Wall clock time and date at job start Wed Apr 1 2020 04:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99372 * 2 1 4 4 S 1.65594 * 120.00533 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.40177 * 336.46124 * 4 2 1 6 6 O 1.42105 * 106.40357 * 203.54025 * 4 2 1 7 7 N 1.65599 * 107.21812 * 90.00100 * 4 2 1 8 8 C 1.36940 * 119.99932 * 269.99967 * 7 4 2 9 9 H 1.08000 * 119.99888 * 326.97408 * 8 7 4 10 10 C 1.38806 * 120.00041 * 146.97698 * 8 7 4 11 11 N 1.31627 * 119.99891 * 335.73452 * 10 8 7 12 12 Si 1.86795 * 120.00392 * 155.73461 * 10 8 7 13 13 H 1.48504 * 109.47034 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47376 * 119.99690 * 12 10 8 15 15 H 1.48498 * 109.47589 * 240.00085 * 12 10 8 16 16 C 1.46496 * 120.00060 * 90.00231 * 7 4 2 17 17 C 1.50697 * 109.47570 * 95.78608 * 16 7 4 18 18 O 1.21280 * 119.99399 * 359.97438 * 17 16 7 19 19 N 1.34780 * 120.00418 * 179.97438 * 17 16 7 20 20 C 1.46491 * 119.99838 * 180.02562 * 19 17 16 21 21 C 1.50709 * 109.46883 * 180.02562 * 20 19 17 22 22 C 1.33387 * 125.20167 * 89.99659 * 21 20 19 23 23 C 1.38422 * 114.91791 * 180.02562 * 22 21 20 24 24 C 1.33387 * 114.92305 * 0.25199 * 23 22 21 25 25 S 1.75884 * 109.59336 * 359.63241 * 24 23 22 26 26 H 1.09007 * 109.46428 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47280 * 300.00017 * 1 2 3 28 28 H 1.08999 * 109.47452 * 60.00264 * 1 2 3 29 29 H 1.09006 * 109.47093 * 269.99772 * 3 2 1 30 30 H 1.09004 * 109.47454 * 30.00096 * 3 2 1 31 31 H 1.09004 * 109.47049 * 149.99999 * 3 2 1 32 32 H 0.97001 * 119.99887 * 179.97438 * 11 10 8 33 33 H 1.09002 * 109.47140 * 335.78467 * 16 7 4 34 34 H 1.09004 * 109.47468 * 215.78883 * 16 7 4 35 35 H 0.97002 * 119.99461 * 0.02562 * 19 17 16 36 36 H 1.08993 * 109.47718 * 60.00429 * 20 19 17 37 37 H 1.09002 * 109.47300 * 299.99609 * 20 19 17 38 38 H 1.07997 * 122.54651 * 0.06156 * 22 21 20 39 39 H 1.08000 * 122.54285 * 179.97438 * 23 22 21 40 40 H 1.08001 * 125.20926 * 179.75376 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2931 -1.4340 0.0006 5 8 1.4115 -2.4062 0.5455 6 8 3.5761 -1.1563 0.5450 7 7 2.5383 -1.8592 -1.5809 8 6 1.6126 -2.6281 -2.2346 9 1 1.0511 -3.3746 -1.6926 10 6 1.3962 -2.4481 -3.5938 11 7 1.6803 -1.2933 -4.1582 12 14 0.7018 -3.8444 -4.6221 13 1 0.4688 -5.0283 -3.7564 14 1 -0.5828 -3.4180 -5.2329 15 1 1.6668 -4.1970 -5.6944 16 6 3.7454 -1.4129 -2.2808 17 6 4.7909 -2.4965 -2.2203 18 8 4.5513 -3.5389 -1.6485 19 7 5.9920 -2.3074 -2.8017 20 6 7.0080 -3.3611 -2.7433 21 6 8.2499 -2.9018 -3.4632 22 6 9.2666 -2.2466 -2.9010 23 6 10.3018 -1.9265 -3.7624 24 6 10.1234 -2.3172 -5.0252 25 16 8.5798 -3.1472 -5.1733 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 2.3791 1.5835 -1.0277 30 1 1.6082 2.0285 0.5139 31 1 3.1498 1.1386 0.5139 32 1 1.5293 -1.1677 -5.1081 33 1 4.1291 -0.5108 -1.8042 34 1 3.5037 -1.1989 -3.3219 35 1 6.1836 -1.4735 -3.2587 36 1 6.6241 -4.2630 -3.2199 37 1 7.2502 -3.5751 -1.7023 38 1 9.2814 -1.9860 -1.8530 39 1 11.1850 -1.3964 -3.4376 40 1 10.8210 -2.1512 -5.8328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283556357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:02 Heat of formation + Delta-G solvation = -80.841484 kcal Electronic energy + Delta-G solvation = -26891.392498 eV Core-core repulsion = 22959.737707 eV Total energy + Delta-G solvation = -3931.654791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.68336 -38.84043 -38.04401 -37.19567 -36.75217 -36.54047 -35.70571 -33.39364 -31.65195 -29.13186 -28.77087 -26.95067 -25.71924 -25.16328 -23.82268 -21.69022 -20.35605 -20.21949 -19.31828 -19.00079 -18.26460 -18.12971 -17.52785 -17.00841 -16.74871 -16.40503 -16.26132 -16.05115 -15.46400 -15.32238 -14.92204 -14.70395 -14.47620 -13.91676 -13.80812 -13.68066 -13.58986 -13.39994 -13.36391 -13.20398 -13.17318 -13.03928 -12.83339 -12.73744 -12.63121 -12.43425 -12.33054 -12.27093 -12.02973 -11.66497 -11.28849 -10.91122 -10.10721 -9.85044 -9.77623 -9.57552 -9.42927 -8.33504 -5.98442 -0.08467 -0.00324 0.65223 1.08545 1.40707 1.47294 1.60275 1.75050 1.78746 2.19101 2.42652 2.50856 2.88935 2.98967 3.62154 3.68589 4.04514 4.14963 4.18836 4.24991 4.30041 4.55962 4.57767 4.64594 4.68099 4.74871 4.80047 4.90507 4.96674 5.00592 5.18582 5.19537 5.30715 5.34159 5.42979 5.55316 5.61900 5.91123 6.40559 6.62378 6.88949 7.32887 7.38996 8.66398 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.003763 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.373739 B = 7438.601303 C = 8816.174705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.023 6.023 3 C 0.085 3.915 4 S 2.715 3.285 5 O -1.027 7.027 6 O -1.029 7.029 7 N -0.824 5.824 8 C -0.290 4.290 9 H 0.076 0.924 10 C 0.017 3.983 11 N -0.857 5.857 12 Si 0.961 3.039 13 H -0.279 1.279 14 H -0.266 1.266 15 H -0.274 1.274 16 C 0.105 3.895 17 C 0.499 3.501 18 O -0.573 6.573 19 N -0.719 5.719 20 C 0.195 3.805 21 C -0.216 4.216 22 C -0.112 4.112 23 C -0.144 4.144 24 C -0.198 4.198 25 S 0.094 5.906 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.278 0.722 33 H 0.100 0.900 34 H 0.139 0.861 35 H 0.412 0.588 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.150 0.850 39 H 0.167 0.833 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.754 6.576 -4.979 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.861 5.861 3 C -0.060 4.060 4 S 2.736 3.264 5 O -1.011 7.011 6 O -1.013 7.013 7 N -0.653 5.653 8 C -0.430 4.430 9 H 0.093 0.907 10 C -0.191 4.191 11 N -0.496 5.496 12 Si 0.785 3.215 13 H -0.204 1.204 14 H -0.191 1.191 15 H -0.199 1.199 16 C -0.026 4.026 17 C 0.284 3.716 18 O -0.451 6.451 19 N -0.375 5.375 20 C 0.070 3.930 21 C -0.333 4.333 22 C -0.144 4.144 23 C -0.174 4.174 24 C -0.334 4.334 25 S 0.357 5.643 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.156 0.844 35 H 0.249 0.751 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.167 0.833 39 H 0.185 0.815 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 12.072 4.853 -4.970 13.928 hybrid contribution 0.243 0.357 0.298 0.524 sum 12.314 5.210 -4.672 14.164 Atomic orbital electron populations 1.21433 0.78774 1.02453 1.02252 1.58207 1.15503 1.22434 1.89976 1.21581 0.96765 0.85417 1.02232 1.05557 0.71956 0.73241 0.75671 1.93371 1.67556 1.60921 1.79273 1.93373 1.42466 1.85860 1.79591 1.52923 1.23163 1.58644 1.30558 1.19258 1.18268 1.12141 0.93318 0.90666 1.25877 0.96812 0.98014 0.98376 1.69901 1.44987 1.21437 1.13266 0.85373 0.78527 0.79335 0.78248 1.20402 1.19061 1.19908 1.21259 0.82956 0.93630 1.04761 1.21985 0.83139 0.89545 0.76882 1.90608 1.79972 1.29944 1.44608 1.45989 1.13139 1.20240 1.58096 1.19485 0.83749 0.90203 0.99535 1.24296 1.00931 1.10221 0.97859 1.20495 0.92997 0.98631 1.02304 1.20437 1.01049 1.03494 0.92382 1.26075 1.00286 1.04990 1.02020 1.84569 1.16313 1.56960 1.06415 0.92319 0.90755 0.91741 0.92492 0.88939 0.91467 0.91203 0.88221 0.84424 0.75130 0.92058 0.90560 0.83267 0.81538 0.79113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.37 10.67 127.77 1.36 4.73 16 2 N -1.02 -40.23 3.64 -562.66 -2.05 -42.28 16 3 C 0.09 2.63 10.70 127.77 1.37 4.00 16 4 S 2.72 133.75 6.02 -56.49 -0.34 133.41 16 5 O -1.03 -57.22 15.58 -128.00 -1.99 -59.22 16 6 O -1.03 -52.08 15.69 -128.00 -2.01 -54.09 16 7 N -0.82 -41.41 2.44 -347.19 -0.85 -42.26 16 8 C -0.29 -15.56 8.99 84.03 0.76 -14.80 16 9 H 0.08 4.35 7.40 -2.91 -0.02 4.33 16 10 C 0.02 0.85 4.98 84.86 0.42 1.27 16 11 N -0.86 -40.48 11.27 21.65 0.24 -40.24 16 12 Si 0.96 40.71 29.62 68.60 2.03 42.74 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 15 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 16 C 0.11 4.61 5.45 85.63 0.47 5.08 16 17 C 0.50 21.98 7.86 87.66 0.69 22.67 16 18 O -0.57 -30.42 16.31 -3.03 -0.05 -30.47 16 19 N -0.72 -23.95 5.55 -466.80 -2.59 -26.54 16 20 C 0.20 5.88 6.16 85.64 0.53 6.40 16 21 C -0.22 -5.07 5.88 24.59 0.14 -4.92 16 22 C -0.11 -2.20 10.05 21.22 0.21 -1.99 16 23 C -0.14 -2.23 10.18 21.22 0.22 -2.01 16 24 C -0.20 -3.01 11.23 66.72 0.75 -2.26 16 25 S 0.09 1.93 23.33 -56.49 -1.32 0.61 16 26 H 0.06 2.31 6.91 -2.38 -0.02 2.30 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.09 2.21 8.07 -2.38 -0.02 2.19 16 31 H 0.07 2.12 7.02 -2.38 -0.02 2.10 16 32 H 0.28 12.17 8.31 -92.71 -0.77 11.40 16 33 H 0.10 3.84 7.58 -2.39 -0.02 3.82 16 34 H 0.14 6.07 5.30 -2.38 -0.01 6.06 16 35 H 0.41 11.22 8.46 -92.71 -0.78 10.44 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.19 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -71.87 366.88 -1.71 -73.58 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.29 Total: 26.57 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 6.92 Total: 18.17 kcal Atomic # 7 Polarization: -146.08 SS G_CDS: -5.24 Total: -151.32 kcal Atomic # 8 Polarization: -139.72 SS G_CDS: -4.05 Total: -143.77 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 135.68 SS G_CDS: -1.66 Total: 134.02 kcal Total: -71.87 -1.71 -73.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283556357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.259 kcal (2) G-P(sol) polarization free energy of solvation -71.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds