Wall clock time and date at job start Wed Apr 1 2020 04:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00149 * 2 1 4 4 C 1.50701 * 109.47056 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99132 * 89.99791 * 4 3 2 6 6 C 1.38327 * 119.98285 * 179.97438 * 5 4 3 7 7 Cl 1.73603 * 120.01558 * 180.02562 * 6 5 4 8 8 C 1.38375 * 119.97593 * 0.02562 * 6 5 4 9 9 C 1.38191 * 119.98462 * 359.97438 * 8 6 5 10 10 S 1.76199 * 119.99265 * 179.97438 * 9 8 6 11 11 O 1.42097 * 106.40354 * 203.54018 * 10 9 8 12 12 O 1.42107 * 106.40384 * 336.46220 * 10 9 8 13 13 N 1.65607 * 107.21942 * 89.99996 * 10 9 8 14 14 C 1.46499 * 119.99969 * 90.00109 * 13 10 9 15 15 C 1.46494 * 119.99713 * 270.00130 * 13 10 9 16 16 H 1.08999 * 109.47502 * 359.97438 * 15 13 10 17 17 C 1.52998 * 109.47257 * 120.00049 * 15 13 10 18 18 C 1.50701 * 109.47022 * 239.99758 * 15 13 10 19 19 H 1.08001 * 120.00171 * 0.02562 * 18 15 13 20 20 C 1.37875 * 120.00200 * 180.02562 * 18 15 13 21 21 N 1.31511 * 120.00252 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 120.00162 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47295 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47359 * 120.00178 * 22 20 18 25 25 H 1.48497 * 109.47335 * 240.00235 * 22 20 18 26 26 C 1.38221 * 119.99318 * 270.25340 * 4 3 2 27 27 H 1.09003 * 109.47758 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46880 * 300.00080 * 1 2 3 29 29 H 1.08994 * 109.47535 * 59.99860 * 1 2 3 30 30 H 1.09001 * 109.46853 * 60.00104 * 3 2 1 31 31 H 1.09003 * 109.46596 * 300.00020 * 3 2 1 32 32 H 1.07992 * 120.01028 * 0.02599 * 5 4 3 33 33 H 1.08005 * 120.00854 * 180.02562 * 8 6 5 34 34 H 1.08995 * 109.47366 * 89.99489 * 14 13 10 35 35 H 1.08992 * 109.47201 * 210.00178 * 14 13 10 36 36 H 1.08999 * 109.46673 * 330.00172 * 14 13 10 37 37 H 1.09007 * 109.47241 * 59.99647 * 17 15 13 38 38 H 1.08998 * 109.47613 * 179.97438 * 17 15 13 39 39 H 1.08998 * 109.47004 * 299.99841 * 17 15 13 40 40 H 0.96996 * 120.00639 * 179.97438 * 21 20 18 41 41 H 1.08005 * 119.98637 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2009 1.1320 -1.1982 6 6 5.5799 1.0232 -1.1986 7 17 6.4453 0.9555 -2.7020 8 6 6.2694 0.9684 -0.0001 9 6 5.5801 1.0229 1.1964 10 16 6.4579 0.9525 2.7226 11 8 5.5355 0.4795 3.6945 12 8 7.6937 0.3081 2.4454 13 7 6.8276 2.5098 3.1477 14 6 5.8957 3.2856 3.9699 15 6 8.0866 3.1115 2.7017 16 1 8.6440 2.3885 2.1062 17 6 7.7880 4.3494 1.8536 18 6 8.9056 3.5107 3.9021 19 1 8.5264 3.3335 4.8977 20 6 10.1390 4.1021 3.7294 21 7 10.6007 4.3184 2.5172 22 14 11.1539 4.5976 5.2174 23 1 10.4155 4.2504 6.4581 24 1 12.4513 3.8755 5.1945 25 1 11.4014 6.0614 5.1827 26 6 4.2014 1.1263 1.1962 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.6623 1.1752 -2.1332 33 1 7.3462 0.8840 0.0002 34 1 6.1294 3.1355 5.0238 35 1 5.9885 4.3434 3.7242 36 1 4.8759 2.9549 3.7732 37 1 7.2308 5.0723 2.4495 38 1 8.7248 4.7974 1.5221 39 1 7.1957 4.0607 0.9854 40 1 11.4683 4.7348 2.3956 41 1 3.6628 1.1643 2.1316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289821743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:59 Heat of formation + Delta-G solvation = -93.675989 kcal Electronic energy + Delta-G solvation = -26693.237429 eV Core-core repulsion = 22726.689634 eV Total energy + Delta-G solvation = -3966.547794 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.77676 -37.89676 -36.79787 -36.54596 -36.23725 -35.32320 -32.62418 -32.41068 -31.13977 -29.14200 -27.65583 -25.71004 -25.64147 -25.17588 -23.44726 -22.05968 -20.73689 -18.53036 -17.67223 -16.95568 -16.72186 -16.63895 -16.35854 -16.05880 -15.60592 -15.37931 -15.05170 -14.78868 -14.41882 -13.73983 -13.53978 -13.24434 -13.03671 -12.85436 -12.71405 -12.34303 -12.06473 -11.97878 -11.85136 -11.73815 -11.58369 -11.52007 -11.40195 -11.26698 -11.23113 -11.00801 -10.83632 -10.62890 -10.42355 -10.29290 -10.05245 -10.03019 -9.47753 -9.28311 -8.93382 -8.48100 -8.03205 -6.09346 -4.16106 0.55037 0.90061 0.92748 1.95713 2.96658 3.27366 3.35844 3.39692 3.59391 3.74093 4.22470 4.37202 4.39418 4.64536 4.70167 4.76838 4.92974 4.94545 5.04134 5.06409 5.14917 5.22337 5.35191 5.39639 5.50652 5.52679 5.84581 5.93202 6.03094 6.09138 6.30101 6.43781 6.56926 6.73004 6.76208 6.77117 6.97059 7.37309 7.59161 7.75119 8.00705 8.23563 8.86361 9.49912 10.96415 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.003610 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.964556 B = 7754.856626 C = 8871.864421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.105 3.895 4 C -0.107 4.107 5 C -0.042 4.042 6 C -0.058 4.058 7 Cl -0.061 7.061 8 C 0.003 3.997 9 C -0.662 4.662 10 S 2.682 3.318 11 O -0.968 6.968 12 O -0.946 6.946 13 N -0.977 5.977 14 C 0.107 3.893 15 C 0.265 3.735 16 H 0.062 0.938 17 C -0.151 4.151 18 C -0.519 4.519 19 H 0.065 0.935 20 C 0.064 3.936 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.003 3.997 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.155 0.845 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.095 0.905 39 H 0.010 0.990 40 H 0.263 0.737 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.605 -3.308 -8.062 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.029 3.971 4 C -0.108 4.108 5 C -0.061 4.061 6 C -0.085 4.085 7 Cl -0.032 7.032 8 C -0.017 4.017 9 C -0.745 4.745 10 S 2.769 3.231 11 O -0.958 6.958 12 O -0.936 6.936 13 N -0.818 5.818 14 C -0.039 4.039 15 C 0.163 3.837 16 H 0.079 0.921 17 C -0.210 4.210 18 C -0.559 4.559 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.726 3.274 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.017 4.017 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.113 0.887 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.078 -4.154 -7.865 19.256 hybrid contribution 0.135 0.937 -0.148 0.958 sum -16.943 -3.217 -8.013 19.016 Atomic orbital electron populations 1.22780 0.80713 1.03032 1.00110 1.87993 1.19829 1.27138 1.95437 1.21317 0.88802 0.85412 1.01615 1.19561 0.94579 1.03822 0.92806 1.21127 0.92015 0.94329 0.98674 1.20921 0.92575 1.07267 0.87761 1.98382 1.76669 1.96882 1.31239 1.20953 1.01257 0.90145 0.89357 1.31660 1.06234 1.15208 1.21397 1.02424 0.73348 0.73858 0.73438 1.93523 1.65622 1.79522 1.57179 1.93591 1.41652 1.73134 1.85249 1.57445 1.29201 1.32161 1.63006 1.21222 0.89954 0.97622 0.95139 1.18839 0.77704 0.92198 0.94972 0.92069 1.22148 1.02183 0.99736 0.96927 1.21343 1.01907 1.39912 0.92727 0.91719 1.24904 0.97339 0.95492 0.96113 1.69858 1.19283 1.43284 1.20373 0.86432 0.80156 0.78003 0.82770 1.19679 1.20868 1.21020 1.20893 0.92015 0.89998 0.98745 0.89412 0.93773 0.93982 0.91574 0.91917 0.84334 0.82774 0.92755 0.90679 0.93172 0.94612 0.88663 0.97060 0.92687 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.15 10.69 -35.23 -0.38 -4.52 16 3 C 0.10 0.99 6.06 36.01 0.22 1.21 16 4 C -0.11 -1.30 5.51 -104.63 -0.58 -1.87 16 5 C -0.04 -0.51 9.49 -39.55 -0.38 -0.88 16 6 C -0.06 -0.80 6.32 -39.50 -0.25 -1.05 16 7 Cl -0.06 -0.77 28.96 -51.86 -1.50 -2.28 16 8 C 0.00 0.04 9.31 -39.55 -0.37 -0.33 16 9 C -0.66 -10.74 5.97 -39.59 -0.24 -10.98 16 10 S 2.68 51.80 5.64 -107.50 -0.61 51.20 16 11 O -0.97 -19.22 16.35 -57.17 -0.93 -20.15 16 12 O -0.95 -21.32 15.85 -57.17 -0.91 -22.23 16 13 N -0.98 -19.61 3.06 -115.86 -0.35 -19.97 16 14 C 0.11 1.80 9.53 59.85 0.57 2.37 16 15 C 0.27 6.28 2.62 -69.09 -0.18 6.10 16 16 H 0.06 1.59 6.91 -51.93 -0.36 1.23 16 17 C -0.15 -3.32 8.95 37.16 0.33 -2.98 16 18 C -0.52 -13.61 8.37 -34.44 -0.29 -13.90 16 19 H 0.06 1.69 7.65 -52.49 -0.40 1.28 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 22 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.00 0.04 9.18 -39.58 -0.36 -0.32 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.15 2.52 7.62 -52.48 -0.40 2.12 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 36 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 37 H 0.03 0.74 6.66 -51.92 -0.35 0.39 16 38 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.15 1.81 7.61 -52.48 -0.40 1.41 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -31.42 370.31 -9.46 -40.88 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.47 Total: -0.91 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -0.50 Total: -19.72 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.27 Total: -43.59 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -2.22 Total: -46.90 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 51.80 SS G_CDS: -0.61 Total: 51.20 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.42 -9.46 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289821743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.796 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds