Wall clock time and date at job start Wed Apr 1 2020 04:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00149 * 2 1 4 4 C 1.50701 * 109.47056 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99132 * 89.99791 * 4 3 2 6 6 C 1.38327 * 119.98285 * 179.97438 * 5 4 3 7 7 Cl 1.73603 * 120.01558 * 180.02562 * 6 5 4 8 8 C 1.38375 * 119.97593 * 0.02562 * 6 5 4 9 9 C 1.38191 * 119.98462 * 359.97438 * 8 6 5 10 10 S 1.76199 * 119.99265 * 179.97438 * 9 8 6 11 11 O 1.42097 * 106.40354 * 203.54018 * 10 9 8 12 12 O 1.42107 * 106.40384 * 336.46220 * 10 9 8 13 13 N 1.65607 * 107.21942 * 89.99996 * 10 9 8 14 14 C 1.46499 * 119.99969 * 90.00109 * 13 10 9 15 15 C 1.46494 * 119.99713 * 270.00130 * 13 10 9 16 16 H 1.08999 * 109.47502 * 359.97438 * 15 13 10 17 17 C 1.52998 * 109.47257 * 120.00049 * 15 13 10 18 18 C 1.50701 * 109.47022 * 239.99758 * 15 13 10 19 19 H 1.08001 * 120.00171 * 0.02562 * 18 15 13 20 20 C 1.37875 * 120.00200 * 180.02562 * 18 15 13 21 21 N 1.31511 * 120.00252 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 120.00162 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47295 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47359 * 120.00178 * 22 20 18 25 25 H 1.48497 * 109.47335 * 240.00235 * 22 20 18 26 26 C 1.38221 * 119.99318 * 270.25340 * 4 3 2 27 27 H 1.09003 * 109.47758 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46880 * 300.00080 * 1 2 3 29 29 H 1.08994 * 109.47535 * 59.99860 * 1 2 3 30 30 H 1.09001 * 109.46853 * 60.00104 * 3 2 1 31 31 H 1.09003 * 109.46596 * 300.00020 * 3 2 1 32 32 H 1.07992 * 120.01028 * 0.02599 * 5 4 3 33 33 H 1.08005 * 120.00854 * 180.02562 * 8 6 5 34 34 H 1.08995 * 109.47366 * 89.99489 * 14 13 10 35 35 H 1.08992 * 109.47201 * 210.00178 * 14 13 10 36 36 H 1.08999 * 109.46673 * 330.00172 * 14 13 10 37 37 H 1.09007 * 109.47241 * 59.99647 * 17 15 13 38 38 H 1.08998 * 109.47613 * 179.97438 * 17 15 13 39 39 H 1.08998 * 109.47004 * 299.99841 * 17 15 13 40 40 H 0.96996 * 120.00639 * 179.97438 * 21 20 18 41 41 H 1.08005 * 119.98637 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2009 1.1320 -1.1982 6 6 5.5799 1.0232 -1.1986 7 17 6.4453 0.9555 -2.7020 8 6 6.2694 0.9684 -0.0001 9 6 5.5801 1.0229 1.1964 10 16 6.4579 0.9525 2.7226 11 8 5.5355 0.4795 3.6945 12 8 7.6937 0.3081 2.4454 13 7 6.8276 2.5098 3.1477 14 6 5.8957 3.2856 3.9699 15 6 8.0866 3.1115 2.7017 16 1 8.6440 2.3885 2.1062 17 6 7.7880 4.3494 1.8536 18 6 8.9056 3.5107 3.9021 19 1 8.5264 3.3335 4.8977 20 6 10.1390 4.1021 3.7294 21 7 10.6007 4.3184 2.5172 22 14 11.1539 4.5976 5.2174 23 1 10.4155 4.2504 6.4581 24 1 12.4513 3.8755 5.1945 25 1 11.4014 6.0614 5.1827 26 6 4.2014 1.1263 1.1962 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.6623 1.1752 -2.1332 33 1 7.3462 0.8840 0.0002 34 1 6.1294 3.1355 5.0238 35 1 5.9885 4.3434 3.7242 36 1 4.8759 2.9549 3.7732 37 1 7.2308 5.0723 2.4495 38 1 8.7248 4.7974 1.5221 39 1 7.1957 4.0607 0.9854 40 1 11.4683 4.7348 2.3956 41 1 3.6628 1.1643 2.1316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289821743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:58 Heat of formation + Delta-G solvation = -114.230708 kcal Electronic energy + Delta-G solvation = -26694.128748 eV Core-core repulsion = 22726.689634 eV Total energy + Delta-G solvation = -3967.439114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.78910 -38.64591 -38.39616 -37.92838 -37.57786 -36.94643 -34.53421 -33.40362 -32.22363 -30.92307 -28.34830 -27.29114 -27.01767 -26.37835 -24.59085 -23.10621 -22.48551 -19.94367 -19.03717 -18.59425 -18.20484 -17.57572 -17.36328 -17.23867 -16.94308 -16.52331 -16.31350 -15.91249 -15.70648 -15.24044 -14.83047 -14.79918 -14.55330 -13.92921 -13.74397 -13.55096 -13.40950 -13.21432 -13.19098 -13.17203 -12.98779 -12.86718 -12.79120 -12.74445 -12.58902 -12.38104 -12.29864 -12.19891 -12.14108 -11.91976 -11.70468 -11.13836 -10.65469 -10.55740 -10.49374 -10.00626 -9.67983 -8.10637 -6.24062 -0.71748 -0.42692 -0.16895 0.90110 1.42989 1.46247 1.56476 1.84927 2.21953 2.45352 2.73111 2.95753 3.18114 3.28117 3.57485 3.73653 3.81837 3.96923 4.02716 4.09077 4.24754 4.45767 4.49019 4.58863 4.62107 4.68158 4.74998 4.83142 4.86471 4.92392 4.98128 5.02691 5.07730 5.12891 5.20020 5.39353 5.62475 5.71675 5.86889 6.11944 6.18618 6.29984 6.83509 7.44924 8.93869 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.003610 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.964556 B = 7754.856626 C = 8871.864421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.103 3.897 4 C -0.099 4.099 5 C -0.030 4.030 6 C -0.062 4.062 7 Cl -0.053 7.053 8 C -0.020 4.020 9 C -0.666 4.666 10 S 2.690 3.310 11 O -0.978 6.978 12 O -0.991 6.991 13 N -0.985 5.985 14 C 0.097 3.903 15 C 0.271 3.729 16 H 0.029 0.971 17 C -0.137 4.137 18 C -0.536 4.536 19 H 0.059 0.941 20 C 0.018 3.982 21 N -0.914 5.914 22 Si 0.955 3.045 23 H -0.269 1.269 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.002 4.002 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.172 0.828 33 H 0.137 0.863 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.264 0.736 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.460 -2.613 -8.733 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.027 3.973 4 C -0.101 4.101 5 C -0.049 4.049 6 C -0.090 4.090 7 Cl -0.024 7.024 8 C -0.040 4.040 9 C -0.754 4.754 10 S 2.783 3.217 11 O -0.968 6.968 12 O -0.981 6.981 13 N -0.825 5.825 14 C -0.048 4.048 15 C 0.167 3.833 16 H 0.046 0.954 17 C -0.197 4.197 18 C -0.576 4.576 19 H 0.078 0.922 20 C -0.182 4.182 21 N -0.553 5.553 22 Si 0.781 3.219 23 H -0.193 1.193 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.021 4.021 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.190 0.810 33 H 0.155 0.845 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.929 -3.454 -8.479 21.931 hybrid contribution 0.891 0.651 -0.037 1.104 sum -19.038 -2.802 -8.516 21.043 Atomic orbital electron populations 1.22969 0.78863 1.03896 1.01418 1.87939 1.21877 1.27829 1.95743 1.21459 0.86505 0.85493 1.03864 1.19931 0.96443 1.01809 0.91895 1.21544 0.91113 0.92016 1.00189 1.20994 0.93459 1.07215 0.87315 1.98384 1.76802 1.96844 1.30393 1.20894 1.00754 0.91916 0.90457 1.30956 1.07058 1.18161 1.19245 1.01708 0.72707 0.73203 0.74051 1.93497 1.65339 1.79567 1.58422 1.93531 1.44284 1.74190 1.86116 1.57286 1.28864 1.32267 1.64095 1.21474 0.91028 0.97845 0.94413 1.18493 0.78841 0.91999 0.94009 0.95372 1.21940 1.01265 0.98967 0.97517 1.21661 1.02689 1.39857 0.93377 0.92236 1.25624 0.98394 0.95666 0.98469 1.69975 1.19581 1.43836 1.21880 0.85549 0.78433 0.77956 0.79953 1.19285 1.21121 1.20049 1.21159 0.90941 0.89586 1.00444 0.88916 0.92782 0.92322 0.89922 0.89178 0.81024 0.84542 0.93321 0.90001 0.89674 0.93433 0.91278 0.95050 0.92629 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.51 10.69 -148.98 -1.59 -9.10 16 3 C 0.10 1.51 6.06 71.24 0.43 1.94 16 4 C -0.10 -2.10 5.51 -19.87 -0.11 -2.21 16 5 C -0.03 -0.63 9.49 22.29 0.21 -0.42 16 6 C -0.06 -1.64 6.32 22.32 0.14 -1.50 16 7 Cl -0.05 -1.30 28.96 -2.72 -0.08 -1.38 16 8 C -0.02 -0.65 9.31 22.29 0.21 -0.44 16 9 C -0.67 -21.45 5.97 22.26 0.13 -21.32 16 10 S 2.69 106.22 5.64 -56.49 -0.32 105.90 16 11 O -0.98 -38.77 16.35 -128.00 -2.09 -40.86 16 12 O -0.99 -47.17 15.85 -128.00 -2.03 -49.20 16 13 N -0.99 -39.97 3.06 -520.48 -1.59 -41.56 16 14 C 0.10 3.19 9.53 127.77 1.22 4.41 16 15 C 0.27 13.16 2.62 44.25 0.12 13.28 16 16 H 0.03 1.56 6.91 -2.39 -0.02 1.54 16 17 C -0.14 -6.10 8.95 71.98 0.64 -5.46 16 18 C -0.54 -28.71 8.37 25.60 0.21 -28.50 16 19 H 0.06 3.16 7.65 -2.91 -0.02 3.14 16 20 C 0.02 0.99 5.30 84.65 0.45 1.44 16 21 N -0.91 -50.96 11.32 21.45 0.24 -50.72 16 22 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 C 0.00 -0.05 9.18 22.27 0.20 0.15 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 31 H 0.09 0.85 8.08 -2.39 -0.02 0.84 16 32 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.14 4.77 7.62 -2.91 -0.02 4.75 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 2.55 6.43 -2.39 -0.02 2.53 16 36 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 37 H 0.05 1.94 6.66 -2.38 -0.02 1.93 16 38 H 0.07 3.46 6.07 -2.39 -0.01 3.44 16 39 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.16 3.58 7.61 -2.91 -0.02 3.56 16 Total: -1.00 -69.28 370.31 0.72 -68.56 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.04 Total: 10.47 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 5.11 Total: -37.12 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -1.35 Total: -92.28 kcal Atomic # 8 Polarization: -93.45 SS G_CDS: -5.71 Total: -99.16 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 106.22 SS G_CDS: -0.32 Total: 105.90 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -69.28 0.72 -68.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289821743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.671 kcal (2) G-P(sol) polarization free energy of solvation -69.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds