Wall clock time and date at job start Wed Apr 1 2020 04:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00030 * 2 1 4 4 C 1.53001 * 109.47408 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46707 * 174.99629 * 4 3 2 6 6 N 1.46499 * 109.47277 * 295.00032 * 4 3 2 7 7 S 1.65597 * 119.99926 * 265.27680 * 6 4 3 8 8 O 1.42100 * 104.27735 * 180.79571 * 7 6 4 9 9 O 1.42101 * 104.27674 * 308.65500 * 7 6 4 10 10 C 1.81402 * 104.45066 * 64.71997 * 7 6 4 11 11 C 1.53002 * 109.47127 * 180.02562 * 10 7 6 12 12 C 1.50698 * 109.47312 * 180.02562 * 11 10 7 13 13 H 1.08006 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00306 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00075 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99901 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46735 * 90.00263 * 16 14 12 18 18 H 1.48496 * 109.47539 * 210.00051 * 16 14 12 19 19 H 1.48494 * 109.47283 * 330.00473 * 16 14 12 20 20 C 1.50701 * 109.46957 * 55.00101 * 4 3 2 21 21 C 1.38261 * 119.99176 * 279.72318 * 20 4 3 22 22 C 1.38218 * 120.02501 * 179.77062 * 21 20 4 23 23 C 1.38233 * 120.01625 * 0.50078 * 22 21 20 24 24 C 1.38337 * 119.98420 * 359.75412 * 23 22 21 25 25 Cl 1.73597 * 120.01414 * 180.02562 * 24 23 22 26 26 C 1.38191 * 119.99237 * 99.99658 * 20 4 3 27 27 H 1.09004 * 109.47004 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47123 * 299.99824 * 1 2 3 29 29 H 1.08997 * 109.47435 * 60.00507 * 1 2 3 30 30 H 1.09007 * 109.46920 * 59.99644 * 3 2 1 31 31 H 1.09000 * 109.46795 * 300.00102 * 3 2 1 32 32 H 0.97001 * 119.99790 * 84.99468 * 6 4 3 33 33 H 1.08990 * 109.47555 * 300.00369 * 10 7 6 34 34 H 1.09004 * 109.46533 * 60.00490 * 10 7 6 35 35 H 1.09004 * 109.47124 * 300.00530 * 11 10 7 36 36 H 1.08998 * 109.47317 * 60.00145 * 11 10 7 37 37 H 0.97006 * 119.99413 * 179.97438 * 15 14 12 38 38 H 1.08001 * 119.98578 * 0.02562 * 21 20 4 39 39 H 1.08001 * 119.99565 * 180.25712 * 22 21 20 40 40 H 1.07999 * 120.01051 * 179.72323 * 23 22 21 41 41 H 1.07994 * 120.01101 * 0.02562 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.9784 2.1767 -0.0890 6 7 3.9757 0.5645 1.2527 7 16 4.4388 1.5132 2.5286 8 8 4.8104 0.5853 3.5386 9 8 5.3903 2.4097 1.9714 10 6 2.9300 2.4011 3.0036 11 6 3.2317 3.3226 4.1871 12 6 1.9781 4.0598 4.5822 13 1 1.0582 3.8884 4.0428 14 6 2.0057 4.9537 5.6315 15 7 0.9117 5.5974 5.9760 16 14 3.5968 5.2505 6.5640 17 1 4.3461 6.3612 5.9234 18 1 3.2865 5.6097 7.9711 19 1 4.4230 4.0169 6.5387 20 6 3.9724 0.3325 -1.1629 21 6 3.9030 -1.0455 -1.0747 22 6 4.2991 -1.8277 -2.1432 23 6 4.7745 -1.2329 -3.2969 24 6 4.8491 0.1457 -3.3838 25 17 5.4454 0.8935 -4.8326 26 6 4.4475 0.9284 -2.3157 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9921 -0.4018 1.3358 33 1 2.5779 2.9960 2.1610 34 1 2.1606 1.6834 3.2885 35 1 3.5841 2.7280 5.0300 36 1 4.0010 4.0403 3.9020 37 1 0.9311 6.2260 6.7145 38 1 3.5354 -1.5108 -0.1721 39 1 4.2408 -2.9040 -2.0754 40 1 5.0882 -1.8443 -4.1301 41 1 4.5061 2.0047 -2.3827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288321489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:02 Heat of formation + Delta-G solvation = -127.488510 kcal Electronic energy + Delta-G solvation = -26303.518282 eV Core-core repulsion = 22335.504267 eV Total energy + Delta-G solvation = -3968.014015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77254 -38.85521 -38.19210 -37.45582 -37.06891 -36.31110 -35.89517 -33.48284 -32.27824 -31.44084 -29.66224 -27.89604 -27.03777 -24.62079 -23.70781 -23.09248 -22.00137 -20.38658 -19.44066 -18.89959 -18.20398 -17.39854 -17.19001 -16.99680 -16.73041 -16.48504 -16.35432 -16.18950 -16.10049 -15.33269 -15.20876 -14.81937 -14.63004 -14.46272 -13.88180 -13.82825 -13.69914 -13.40107 -13.24485 -13.14625 -13.07467 -13.02940 -12.84686 -12.47698 -12.34977 -12.33331 -12.22143 -12.10520 -11.94836 -11.74837 -11.70412 -11.30758 -10.82896 -10.60529 -10.49662 -9.87022 -9.60808 -8.35269 -6.40459 -0.76073 0.21523 0.30299 1.16938 1.33017 1.35631 1.44921 1.73374 2.30677 2.64699 2.72554 2.85643 2.99279 3.20613 3.44946 3.84473 3.88077 3.97572 4.02379 4.14374 4.14884 4.29861 4.36562 4.44621 4.49383 4.60274 4.61418 4.66644 4.70340 4.85710 4.94298 4.96817 5.08772 5.11924 5.25440 5.40757 5.48576 5.56513 5.85085 6.03684 6.17979 6.22381 6.65703 7.24063 8.80046 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.002866 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.320563 B = 9768.265921 C =10180.635555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.388 6.388 3 C 0.033 3.967 4 C 0.188 3.812 5 H 0.122 0.878 6 N -1.097 6.097 7 S 2.617 3.383 8 O -0.990 6.990 9 O -0.986 6.986 10 C -0.589 4.589 11 C -0.017 4.017 12 C -0.523 4.523 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.940 5.940 16 Si 0.922 3.078 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.250 1.250 20 C -0.075 4.075 21 C -0.090 4.090 22 C -0.107 4.107 23 C -0.112 4.112 24 C -0.047 4.047 25 Cl -0.075 7.075 26 C -0.113 4.113 27 H 0.098 0.902 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.426 0.574 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.031 0.969 36 H 0.033 0.967 37 H 0.269 0.731 38 H 0.139 0.861 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -15.413 -20.917 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.307 6.307 3 C -0.045 4.045 4 C 0.080 3.920 5 H 0.140 0.860 6 N -0.858 5.858 7 S 2.714 3.286 8 O -0.981 6.981 9 O -0.976 6.976 10 C -0.721 4.721 11 C -0.056 4.056 12 C -0.562 4.562 13 H 0.070 0.930 14 C -0.184 4.184 15 N -0.580 5.580 16 Si 0.745 3.255 17 H -0.185 1.185 18 H -0.202 1.202 19 H -0.173 1.173 20 C -0.077 4.077 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.131 4.131 24 C -0.074 4.074 25 Cl -0.046 7.046 26 C -0.132 4.132 27 H 0.117 0.883 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.264 0.736 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.157 0.843 39 H 0.175 0.825 40 H 0.166 0.834 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.973 -15.173 -20.577 26.045 hybrid contribution -0.620 0.643 0.519 1.033 sum 4.352 -14.530 -20.058 25.147 Atomic orbital electron populations 1.22893 0.80127 1.03712 1.00448 1.87835 1.20504 1.26827 1.95556 1.23323 0.92244 0.86264 1.02682 1.19984 0.92982 0.97289 0.81710 0.85993 1.55410 1.84628 1.20196 1.25552 1.04593 0.76917 0.74158 0.72973 1.93528 1.82800 1.62254 1.59490 1.93532 1.58852 1.67444 1.77758 1.30420 1.20356 1.12354 1.08921 1.19379 0.97908 0.95081 0.93263 1.21156 0.95760 1.23277 1.16028 0.92956 1.25836 0.99503 0.95203 0.97876 1.70007 1.29683 1.28412 1.29891 0.86068 0.80525 0.80277 0.78634 1.18523 1.20185 1.17314 1.19589 0.99535 0.94684 0.93919 1.21237 0.97087 0.92752 0.99742 1.21404 0.97629 1.01519 0.91943 1.21337 0.99655 0.92316 0.99754 1.20977 1.03546 0.93798 0.89081 1.98370 1.86844 1.82693 1.36723 1.21055 0.99176 1.01020 0.91983 0.88350 0.94231 0.93266 0.91682 0.90083 0.73635 0.83774 0.83971 0.95085 0.94875 0.92195 0.84284 0.82518 0.83373 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.62 16 2 O -0.39 -7.20 9.11 -148.98 -1.36 -8.56 16 3 C 0.03 0.61 5.74 71.98 0.41 1.02 16 4 C 0.19 3.72 2.84 44.25 0.13 3.84 16 5 H 0.12 2.32 7.35 -2.39 -0.02 2.30 16 6 N -1.10 -24.64 5.26 -172.52 -0.91 -25.55 16 7 S 2.62 81.51 5.44 -56.49 -0.31 81.20 16 8 O -0.99 -36.74 18.08 -127.65 -2.31 -39.05 16 9 O -0.99 -35.61 17.40 -127.65 -2.22 -37.83 16 10 C -0.59 -19.62 5.01 71.98 0.36 -19.25 16 11 C -0.02 -0.77 4.05 29.85 0.12 -0.65 16 12 C -0.52 -28.51 9.66 25.60 0.25 -28.26 16 13 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 14 C 0.01 0.81 5.47 84.65 0.46 1.28 16 15 N -0.94 -56.73 13.96 21.45 0.30 -56.43 16 16 Si 0.92 43.02 27.47 68.60 1.88 44.91 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 20 C -0.08 -1.41 4.83 -19.87 -0.10 -1.51 16 21 C -0.09 -1.49 8.16 22.27 0.18 -1.31 16 22 C -0.11 -1.47 10.04 22.26 0.22 -1.25 16 23 C -0.11 -1.65 9.83 22.29 0.22 -1.43 16 24 C -0.05 -0.84 6.32 22.33 0.14 -0.70 16 25 Cl -0.08 -1.30 28.96 -2.72 -0.08 -1.38 16 26 C -0.11 -2.09 9.45 22.29 0.21 -1.88 16 27 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 1.25 5.68 -2.38 -0.01 1.23 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.43 8.17 7.03 -96.74 -0.68 7.49 16 33 H 0.14 4.14 6.87 -2.40 -0.02 4.13 16 34 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 35 H 0.03 1.40 7.20 -2.38 -0.02 1.38 16 36 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 37 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 38 H 0.14 2.08 6.57 -2.91 -0.02 2.06 16 39 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 41 H 0.14 2.33 8.04 -2.91 -0.02 2.31 16 Total: -1.00 -72.96 368.27 -0.81 -73.78 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.32 Total: 17.37 kcal Atomic # 6 Polarization: -52.33 SS G_CDS: 3.86 Total: -48.47 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -0.61 Total: -81.98 kcal Atomic # 8 Polarization: -79.54 SS G_CDS: -5.89 Total: -85.43 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.91 kcal Atomic # 16 Polarization: 81.51 SS G_CDS: -0.31 Total: 81.20 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -72.96 -0.81 -73.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288321489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.711 kcal (2) G-P(sol) polarization free energy of solvation -72.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds