Wall clock time and date at job start Wed Apr 1 2020 04:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00030 * 2 1 4 4 C 1.53001 * 109.47408 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46707 * 174.99629 * 4 3 2 6 6 N 1.46499 * 109.47277 * 295.00032 * 4 3 2 7 7 S 1.65597 * 119.99926 * 265.27680 * 6 4 3 8 8 O 1.42100 * 104.27735 * 180.79571 * 7 6 4 9 9 O 1.42101 * 104.27674 * 308.65500 * 7 6 4 10 10 C 1.81402 * 104.45066 * 64.71997 * 7 6 4 11 11 C 1.53002 * 109.47127 * 180.02562 * 10 7 6 12 12 C 1.50698 * 109.47312 * 180.02562 * 11 10 7 13 13 H 1.08006 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00306 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00075 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99901 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46735 * 90.00263 * 16 14 12 18 18 H 1.48496 * 109.47539 * 210.00051 * 16 14 12 19 19 H 1.48494 * 109.47283 * 330.00473 * 16 14 12 20 20 C 1.50701 * 109.46957 * 55.00101 * 4 3 2 21 21 C 1.38261 * 119.99176 * 279.72318 * 20 4 3 22 22 C 1.38218 * 120.02501 * 179.77062 * 21 20 4 23 23 C 1.38233 * 120.01625 * 0.50078 * 22 21 20 24 24 C 1.38337 * 119.98420 * 359.75412 * 23 22 21 25 25 Cl 1.73597 * 120.01414 * 180.02562 * 24 23 22 26 26 C 1.38191 * 119.99237 * 99.99658 * 20 4 3 27 27 H 1.09004 * 109.47004 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47123 * 299.99824 * 1 2 3 29 29 H 1.08997 * 109.47435 * 60.00507 * 1 2 3 30 30 H 1.09007 * 109.46920 * 59.99644 * 3 2 1 31 31 H 1.09000 * 109.46795 * 300.00102 * 3 2 1 32 32 H 0.97001 * 119.99790 * 84.99468 * 6 4 3 33 33 H 1.08990 * 109.47555 * 300.00369 * 10 7 6 34 34 H 1.09004 * 109.46533 * 60.00490 * 10 7 6 35 35 H 1.09004 * 109.47124 * 300.00530 * 11 10 7 36 36 H 1.08998 * 109.47317 * 60.00145 * 11 10 7 37 37 H 0.97006 * 119.99413 * 179.97438 * 15 14 12 38 38 H 1.08001 * 119.98578 * 0.02562 * 21 20 4 39 39 H 1.08001 * 119.99565 * 180.25712 * 22 21 20 40 40 H 1.07999 * 120.01051 * 179.72323 * 23 22 21 41 41 H 1.07994 * 120.01101 * 0.02562 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.9784 2.1767 -0.0890 6 7 3.9757 0.5645 1.2527 7 16 4.4388 1.5132 2.5286 8 8 4.8104 0.5853 3.5386 9 8 5.3903 2.4097 1.9714 10 6 2.9300 2.4011 3.0036 11 6 3.2317 3.3226 4.1871 12 6 1.9781 4.0598 4.5822 13 1 1.0582 3.8884 4.0428 14 6 2.0057 4.9537 5.6315 15 7 0.9117 5.5974 5.9760 16 14 3.5968 5.2505 6.5640 17 1 4.3461 6.3612 5.9234 18 1 3.2865 5.6097 7.9711 19 1 4.4230 4.0169 6.5387 20 6 3.9724 0.3325 -1.1629 21 6 3.9030 -1.0455 -1.0747 22 6 4.2991 -1.8277 -2.1432 23 6 4.7745 -1.2329 -3.2969 24 6 4.8491 0.1457 -3.3838 25 17 5.4454 0.8935 -4.8326 26 6 4.4475 0.9284 -2.3157 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9921 -0.4018 1.3358 33 1 2.5779 2.9960 2.1610 34 1 2.1606 1.6834 3.2885 35 1 3.5841 2.7280 5.0300 36 1 4.0010 4.0403 3.9020 37 1 0.9311 6.2260 6.7145 38 1 3.5354 -1.5108 -0.1721 39 1 4.2408 -2.9040 -2.0754 40 1 5.0882 -1.8443 -4.1301 41 1 4.5061 2.0047 -2.3827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288321489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:03 Heat of formation + Delta-G solvation = -103.226109 kcal Electronic energy + Delta-G solvation = -26302.466185 eV Core-core repulsion = 22335.504267 eV Total energy + Delta-G solvation = -3966.961919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.04647 -38.11252 -36.81249 -36.71672 -35.67515 -35.41850 -34.01897 -31.55725 -31.50877 -30.71118 -28.87465 -26.36632 -26.03765 -23.82164 -23.00116 -21.39535 -21.14533 -19.14921 -18.08558 -17.57992 -16.89100 -16.52582 -16.28055 -15.96449 -15.66147 -15.51529 -15.47882 -15.09733 -14.43833 -14.34085 -13.99086 -13.77480 -13.71470 -13.05623 -12.92035 -12.87742 -12.56265 -12.05320 -11.93122 -11.79218 -11.73381 -11.70981 -11.61963 -11.53777 -11.42181 -11.29133 -11.22528 -11.02160 -10.49435 -10.24473 -9.91609 -9.80882 -9.56876 -9.28376 -9.17739 -8.90587 -8.70072 -6.20653 -4.22234 0.55904 0.91925 0.99298 1.86957 2.89366 3.23998 3.31715 3.35576 3.35749 3.57913 4.04837 4.19526 4.32524 4.51437 4.53679 4.76210 4.78552 4.89232 4.99051 5.07161 5.11017 5.13056 5.22344 5.25814 5.31766 5.36398 5.42573 5.52311 5.56212 5.59646 5.73649 5.92282 6.07406 6.21792 6.27577 6.51176 6.75956 6.87219 6.93998 6.96989 7.50251 8.31656 8.79618 9.39095 10.91606 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.002866 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.320563 B = 9768.265921 C =10180.635555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.380 6.380 3 C 0.035 3.965 4 C 0.193 3.807 5 H 0.119 0.881 6 N -1.113 6.113 7 S 2.587 3.413 8 O -0.962 6.962 9 O -0.963 6.963 10 C -0.585 4.585 11 C -0.007 4.007 12 C -0.520 4.520 13 H 0.077 0.923 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.869 3.131 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.262 1.262 20 C -0.065 4.065 21 C -0.081 4.081 22 C -0.109 4.109 23 C -0.111 4.111 24 C -0.036 4.036 25 Cl -0.074 7.074 26 C -0.102 4.102 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.417 0.583 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.267 0.733 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 -14.016 -19.746 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.298 6.298 3 C -0.043 4.043 4 C 0.085 3.915 5 H 0.136 0.864 6 N -0.870 5.870 7 S 2.684 3.316 8 O -0.953 6.953 9 O -0.953 6.953 10 C -0.718 4.718 11 C -0.046 4.046 12 C -0.559 4.559 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.533 5.533 16 Si 0.695 3.305 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.186 1.186 20 C -0.067 4.067 21 C -0.100 4.100 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.062 4.062 25 Cl -0.045 7.045 26 C -0.121 4.121 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.252 0.748 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.041 -13.768 -19.404 24.133 hybrid contribution -0.250 0.285 0.286 0.475 sum 3.791 -13.483 -19.118 23.699 Atomic orbital electron populations 1.22769 0.80897 1.02725 1.00341 1.87855 1.19666 1.26838 1.95483 1.23311 0.92816 0.86048 1.02146 1.19798 0.92336 0.96988 0.82344 0.86355 1.55833 1.84874 1.20081 1.26187 1.05729 0.77926 0.74825 0.73129 1.93571 1.82401 1.61578 1.57705 1.93561 1.58099 1.66384 1.77281 1.30431 1.18774 1.12413 1.10205 1.19415 0.99844 0.94297 0.91051 1.20821 0.94913 1.23422 1.16711 0.90449 1.24980 0.96369 0.95107 0.96610 1.69881 1.27477 1.27141 1.28806 0.86930 0.84180 0.79672 0.79708 1.19638 1.20754 1.18592 1.19630 0.98642 0.94323 0.94130 1.21057 0.96968 0.92914 0.99014 1.21107 0.98737 1.00265 0.92661 1.21058 1.00328 0.92565 0.99044 1.20824 1.03132 0.93192 0.89088 1.98373 1.86817 1.82574 1.36737 1.20935 0.98891 1.00506 0.91783 0.89692 0.93532 0.94169 0.91149 0.91677 0.74822 0.85790 0.85282 0.94873 0.95305 0.92348 0.84874 0.85024 0.85128 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.87 9.11 -35.23 -0.32 -4.19 16 3 C 0.04 0.35 5.74 37.16 0.21 0.56 16 4 C 0.19 2.07 2.84 -69.08 -0.20 1.88 16 5 H 0.12 1.21 7.35 -51.93 -0.38 0.83 16 6 N -1.11 -13.43 5.26 -5.88 -0.03 -13.46 16 7 S 2.59 42.03 5.44 -107.50 -0.58 41.44 16 8 O -0.96 -18.45 18.08 -57.54 -1.04 -19.49 16 9 O -0.96 -18.04 17.40 -57.54 -1.00 -19.04 16 10 C -0.59 -10.06 5.01 37.16 0.19 -9.87 16 11 C -0.01 -0.15 4.05 -27.88 -0.11 -0.27 16 12 C -0.52 -14.04 9.66 -34.44 -0.33 -14.38 16 13 H 0.08 2.18 7.99 -52.48 -0.42 1.77 16 14 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -26.54 13.96 55.43 0.77 -25.76 16 16 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 20 C -0.07 -0.67 4.83 -104.63 -0.50 -1.17 16 21 C -0.08 -0.76 8.16 -39.58 -0.32 -1.08 16 22 C -0.11 -0.90 10.04 -39.59 -0.40 -1.30 16 23 C -0.11 -0.95 9.83 -39.55 -0.39 -1.34 16 24 C -0.04 -0.35 6.32 -39.49 -0.25 -0.60 16 25 Cl -0.07 -0.68 28.96 -51.86 -1.50 -2.19 16 26 C -0.10 -1.02 9.45 -39.55 -0.37 -1.39 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.72 5.68 -51.93 -0.30 0.43 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.42 4.39 7.03 -34.47 -0.24 4.14 16 33 H 0.12 1.85 6.87 -51.93 -0.36 1.50 16 34 H 0.13 2.02 8.14 -51.92 -0.42 1.60 16 35 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 36 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.13 1.15 6.57 -52.49 -0.35 0.80 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.14 1.19 8.04 -52.49 -0.42 0.77 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -34.32 368.27 -9.64 -43.96 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.35 Total: 2.38 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -1.47 Total: -25.65 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.74 Total: -39.22 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -2.36 Total: -42.71 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 42.03 SS G_CDS: -0.58 Total: 41.44 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.32 -9.64 -43.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288321489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.262 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds