Wall clock time and date at job start Wed Apr 1 2020 04:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47231 * 2 1 4 4 C 1.46494 * 119.99856 * 278.32332 * 3 2 1 5 5 C 1.50701 * 109.47236 * 269.99955 * 4 3 2 6 6 H 1.08001 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99943 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00251 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99867 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46818 * 90.00260 * 9 7 5 11 11 H 1.48501 * 109.47262 * 210.00367 * 9 7 5 12 12 H 1.48499 * 109.47155 * 330.00813 * 9 7 5 13 13 C 1.34772 * 119.99751 * 98.32238 * 3 2 1 14 14 O 1.21551 * 119.99769 * 186.35516 * 13 3 2 15 15 C 1.47850 * 120.00153 * 6.35642 * 13 3 2 16 16 C 1.39580 * 120.14271 * 150.53809 * 15 13 3 17 17 C 1.37954 * 119.85509 * 180.02562 * 16 15 13 18 18 C 1.38368 * 120.14315 * 0.02570 * 17 16 15 19 19 S 1.76199 * 119.85378 * 179.97438 * 18 17 16 20 20 O 1.42100 * 104.27307 * 206.06652 * 19 18 17 21 21 O 1.42097 * 104.27560 * 333.92606 * 19 18 17 22 22 C 1.81402 * 104.45079 * 89.99815 * 19 18 17 23 23 F 1.39903 * 109.46903 * 300.00331 * 22 19 18 24 24 F 1.39909 * 109.47046 * 59.99866 * 22 19 18 25 25 C 1.38360 * 120.28856 * 0.22931 * 18 17 16 26 26 C 1.37958 * 120.14665 * 359.48813 * 25 18 17 27 27 H 1.09000 * 109.47465 * 59.99655 * 1 2 3 28 28 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46766 * 299.99846 * 1 2 3 30 30 H 1.09000 * 109.47117 * 239.99606 * 2 1 3 31 31 H 1.09006 * 109.47071 * 120.00250 * 2 1 3 32 32 H 1.08999 * 109.47153 * 30.00321 * 4 3 2 33 33 H 1.08996 * 109.47071 * 150.00176 * 4 3 2 34 34 H 0.96997 * 120.00355 * 179.97438 * 8 7 5 35 35 H 1.07999 * 120.07131 * 0.02562 * 16 15 13 36 36 H 1.07994 * 119.93119 * 180.02562 * 17 16 15 37 37 H 1.08992 * 109.46714 * 179.97438 * 22 19 18 38 38 H 1.08003 * 119.92400 * 179.74925 * 25 18 17 39 39 H 1.08008 * 120.07501 * 180.24879 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0894 2.1330 -1.2553 5 6 3.4392 1.9222 -1.8915 6 1 4.1711 1.2916 -1.4087 7 6 3.7397 2.5343 -3.0898 8 7 2.8486 3.3026 -3.6775 9 14 5.4130 2.2735 -3.8780 10 1 5.3574 1.0944 -4.7790 11 1 5.7841 3.4788 -4.6622 12 1 6.4278 2.0400 -2.8193 13 6 2.4023 1.9602 1.1549 14 8 2.6973 3.1392 1.1750 15 6 2.4645 1.1613 2.3974 16 6 3.3791 1.4924 3.3985 17 6 3.4325 0.7426 4.5552 18 6 2.5823 -0.3360 4.7240 19 16 2.6575 -1.2889 6.2042 20 8 2.1766 -2.5699 5.8210 21 8 3.9900 -1.1144 6.6659 22 6 1.4841 -0.4777 7.3249 23 9 1.8807 0.8473 7.5358 24 9 0.2062 -0.4969 6.7556 25 6 1.6771 -0.6727 3.7333 26 6 1.6095 0.0725 2.5742 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.3100 1.7838 -1.9326 33 1 1.9453 3.1941 -1.0520 34 1 3.0602 3.7335 -4.5203 35 1 4.0435 2.3338 3.2678 36 1 4.1393 0.9979 5.3308 37 1 1.4654 -1.0078 8.2770 38 1 1.0190 -1.5182 3.8695 39 1 0.8996 -0.1890 1.8033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267430251.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:32 Heat of formation + Delta-G solvation = -150.520981 kcal Electronic energy + Delta-G solvation = -28462.771128 eV Core-core repulsion = 23941.961670 eV Total energy + Delta-G solvation = -4520.809458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.33419 -48.50305 -41.70167 -39.44725 -38.60207 -37.47998 -37.38359 -35.10342 -32.96356 -32.47199 -31.46794 -29.28904 -28.66099 -26.06740 -24.86128 -23.94249 -23.75423 -20.89036 -20.71874 -19.66102 -19.29937 -18.77491 -18.72137 -18.39347 -18.21926 -17.56605 -16.88777 -16.45590 -16.34224 -16.27343 -15.64150 -15.59146 -15.30255 -15.23867 -15.01832 -14.75474 -14.51105 -14.29482 -13.97910 -13.89151 -13.81821 -13.62625 -13.57319 -13.41947 -13.33476 -13.12559 -12.74019 -12.56872 -12.36714 -12.25323 -12.22208 -11.91609 -11.77881 -11.65843 -10.92741 -10.68229 -10.50112 -10.10465 -9.58463 -8.27319 -6.42610 -1.75762 -0.71275 0.13127 1.14411 1.34596 1.37417 1.47316 1.56187 2.04922 2.22694 2.36981 2.40184 2.55803 2.84545 3.02658 3.09863 3.26212 3.35913 3.64888 3.73658 3.97260 4.14272 4.19084 4.26533 4.41885 4.51772 4.74362 4.77923 4.80228 4.87922 4.92002 4.98685 5.11887 5.19116 5.35417 5.48181 5.57743 5.74915 5.99235 6.55227 6.66280 7.13150 7.30858 8.80134 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.002735 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.929538 B =10234.408632 C =10532.607104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.061 3.939 3 N -0.587 5.587 4 C 0.261 3.739 5 C -0.550 4.550 6 H 0.053 0.947 7 C 0.011 3.989 8 N -0.925 5.925 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.274 1.274 13 C 0.530 3.470 14 O -0.587 6.587 15 C -0.077 4.077 16 C -0.104 4.104 17 C -0.018 4.018 18 C -0.655 4.655 19 S 2.507 3.493 20 O -0.901 6.901 21 O -0.908 6.908 22 C -0.199 4.199 23 F -0.173 7.173 24 F -0.170 7.170 25 C -0.016 4.016 26 C -0.142 4.142 27 H 0.049 0.951 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.030 0.970 33 H 0.001 0.999 34 H 0.269 0.731 35 H 0.133 0.867 36 H 0.171 0.829 37 H 0.210 0.790 38 H 0.184 0.816 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.605 -14.817 23.878 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.060 4.060 3 N -0.316 5.316 4 C 0.140 3.860 5 C -0.588 4.588 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.565 5.565 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.199 1.199 13 C 0.319 3.681 14 O -0.469 6.469 15 C -0.080 4.080 16 C -0.124 4.124 17 C -0.037 4.037 18 C -0.743 4.743 19 S 2.678 3.322 20 O -0.898 6.898 21 O -0.906 6.906 22 C -0.337 4.337 23 F -0.154 7.154 24 F -0.151 7.151 25 C -0.035 4.035 26 C -0.160 4.160 27 H 0.068 0.932 28 H 0.129 0.871 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.140 0.860 32 H 0.048 0.952 33 H 0.019 0.981 34 H 0.078 0.922 35 H 0.151 0.849 36 H 0.189 0.811 37 H 0.227 0.773 38 H 0.202 0.798 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.071 -14.765 23.861 28.514 hybrid contribution 0.341 1.600 -1.288 2.082 sum -4.730 -13.165 22.573 26.556 Atomic orbital electron populations 1.22275 0.93697 1.04710 1.02361 1.22737 0.96082 0.81758 1.05432 1.48184 1.61072 1.15106 1.07232 1.18806 0.96353 0.90890 0.79954 1.21685 1.00521 1.30240 1.06348 0.92910 1.25842 1.01355 0.94256 0.97423 1.70039 1.36498 1.31623 1.18310 0.85402 0.78818 0.78233 0.78289 1.18683 1.20484 1.19865 1.18934 0.77697 0.86928 0.84543 1.90721 1.51591 1.18014 1.86601 1.20421 0.97994 0.96028 0.93555 1.21424 0.98035 1.00012 0.92959 1.21106 0.95136 0.90498 0.96946 1.30571 1.08544 1.14152 1.21018 1.06229 0.75622 0.75077 0.75247 1.93646 1.81569 1.34346 1.80274 1.93646 1.30331 1.85912 1.80674 1.33038 0.93251 0.90171 1.17216 1.93104 1.90043 1.35897 1.96395 1.93103 1.39568 1.96527 1.85926 1.21348 0.94066 0.97737 0.90347 1.22761 1.00110 0.93368 0.99779 0.93230 0.87107 0.91525 0.90521 0.85981 0.95179 0.98105 0.92245 0.84941 0.81130 0.77347 0.79845 0.79612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 9.13 71.98 0.66 -3.41 16 2 C 0.06 1.86 5.58 86.38 0.48 2.34 16 3 N -0.59 -25.34 2.46 -829.58 -2.04 -27.38 16 4 C 0.26 14.13 5.22 85.63 0.45 14.58 16 5 C -0.55 -31.83 9.39 25.60 0.24 -31.59 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.62 5.46 84.66 0.46 1.08 16 8 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 9 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 C 0.53 23.32 7.46 86.79 0.65 23.97 16 14 O -0.59 -31.56 16.25 -3.87 -0.06 -31.62 16 15 C -0.08 -2.50 5.59 -20.09 -0.11 -2.61 16 16 C -0.10 -3.06 9.60 22.53 0.22 -2.85 16 17 C -0.02 -0.39 9.45 22.23 0.21 -0.18 16 18 C -0.66 -12.00 5.65 22.33 0.13 -11.87 16 19 S 2.51 31.00 5.39 -56.49 -0.30 30.70 16 20 O -0.90 -13.85 17.10 -127.65 -2.18 -16.03 16 21 O -0.91 -15.42 17.11 -127.65 -2.18 -17.61 16 22 C -0.20 -1.60 5.94 113.37 0.67 -0.92 16 23 F -0.17 -2.27 17.37 44.97 0.78 -1.49 16 24 F -0.17 -2.01 17.37 44.97 0.78 -1.23 16 25 C -0.02 -0.30 9.45 22.23 0.21 -0.09 16 26 C -0.14 -3.36 7.49 22.52 0.17 -3.19 16 27 H 0.05 1.39 7.94 -2.39 -0.02 1.37 16 28 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.47 7.07 -2.38 -0.02 1.45 16 30 H 0.08 2.44 8.13 -2.39 -0.02 2.42 16 31 H 0.12 3.03 4.02 -2.55 -0.01 3.02 16 32 H 0.03 1.64 7.87 -2.39 -0.02 1.62 16 33 H 0.00 0.05 7.34 -2.39 -0.02 0.03 16 34 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.13 4.11 7.92 -2.91 -0.02 4.09 16 36 H 0.17 2.79 7.56 -2.91 -0.02 2.77 16 37 H 0.21 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.18 1.98 7.55 -2.91 -0.02 1.96 16 39 H 0.19 3.77 2.52 -2.91 -0.01 3.76 16 Total: -1.00 -84.11 352.94 2.64 -81.47 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.11 Total: 6.53 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 4.43 Total: -14.75 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.76 Total: -82.89 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: -4.43 Total: -65.26 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 1.56 Total: -2.72 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 31.00 SS G_CDS: -0.30 Total: 30.70 kcal Total: -84.11 2.64 -81.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267430251.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.050 kcal (2) G-P(sol) polarization free energy of solvation -84.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds