Wall clock time and date at job start Wed Apr 1 2020 04:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99372 * 2 1 4 4 S 1.65594 * 120.00533 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.40177 * 336.46124 * 4 2 1 6 6 O 1.42105 * 106.40357 * 203.54025 * 4 2 1 7 7 N 1.65599 * 107.21812 * 90.00100 * 4 2 1 8 8 C 1.36940 * 119.99932 * 269.99967 * 7 4 2 9 9 H 1.08000 * 119.99888 * 326.97408 * 8 7 4 10 10 C 1.38806 * 120.00041 * 146.97698 * 8 7 4 11 11 N 1.31627 * 119.99891 * 335.73452 * 10 8 7 12 12 Si 1.86795 * 120.00392 * 155.73461 * 10 8 7 13 13 H 1.48504 * 109.47034 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47376 * 119.99690 * 12 10 8 15 15 H 1.48498 * 109.47589 * 240.00085 * 12 10 8 16 16 C 1.46496 * 120.00060 * 90.00231 * 7 4 2 17 17 C 1.50697 * 109.47570 * 95.78608 * 16 7 4 18 18 O 1.21280 * 119.99399 * 359.97438 * 17 16 7 19 19 N 1.34780 * 120.00418 * 179.97438 * 17 16 7 20 20 C 1.46491 * 119.99838 * 180.02562 * 19 17 16 21 21 C 1.50709 * 109.46883 * 180.02562 * 20 19 17 22 22 C 1.33387 * 125.20167 * 89.99659 * 21 20 19 23 23 C 1.38422 * 114.91791 * 180.02562 * 22 21 20 24 24 C 1.33387 * 114.92305 * 0.25199 * 23 22 21 25 25 S 1.75884 * 109.59336 * 359.63241 * 24 23 22 26 26 H 1.09007 * 109.46428 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47280 * 300.00017 * 1 2 3 28 28 H 1.08999 * 109.47452 * 60.00264 * 1 2 3 29 29 H 1.09006 * 109.47093 * 269.99772 * 3 2 1 30 30 H 1.09004 * 109.47454 * 30.00096 * 3 2 1 31 31 H 1.09004 * 109.47049 * 149.99999 * 3 2 1 32 32 H 0.97001 * 119.99887 * 179.97438 * 11 10 8 33 33 H 1.09002 * 109.47140 * 335.78467 * 16 7 4 34 34 H 1.09004 * 109.47468 * 215.78883 * 16 7 4 35 35 H 0.97002 * 119.99461 * 0.02562 * 19 17 16 36 36 H 1.08993 * 109.47718 * 60.00429 * 20 19 17 37 37 H 1.09002 * 109.47300 * 299.99609 * 20 19 17 38 38 H 1.07997 * 122.54651 * 0.06156 * 22 21 20 39 39 H 1.08000 * 122.54285 * 179.97438 * 23 22 21 40 40 H 1.08001 * 125.20926 * 179.75376 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2931 -1.4340 0.0006 5 8 1.4115 -2.4062 0.5455 6 8 3.5761 -1.1563 0.5450 7 7 2.5383 -1.8592 -1.5809 8 6 1.6126 -2.6281 -2.2346 9 1 1.0511 -3.3746 -1.6926 10 6 1.3962 -2.4481 -3.5938 11 7 1.6803 -1.2933 -4.1582 12 14 0.7018 -3.8444 -4.6221 13 1 0.4688 -5.0283 -3.7564 14 1 -0.5828 -3.4180 -5.2329 15 1 1.6668 -4.1970 -5.6944 16 6 3.7454 -1.4129 -2.2808 17 6 4.7909 -2.4965 -2.2203 18 8 4.5513 -3.5389 -1.6485 19 7 5.9920 -2.3074 -2.8017 20 6 7.0080 -3.3611 -2.7433 21 6 8.2499 -2.9018 -3.4632 22 6 9.2666 -2.2466 -2.9010 23 6 10.3018 -1.9265 -3.7624 24 6 10.1234 -2.3172 -5.0252 25 16 8.5798 -3.1472 -5.1733 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 2.3791 1.5835 -1.0277 30 1 1.6082 2.0285 0.5139 31 1 3.1498 1.1386 0.5139 32 1 1.5293 -1.1677 -5.1081 33 1 4.1291 -0.5108 -1.8042 34 1 3.5037 -1.1989 -3.3219 35 1 6.1836 -1.4735 -3.2587 36 1 6.6241 -4.2630 -3.2199 37 1 7.2502 -3.5751 -1.7023 38 1 9.2814 -1.9860 -1.8530 39 1 11.1850 -1.3964 -3.4376 40 1 10.8210 -2.1512 -5.8328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283556357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:03 Heat of formation + Delta-G solvation = -56.822788 kcal Electronic energy + Delta-G solvation = -26890.350969 eV Core-core repulsion = 22959.737707 eV Total energy + Delta-G solvation = -3930.613262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.08831 -37.89720 -36.04072 -35.45406 -35.16132 -34.55555 -34.22716 -31.54638 -30.48078 -27.61917 -27.35616 -25.68378 -24.05260 -23.61559 -22.82586 -20.08046 -19.38413 -18.49861 -17.81646 -17.35494 -16.67812 -16.42969 -15.96957 -15.67302 -15.17590 -15.03005 -14.66969 -14.62643 -13.87723 -13.80985 -13.23692 -13.15130 -13.04417 -12.96879 -12.74439 -12.21971 -12.19389 -11.97267 -11.95159 -11.74549 -11.61073 -11.47087 -11.06623 -10.98633 -10.84301 -10.79123 -10.63073 -10.58563 -10.50622 -10.22939 -9.48710 -9.20331 -8.79458 -8.65418 -8.57359 -8.24687 -7.83619 -6.49355 -4.06213 0.79507 1.49390 1.80194 1.88302 2.56716 3.13640 3.23396 3.33945 3.48045 3.79528 4.00011 4.26363 4.62783 4.75543 4.81141 4.90572 5.22034 5.41590 5.49651 5.57121 5.57614 5.66762 5.93001 5.93725 5.96676 6.01014 6.01451 6.13339 6.16199 6.24678 6.34285 6.43474 6.63580 6.72536 6.85617 7.10051 7.38231 7.51955 8.03204 8.34905 8.79208 8.97477 9.23463 10.50087 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.003763 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.373739 B = 7438.601303 C = 8816.174705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -1.020 6.020 3 C 0.092 3.908 4 S 2.697 3.303 5 O -0.993 6.993 6 O -1.016 7.016 7 N -0.811 5.811 8 C -0.256 4.256 9 H 0.104 0.896 10 C 0.036 3.964 11 N -0.850 5.850 12 Si 0.916 3.084 13 H -0.263 1.263 14 H -0.280 1.280 15 H -0.279 1.279 16 C 0.108 3.892 17 C 0.504 3.496 18 O -0.524 6.524 19 N -0.739 5.739 20 C 0.193 3.807 21 C -0.191 4.191 22 C -0.123 4.123 23 C -0.137 4.137 24 C -0.216 4.216 25 S 0.113 5.887 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.270 0.730 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.398 0.602 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.293 4.472 -3.893 12.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.855 5.855 3 C -0.054 4.054 4 S 2.718 3.282 5 O -0.977 6.977 6 O -1.000 7.000 7 N -0.639 5.639 8 C -0.397 4.397 9 H 0.122 0.878 10 C -0.173 4.173 11 N -0.490 5.490 12 Si 0.742 3.258 13 H -0.187 1.187 14 H -0.206 1.206 15 H -0.205 1.205 16 C -0.024 4.024 17 C 0.289 3.711 18 O -0.398 6.398 19 N -0.395 5.395 20 C 0.067 3.933 21 C -0.308 4.308 22 C -0.154 4.154 23 C -0.167 4.167 24 C -0.352 4.352 25 S 0.377 5.623 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.232 0.768 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 10.578 2.715 -3.815 11.568 hybrid contribution 0.587 0.888 -0.092 1.069 sum 11.166 3.603 -3.907 12.366 Atomic orbital electron populations 1.21283 0.80233 1.03127 0.99928 1.58609 1.14475 1.22329 1.90120 1.21320 0.96613 0.86479 1.01024 1.06807 0.72387 0.72893 0.76079 1.93417 1.66672 1.59056 1.78549 1.93396 1.41794 1.85478 1.79331 1.53084 1.22321 1.57624 1.30869 1.19520 1.16907 1.10894 0.92387 0.87803 1.25491 0.96714 0.96568 0.98522 1.69907 1.45120 1.21247 1.12733 0.86021 0.78338 0.81827 0.79620 1.18724 1.20621 1.20497 1.21121 0.83548 0.92858 1.04864 1.21940 0.81887 0.90272 0.76962 1.90635 1.78769 1.28291 1.42142 1.46163 1.14230 1.19284 1.59856 1.19554 0.83120 0.91138 0.99498 1.24624 1.01351 1.07766 0.97087 1.20242 0.93283 1.00219 1.01663 1.20177 1.00605 1.03285 0.92675 1.25697 1.01369 1.06902 1.01186 1.84492 1.14486 1.56107 1.07222 0.90068 0.94160 0.93080 0.93451 0.92541 0.91156 0.91959 0.90221 0.84340 0.76805 0.90774 0.89886 0.83959 0.84296 0.81976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.83 10.67 59.85 0.64 2.47 16 2 N -1.02 -20.67 3.64 -129.20 -0.47 -21.14 16 3 C 0.09 1.54 10.70 59.85 0.64 2.18 16 4 S 2.70 65.56 6.02 -107.50 -0.65 64.91 16 5 O -0.99 -26.77 15.58 -57.17 -0.89 -27.67 16 6 O -1.02 -25.61 15.69 -57.17 -0.90 -26.50 16 7 N -0.81 -19.95 2.44 -61.09 -0.15 -20.10 16 8 C -0.26 -6.63 8.99 -15.06 -0.14 -6.77 16 9 H 0.10 2.82 7.40 -52.49 -0.39 2.43 16 10 C 0.04 0.88 4.98 -17.43 -0.09 0.79 16 11 N -0.85 -20.28 11.27 55.49 0.63 -19.66 16 12 Si 0.92 19.71 29.62 -169.99 -5.03 14.67 16 13 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 14 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 15 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 16 C 0.11 2.35 5.45 -5.20 -0.03 2.32 16 17 C 0.50 10.87 7.86 -10.99 -0.09 10.78 16 18 O -0.52 -13.37 16.31 5.56 0.09 -13.27 16 19 N -0.74 -12.24 5.55 -61.48 -0.34 -12.58 16 20 C 0.19 2.84 6.16 -5.19 -0.03 2.81 16 21 C -0.19 -2.31 5.88 -36.00 -0.21 -2.53 16 22 C -0.12 -1.32 10.05 -41.21 -0.41 -1.74 16 23 C -0.14 -1.28 10.18 -41.21 -0.42 -1.70 16 24 C -0.22 -1.98 11.23 29.04 0.33 -1.65 16 25 S 0.11 1.24 23.33 -107.50 -2.51 -1.27 16 26 H 0.08 1.59 6.91 -51.93 -0.36 1.23 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.07 1.18 7.02 -51.93 -0.36 0.82 16 32 H 0.27 6.07 8.31 -40.82 -0.34 5.73 16 33 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 34 H 0.14 3.05 5.30 -51.93 -0.28 2.78 16 35 H 0.40 5.54 8.46 -40.82 -0.35 5.20 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -32.55 366.88 -9.56 -42.11 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.06 Total: 8.00 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 0.19 Total: 6.97 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -0.34 Total: -73.48 kcal Atomic # 8 Polarization: -65.75 SS G_CDS: -1.70 Total: -67.44 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.67 kcal Atomic # 16 Polarization: 66.79 SS G_CDS: -3.15 Total: 63.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.55 -9.56 -42.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283556357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.709 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds