Wall clock time and date at job start Wed Apr 1 2020 04:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99898 * 2 1 4 4 C 1.52999 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47338 * 185.00320 * 4 3 2 6 6 N 1.46503 * 109.47166 * 65.00302 * 4 3 2 7 7 S 1.65598 * 120.00316 * 94.99934 * 6 4 3 8 8 O 1.42093 * 104.27746 * 181.07181 * 7 6 4 9 9 O 1.42098 * 104.27312 * 308.92934 * 7 6 4 10 10 C 1.81397 * 104.44709 * 64.99940 * 7 6 4 11 11 C 1.53007 * 109.46849 * 180.02562 * 10 7 6 12 12 C 1.50705 * 109.46897 * 180.02562 * 11 10 7 13 13 H 1.08001 * 120.00109 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99659 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00116 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00194 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47601 * 90.00124 * 16 14 12 18 18 H 1.48507 * 109.47077 * 210.00166 * 16 14 12 19 19 H 1.48500 * 109.47358 * 329.99799 * 16 14 12 20 20 C 1.50696 * 109.47379 * 305.00280 * 4 3 2 21 21 C 1.38247 * 119.98658 * 260.00298 * 20 4 3 22 22 C 1.38216 * 120.01497 * 179.97438 * 21 20 4 23 23 C 1.38357 * 119.98603 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.01134 * 180.02562 * 23 22 21 25 25 C 1.38347 * 119.97107 * 0.28224 * 23 22 21 26 26 C 1.38219 * 119.98930 * 359.40143 * 25 23 22 27 27 H 1.08999 * 109.46774 * 299.99824 * 1 2 3 28 28 H 1.09002 * 109.46800 * 60.00143 * 1 2 3 29 29 H 1.09002 * 109.46967 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47327 * 60.00403 * 3 2 1 31 31 H 1.09003 * 109.47337 * 299.99650 * 3 2 1 32 32 H 0.97005 * 119.99423 * 274.99737 * 6 4 3 33 33 H 1.09006 * 109.47617 * 300.00035 * 10 7 6 34 34 H 1.08999 * 109.47474 * 60.00089 * 10 7 6 35 35 H 1.09000 * 109.46824 * 299.99296 * 11 10 7 36 36 H 1.08994 * 109.47056 * 60.00312 * 11 10 7 37 37 H 0.96995 * 120.00430 * 180.02562 * 15 14 12 38 38 H 1.08003 * 119.99321 * 359.97438 * 21 20 4 39 39 H 1.08002 * 120.00776 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.00661 * 179.71600 * 25 23 22 41 41 H 1.07997 * 119.99445 * 180.32231 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1764 0.0903 6 7 3.9767 0.5640 -1.2509 7 16 4.4474 1.5121 -2.5244 8 8 4.7756 0.5843 -3.5494 9 8 3.3800 2.4359 -2.6867 10 6 5.9378 2.3591 -1.9314 11 6 6.4745 3.2771 -3.0315 12 6 7.7131 3.9804 -2.5391 13 1 8.0804 3.7918 -1.5411 14 6 8.3772 4.8645 -3.3626 15 7 9.4578 5.4787 -2.9327 16 14 7.7423 5.1900 -5.0889 17 1 6.7843 6.3243 -5.0584 18 1 8.8814 5.5281 -5.9797 19 1 7.0566 3.9765 -5.6012 20 6 3.9714 0.3327 1.1648 21 6 4.4458 0.9293 2.3181 22 6 4.8454 0.1485 3.3864 23 6 4.7709 -1.2304 3.3011 24 17 5.2719 -2.2116 4.6426 25 6 4.3021 -1.8270 2.1442 26 6 3.8966 -1.0450 1.0791 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.9931 -0.4024 -1.3336 33 1 5.6922 2.9530 -1.0509 34 1 6.6963 1.6208 -1.6716 35 1 6.7201 2.6836 -3.9122 36 1 5.7159 4.0155 -3.2908 37 1 9.9249 6.1009 -3.5119 38 1 4.5043 2.0057 2.3844 39 1 5.2156 0.6148 4.2875 40 1 4.2480 -2.9034 2.0754 41 1 3.5257 -1.5105 0.1779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192929241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:55 Heat of formation + Delta-G solvation = -128.141702 kcal Electronic energy + Delta-G solvation = -26192.582507 eV Core-core repulsion = 22224.540167 eV Total energy + Delta-G solvation = -3968.042340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.74951 -38.84599 -38.13694 -37.47296 -37.02935 -36.24238 -35.87161 -33.45246 -32.15995 -31.66283 -29.50871 -27.87407 -27.02677 -24.44312 -23.86194 -23.12281 -21.95767 -20.32230 -19.40767 -18.84987 -18.19365 -17.50316 -17.13287 -17.09480 -16.67569 -16.41192 -16.34160 -16.17033 -15.96658 -15.38700 -15.07817 -14.79660 -14.45144 -14.36592 -14.02376 -13.79346 -13.75853 -13.41425 -13.24797 -13.15058 -13.04829 -13.01383 -12.92516 -12.43713 -12.41486 -12.24679 -12.22481 -12.00938 -11.93225 -11.72215 -11.68566 -11.30232 -10.82013 -10.58225 -10.46469 -9.93588 -9.54480 -8.34165 -6.39599 -0.72875 0.14726 0.39530 1.18993 1.33581 1.36157 1.45617 1.75901 2.31467 2.64466 2.77325 2.88915 3.00128 3.23771 3.52524 3.81574 3.88919 3.99557 4.03127 4.06952 4.19742 4.32471 4.44096 4.49240 4.59142 4.59618 4.61408 4.68879 4.80155 4.83404 4.91528 5.06607 5.10081 5.14917 5.26194 5.31167 5.49880 5.58754 5.85202 6.04390 6.19296 6.25860 6.66971 7.24848 8.81263 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.003186 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.719398 B = 8786.402844 C =10493.777363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.043 3.957 4 C 0.191 3.809 5 H 0.126 0.874 6 N -1.099 6.099 7 S 2.620 3.380 8 O -0.993 6.993 9 O -0.982 6.982 10 C -0.590 4.590 11 C -0.017 4.017 12 C -0.525 4.525 13 H 0.051 0.949 14 C 0.013 3.987 15 N -0.940 5.940 16 Si 0.923 3.077 17 H -0.259 1.259 18 H -0.277 1.277 19 H -0.250 1.250 20 C -0.085 4.085 21 C -0.100 4.100 22 C -0.117 4.117 23 C -0.044 4.044 24 Cl -0.077 7.077 25 C -0.118 4.118 26 C -0.079 4.079 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.425 0.575 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.029 0.971 36 H 0.035 0.965 37 H 0.269 0.731 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.128 -13.613 13.467 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C -0.035 4.035 4 C 0.084 3.916 5 H 0.143 0.857 6 N -0.860 5.860 7 S 2.716 3.284 8 O -0.984 6.984 9 O -0.972 6.972 10 C -0.721 4.721 11 C -0.056 4.056 12 C -0.564 4.564 13 H 0.069 0.931 14 C -0.185 4.185 15 N -0.580 5.580 16 Si 0.746 3.254 17 H -0.184 1.184 18 H -0.202 1.202 19 H -0.173 1.173 20 C -0.087 4.087 21 C -0.119 4.119 22 C -0.135 4.135 23 C -0.071 4.071 24 Cl -0.048 7.048 25 C -0.137 4.137 26 C -0.098 4.098 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.262 0.738 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.173 0.827 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.321 -13.516 12.698 25.376 hybrid contribution 0.579 0.192 -0.108 0.620 sum -16.742 -13.324 12.589 24.826 Atomic orbital electron populations 1.22876 0.80163 1.03563 1.00443 1.87826 1.20624 1.27349 1.95565 1.23142 0.92369 0.85727 1.02273 1.19999 0.93432 0.96847 0.81362 0.85678 1.55459 1.81979 1.20256 1.28257 1.04561 0.76393 0.74009 0.73441 1.93524 1.86144 1.62489 1.56220 1.93525 1.52393 1.65990 1.85265 1.30316 1.19112 1.12218 1.10487 1.19374 0.97069 0.95122 0.94082 1.21177 1.09483 1.24375 1.01319 0.93087 1.25859 0.94834 0.95261 1.02562 1.70008 1.19753 1.29499 1.38767 0.86049 0.79010 0.80287 0.80029 1.18375 1.20233 1.17331 1.19871 0.99458 0.94387 0.94980 1.21278 0.97332 1.01520 0.91772 1.21220 1.00507 0.91377 1.00407 1.21144 1.03374 0.92263 0.90314 1.98369 1.89905 1.70748 1.45815 1.21200 0.99357 1.01333 0.91766 1.20994 0.97140 0.92978 0.98664 0.93092 0.94220 0.88608 0.90116 0.92101 0.73788 0.83598 0.84275 0.95235 0.94709 0.92198 0.82670 0.83566 0.83890 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.39 -7.33 9.08 -148.98 -1.35 -8.69 16 3 C 0.04 0.79 5.76 71.98 0.41 1.20 16 4 C 0.19 3.51 2.71 44.24 0.12 3.63 16 5 H 0.13 1.90 7.01 -2.39 -0.02 1.89 16 6 N -1.10 -23.92 5.26 -172.52 -0.91 -24.83 16 7 S 2.62 79.39 5.38 -56.49 -0.30 79.09 16 8 O -0.99 -36.61 18.08 -127.65 -2.31 -38.92 16 9 O -0.98 -33.64 17.05 -127.65 -2.18 -35.82 16 10 C -0.59 -19.51 5.90 71.98 0.42 -19.09 16 11 C -0.02 -0.78 4.05 29.85 0.12 -0.66 16 12 C -0.52 -28.76 9.66 25.60 0.25 -28.51 16 13 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 14 C 0.01 0.76 5.47 84.65 0.46 1.22 16 15 N -0.94 -56.99 13.96 21.45 0.30 -56.69 16 16 Si 0.92 43.00 27.47 68.60 1.88 44.89 16 17 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 19 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 20 C -0.09 -1.48 4.83 -19.86 -0.10 -1.57 16 21 C -0.10 -1.57 9.67 22.27 0.22 -1.36 16 22 C -0.12 -1.90 9.83 22.29 0.22 -1.68 16 23 C -0.04 -0.79 6.32 22.32 0.14 -0.65 16 24 Cl -0.08 -1.34 28.96 -2.72 -0.08 -1.42 16 25 C -0.12 -2.01 9.83 22.29 0.22 -1.79 16 26 C -0.08 -1.37 8.15 22.27 0.18 -1.19 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.30 7.37 -2.39 -0.02 1.28 16 32 H 0.42 8.12 7.04 -96.74 -0.68 7.44 16 33 H 0.15 4.08 7.44 -2.39 -0.02 4.07 16 34 H 0.14 4.28 8.14 -2.39 -0.02 4.26 16 35 H 0.03 1.33 7.20 -2.39 -0.02 1.32 16 36 H 0.03 1.51 7.57 -2.39 -0.02 1.49 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.16 1.74 8.04 -2.91 -0.02 1.72 16 39 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.14 2.22 6.57 -2.91 -0.02 2.20 16 Total: -1.00 -73.28 370.54 -0.71 -73.99 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.32 Total: 17.22 kcal Atomic # 6 Polarization: -52.75 SS G_CDS: 3.92 Total: -48.83 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -0.61 Total: -81.51 kcal Atomic # 8 Polarization: -77.58 SS G_CDS: -5.84 Total: -83.42 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.89 kcal Atomic # 16 Polarization: 79.39 SS G_CDS: -0.30 Total: 79.09 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -73.28 -0.71 -73.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192929241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.154 kcal (2) G-P(sol) polarization free energy of solvation -73.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds