0.33 6.32 -39.50 -0.25 -0.57 16 24 Cl -0.08 -0.71 28.96 -51.86 -1.50 -2.21 16 25 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 26 C -0.07 -0.69 8.15 -39.59 -0.32 -1.02 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.87 7.37 -51.93 -0.38 0.49 16 32 H 0.42 4.36 7.04 -34.47 -0.24 4.12 16 33 H 0.12 1.85 7.44 -51.92 -0.39 1.47 16 34 H 0.13 2.07 8.14 -51.92 -0.42 1.65 16 35 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 36 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.14 0.96 8.04 -52.48 -0.42 0.54 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 1.19 6.57 -52.49 -0.34 0.85 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -34.40 370.54 -9.64 -44.04 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.45 Total: 2.26 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -1.42 Total: -25.78 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.74 Total: -39.14 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -2.34 Total: -42.00 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 16 Polarization: 41.35 SS G_CDS: -0.58 Total: 40.77 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.40 -9.64 -44.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192929241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.838 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds