Wall clock time and date at job start Wed Apr 1 2020 04:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47231 * 2 1 4 4 C 1.46494 * 119.99856 * 278.32332 * 3 2 1 5 5 C 1.50701 * 109.47236 * 269.99955 * 4 3 2 6 6 H 1.08001 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99943 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00251 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99867 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46818 * 90.00260 * 9 7 5 11 11 H 1.48501 * 109.47262 * 210.00367 * 9 7 5 12 12 H 1.48499 * 109.47155 * 330.00813 * 9 7 5 13 13 C 1.34772 * 119.99751 * 98.32238 * 3 2 1 14 14 O 1.21551 * 119.99769 * 186.35516 * 13 3 2 15 15 C 1.47850 * 120.00153 * 6.35642 * 13 3 2 16 16 C 1.39580 * 120.14271 * 150.53809 * 15 13 3 17 17 C 1.37954 * 119.85509 * 180.02562 * 16 15 13 18 18 C 1.38368 * 120.14315 * 0.02570 * 17 16 15 19 19 S 1.76199 * 119.85378 * 179.97438 * 18 17 16 20 20 O 1.42100 * 104.27307 * 206.06652 * 19 18 17 21 21 O 1.42097 * 104.27560 * 333.92606 * 19 18 17 22 22 C 1.81402 * 104.45079 * 89.99815 * 19 18 17 23 23 F 1.39903 * 109.46903 * 300.00331 * 22 19 18 24 24 F 1.39909 * 109.47046 * 59.99866 * 22 19 18 25 25 C 1.38360 * 120.28856 * 0.22931 * 18 17 16 26 26 C 1.37958 * 120.14665 * 359.48813 * 25 18 17 27 27 H 1.09000 * 109.47465 * 59.99655 * 1 2 3 28 28 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46766 * 299.99846 * 1 2 3 30 30 H 1.09000 * 109.47117 * 239.99606 * 2 1 3 31 31 H 1.09006 * 109.47071 * 120.00250 * 2 1 3 32 32 H 1.08999 * 109.47153 * 30.00321 * 4 3 2 33 33 H 1.08996 * 109.47071 * 150.00176 * 4 3 2 34 34 H 0.96997 * 120.00355 * 179.97438 * 8 7 5 35 35 H 1.07999 * 120.07131 * 0.02562 * 16 15 13 36 36 H 1.07994 * 119.93119 * 180.02562 * 17 16 15 37 37 H 1.08992 * 109.46714 * 179.97438 * 22 19 18 38 38 H 1.08003 * 119.92400 * 179.74925 * 25 18 17 39 39 H 1.08008 * 120.07501 * 180.24879 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0894 2.1330 -1.2553 5 6 3.4392 1.9222 -1.8915 6 1 4.1711 1.2916 -1.4087 7 6 3.7397 2.5343 -3.0898 8 7 2.8486 3.3026 -3.6775 9 14 5.4130 2.2735 -3.8780 10 1 5.3574 1.0944 -4.7790 11 1 5.7841 3.4788 -4.6622 12 1 6.4278 2.0400 -2.8193 13 6 2.4023 1.9602 1.1549 14 8 2.6973 3.1392 1.1750 15 6 2.4645 1.1613 2.3974 16 6 3.3791 1.4924 3.3985 17 6 3.4325 0.7426 4.5552 18 6 2.5823 -0.3360 4.7240 19 16 2.6575 -1.2889 6.2042 20 8 2.1766 -2.5699 5.8210 21 8 3.9900 -1.1144 6.6659 22 6 1.4841 -0.4777 7.3249 23 9 1.8807 0.8473 7.5358 24 9 0.2062 -0.4969 6.7556 25 6 1.6771 -0.6727 3.7333 26 6 1.6095 0.0725 2.5742 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.3100 1.7838 -1.9326 33 1 1.9453 3.1941 -1.0520 34 1 3.0602 3.7335 -4.5203 35 1 4.0435 2.3338 3.2678 36 1 4.1393 0.9979 5.3308 37 1 1.4654 -1.0078 8.2770 38 1 1.0190 -1.5182 3.8695 39 1 0.8996 -0.1890 1.8033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267430251.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:33 Heat of formation + Delta-G solvation = -124.495489 kcal Electronic energy + Delta-G solvation = -28461.642578 eV Core-core repulsion = 23941.961670 eV Total energy + Delta-G solvation = -4519.680908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -49.76296 -47.92138 -40.39212 -38.15309 -37.89044 -36.76322 -35.80814 -33.11754 -31.63904 -31.37555 -30.22319 -28.13470 -27.40049 -24.59771 -23.49151 -22.82405 -22.32741 -20.20104 -19.34385 -18.90957 -18.71986 -18.19454 -17.54554 -17.07113 -16.50312 -16.38258 -15.76623 -15.28866 -14.98843 -14.88975 -14.73815 -14.71568 -14.28240 -14.17289 -13.91958 -13.81076 -13.36535 -13.23352 -12.95838 -12.87223 -12.83495 -12.62848 -12.40821 -12.13905 -11.79885 -11.45233 -11.30144 -11.26695 -11.07887 -10.98902 -10.76621 -10.60796 -10.21390 -9.75810 -9.52762 -9.24677 -9.05716 -8.50597 -7.83860 -6.11896 -4.17491 -1.10167 0.31117 1.10060 1.85016 2.66162 3.01804 3.05978 3.22457 3.26119 3.33087 3.36664 3.51960 3.57415 3.81995 3.90370 4.38149 4.50571 4.62251 4.70524 5.01160 5.12433 5.21678 5.22844 5.41082 5.43353 5.59208 5.67278 5.78335 5.81408 5.91418 6.11321 6.16911 6.39263 6.54551 6.93511 7.31854 7.38923 7.83611 8.13016 8.19661 8.72190 8.89973 9.48002 10.96201 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.002735 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.929538 B =10234.408632 C =10532.607104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.070 3.930 3 N -0.581 5.581 4 C 0.245 3.755 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.538 3.462 14 O -0.528 6.528 15 C -0.048 4.048 16 C -0.089 4.089 17 C -0.020 4.020 18 C -0.651 4.651 19 S 2.477 3.523 20 O -0.889 6.889 21 O -0.889 6.889 22 C -0.210 4.210 23 F -0.163 7.163 24 F -0.163 7.163 25 C -0.023 4.023 26 C -0.145 4.145 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.036 0.964 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 -11.709 21.411 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.054 4.054 3 N -0.311 5.311 4 C 0.126 3.874 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.324 3.676 14 O -0.406 6.406 15 C -0.052 4.052 16 C -0.108 4.108 17 C -0.040 4.040 18 C -0.742 4.742 19 S 2.649 3.351 20 O -0.887 6.887 21 O -0.886 6.886 22 C -0.345 4.345 23 F -0.144 7.144 24 F -0.145 7.145 25 C -0.042 4.042 26 C -0.164 4.164 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.751 -11.612 21.437 24.839 hybrid contribution 0.303 0.685 -0.692 1.020 sum -4.448 -10.927 20.745 23.865 Atomic orbital electron populations 1.22307 0.96261 1.02147 1.03010 1.22332 0.93976 0.84690 1.04382 1.48192 1.60874 1.13357 1.08726 1.19372 0.97319 0.92743 0.77956 1.21415 0.99719 1.30082 1.05859 0.92358 1.24929 0.97387 0.94759 0.96897 1.69923 1.34466 1.30912 1.17829 0.86475 0.83914 0.77677 0.79245 1.20561 1.21013 1.19844 1.18147 0.79228 0.87135 0.83129 1.90779 1.49060 1.15345 1.85415 1.20800 0.94888 0.94329 0.95178 1.21412 0.97963 0.99495 0.91981 1.20888 0.94638 0.90708 0.97728 1.29931 1.09962 1.15064 1.19242 1.06911 0.75920 0.76005 0.76308 1.93659 1.81284 1.33763 1.79949 1.93663 1.28386 1.85783 1.80807 1.33071 0.94905 0.90640 1.15891 1.93110 1.89989 1.34924 1.96399 1.93105 1.39185 1.96543 1.85636 1.20917 0.94087 0.97567 0.91612 1.22677 1.00818 0.94440 0.98454 0.91050 0.91406 0.92344 0.89748 0.88827 0.94562 0.93460 0.92591 0.83547 0.83427 0.82929 0.83445 0.80906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.13 37.16 0.34 -1.88 16 2 C 0.07 1.06 5.58 -4.04 -0.02 1.04 16 3 N -0.58 -11.89 2.46 -176.18 -0.43 -12.33 16 4 C 0.24 6.19 5.22 -5.20 -0.03 6.17 16 5 C -0.53 -14.73 9.39 -34.44 -0.32 -15.06 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 9 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.54 11.09 7.46 -12.33 -0.09 11.00 16 14 O -0.53 -13.03 16.25 5.32 0.09 -12.94 16 15 C -0.05 -0.77 5.59 -104.97 -0.59 -1.36 16 16 C -0.09 -1.26 9.60 -39.19 -0.38 -1.64 16 17 C -0.02 -0.23 9.45 -39.64 -0.37 -0.61 16 18 C -0.65 -6.85 5.65 -39.49 -0.22 -7.07 16 19 S 2.48 19.92 5.39 -107.50 -0.58 19.34 16 20 O -0.89 -8.64 17.10 -57.54 -0.98 -9.63 16 21 O -0.89 -8.94 17.11 -57.54 -0.98 -9.93 16 22 C -0.21 -1.32 5.94 101.05 0.60 -0.72 16 23 F -0.16 -1.36 17.37 2.25 0.04 -1.32 16 24 F -0.16 -1.32 17.37 2.25 0.04 -1.28 16 25 C -0.02 -0.24 9.45 -39.64 -0.37 -0.62 16 26 C -0.15 -1.83 7.49 -39.19 -0.29 -2.13 16 27 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.68 7.07 -51.92 -0.37 0.32 16 30 H 0.08 1.34 8.13 -51.93 -0.42 0.91 16 31 H 0.09 1.22 4.02 -52.11 -0.21 1.01 16 32 H 0.04 0.92 7.87 -51.93 -0.41 0.51 16 33 H 0.05 1.36 7.34 -51.93 -0.38 0.97 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.15 2.07 7.92 -52.49 -0.42 1.66 16 36 H 0.15 1.33 7.56 -52.49 -0.40 0.93 16 37 H 0.15 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.15 1.15 7.55 -52.48 -0.40 0.76 16 39 H 0.17 1.94 2.52 -52.48 -0.13 1.81 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -36.08 352.94 -7.57 -43.65 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -3.93 Total: -0.90 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.85 Total: -11.21 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.30 Total: -37.59 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -1.88 Total: -32.49 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.08 Total: -2.60 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 19.92 SS G_CDS: -0.58 Total: 19.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.08 -7.57 -43.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267430251.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.844 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds