Wall clock time and date at job start Wed Apr 1 2020 04:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00210 * 2 1 4 4 C 1.50700 * 109.46864 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99193 * 90.00501 * 4 3 2 6 6 C 1.38334 * 119.98730 * 179.97438 * 5 4 3 7 7 Cl 1.73603 * 120.01226 * 180.02562 * 6 5 4 8 8 C 1.38372 * 119.97418 * 0.02562 * 6 5 4 9 9 C 1.38199 * 119.98616 * 359.97438 * 8 6 5 10 10 S 1.76195 * 119.99387 * 179.97438 * 9 8 6 11 11 O 1.42104 * 106.40196 * 336.46116 * 10 9 8 12 12 O 1.42094 * 106.40134 * 203.54286 * 10 9 8 13 13 N 1.65605 * 107.21956 * 89.99852 * 10 9 8 14 14 C 1.46495 * 119.99702 * 270.00036 * 13 10 9 15 15 C 1.46493 * 119.99671 * 89.99822 * 13 10 9 16 16 H 1.09001 * 109.47786 * 0.02562 * 15 13 10 17 17 C 1.52997 * 109.47395 * 240.00012 * 15 13 10 18 18 C 1.50706 * 109.47128 * 120.00164 * 15 13 10 19 19 H 1.08000 * 119.99302 * 359.97438 * 18 15 13 20 20 C 1.37871 * 120.00436 * 179.72498 * 18 15 13 21 21 N 1.31515 * 119.99684 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00405 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47050 * 59.99579 * 22 20 18 24 24 H 1.48496 * 109.47289 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46492 * 299.99554 * 22 20 18 26 26 C 1.38219 * 119.99751 * 270.25632 * 4 3 2 27 27 H 1.08994 * 109.47316 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46349 * 299.99845 * 1 2 3 29 29 H 1.09001 * 109.46865 * 59.99184 * 1 2 3 30 30 H 1.08999 * 109.46570 * 60.00477 * 3 2 1 31 31 H 1.08994 * 109.47328 * 300.00417 * 3 2 1 32 32 H 1.08000 * 120.00671 * 0.02562 * 5 4 3 33 33 H 1.08002 * 120.00902 * 180.02562 * 8 6 5 34 34 H 1.09001 * 109.47422 * 269.99253 * 14 13 10 35 35 H 1.08999 * 109.47640 * 30.00487 * 14 13 10 36 36 H 1.09007 * 109.46983 * 150.00110 * 14 13 10 37 37 H 1.09002 * 109.46917 * 60.00126 * 17 15 13 38 38 H 1.08995 * 109.47505 * 180.02562 * 17 15 13 39 39 H 1.09001 * 109.47000 * 300.00906 * 17 15 13 40 40 H 0.97004 * 120.00247 * 180.02562 * 21 20 18 41 41 H 1.08003 * 119.98370 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.2010 1.1320 -1.1982 6 6 5.5800 1.0232 -1.1987 7 17 6.4452 0.9556 -2.7022 8 6 6.2696 0.9683 -0.0002 9 6 5.5803 1.0226 1.1964 10 16 6.4581 0.9520 2.7225 11 8 7.6938 0.3075 2.4451 12 8 5.5357 0.4788 3.6943 13 7 6.8280 2.5091 3.1478 14 6 8.0870 3.1108 2.7018 15 6 5.8961 3.2848 3.9700 16 1 5.0227 2.6755 4.2025 17 6 5.4575 4.5340 3.2031 18 6 6.5772 3.6948 5.2503 19 1 7.6017 3.4059 5.4333 20 6 5.8943 4.4429 6.1856 21 7 4.6486 4.7992 5.9602 22 14 6.7388 4.9516 7.7722 23 1 7.9324 5.7763 7.4553 24 1 5.7965 5.7440 8.6025 25 1 7.1590 3.7393 8.5199 26 6 4.2015 1.1261 1.1961 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 1.6887 1.8462 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.6623 1.1754 -2.1332 33 1 7.3463 0.8837 0.0001 34 1 8.8641 2.9175 3.4413 35 1 8.3789 2.6762 1.7458 36 1 7.9548 4.1867 2.5865 37 1 4.9648 4.2375 2.2771 38 1 4.7645 5.1114 3.8150 39 1 6.3310 5.1431 2.9709 40 1 4.1681 5.3258 6.6181 41 1 3.6629 1.1641 2.1315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289821747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:03 Heat of formation + Delta-G solvation = -93.986304 kcal Electronic energy + Delta-G solvation = -26768.728146 eV Core-core repulsion = 22802.166895 eV Total energy + Delta-G solvation = -3966.561251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.75849 -37.82187 -36.80112 -36.61257 -36.24422 -35.32482 -32.63574 -32.39405 -31.12548 -29.14817 -27.58864 -25.68686 -25.58507 -25.18234 -23.46555 -22.01196 -20.75963 -18.52494 -17.67093 -16.95457 -16.61951 -16.58170 -16.40267 -16.04625 -15.49372 -15.41391 -15.01962 -14.76691 -14.43430 -13.77127 -13.55095 -13.23955 -13.01549 -12.86353 -12.61970 -12.32270 -12.05490 -11.94580 -11.87003 -11.72802 -11.54819 -11.51456 -11.40032 -11.30952 -11.26943 -10.99804 -10.83584 -10.65919 -10.44246 -10.32087 -10.03656 -9.93836 -9.48188 -9.30856 -8.94861 -8.48563 -8.03969 -6.10664 -4.17287 0.54811 0.90281 0.92740 1.88021 2.98199 3.29354 3.33657 3.37078 3.61007 3.79512 4.22151 4.37773 4.43061 4.66483 4.70182 4.84205 4.97581 5.02876 5.10565 5.14919 5.21014 5.22916 5.42924 5.46249 5.51668 5.53593 5.81465 5.91817 6.09398 6.10377 6.30876 6.44806 6.57110 6.71150 6.75211 6.86911 6.95254 7.36415 7.57651 7.73767 7.99149 8.22379 8.84526 9.48634 10.94967 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011504 B = 0.003867 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.420496 B = 7239.740772 C = 8588.118457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.102 3.898 4 C -0.102 4.102 5 C -0.042 4.042 6 C -0.061 4.061 7 Cl -0.065 7.065 8 C -0.006 4.006 9 C -0.662 4.662 10 S 2.682 3.318 11 O -0.969 6.969 12 O -0.946 6.946 13 N -0.977 5.977 14 C 0.106 3.894 15 C 0.266 3.734 16 H 0.061 0.939 17 C -0.151 4.151 18 C -0.520 4.520 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.891 5.891 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.012 3.988 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.010 0.990 38 H 0.095 0.905 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 -4.360 -15.743 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.026 3.974 4 C -0.103 4.103 5 C -0.061 4.061 6 C -0.088 4.088 7 Cl -0.037 7.037 8 C -0.026 4.026 9 C -0.745 4.745 10 S 2.770 3.230 11 O -0.959 6.959 12 O -0.936 6.936 13 N -0.818 5.818 14 C -0.040 4.040 15 C 0.163 3.837 16 H 0.079 0.921 17 C -0.210 4.210 18 C -0.559 4.559 19 H 0.082 0.918 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.008 4.008 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.167 0.833 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.029 0.971 38 H 0.114 0.886 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.032 -5.177 -15.371 16.713 hybrid contribution -0.073 0.952 -0.014 0.955 sum -4.104 -4.225 -15.385 16.474 Atomic orbital electron populations 1.22784 0.80650 1.02986 1.00218 1.87973 1.19906 1.27109 1.95473 1.21345 0.88670 0.85461 1.01912 1.19605 0.94788 1.03186 0.92694 1.21135 0.91992 0.94303 0.98710 1.20884 0.92621 1.07860 0.87433 1.98371 1.76718 1.96982 1.31591 1.20837 1.00733 0.91598 0.89435 1.31669 1.06512 1.15206 1.21117 1.02416 0.73571 0.73742 0.73315 1.93525 1.42682 1.73838 1.85830 1.93589 1.64830 1.78842 1.56332 1.57439 1.28170 1.32655 1.63545 1.21232 0.85149 0.99928 0.97674 1.18826 0.87835 0.89153 0.87848 0.92109 1.22151 1.00896 1.00435 0.97519 1.21273 0.99574 1.33690 1.01410 0.91824 1.24889 0.94898 0.95615 0.98354 1.69836 1.09654 1.37870 1.35567 0.86541 0.79169 0.78673 0.82947 1.20220 1.21228 1.20081 1.21011 0.92096 0.88519 0.99127 0.89447 0.93583 0.94032 0.91149 0.91911 0.84324 0.83267 0.92745 0.93095 0.90674 0.97110 0.88646 0.94589 0.92611 0.83210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.63 10.69 -35.23 -0.38 -5.01 16 3 C 0.10 1.12 6.06 36.01 0.22 1.34 16 4 C -0.10 -1.33 5.51 -104.63 -0.58 -1.91 16 5 C -0.04 -0.51 9.49 -39.55 -0.38 -0.88 16 6 C -0.06 -0.78 6.32 -39.50 -0.25 -1.03 16 7 Cl -0.07 -0.74 28.96 -51.86 -1.50 -2.24 16 8 C -0.01 -0.09 9.31 -39.55 -0.37 -0.46 16 9 C -0.66 -10.74 5.97 -39.59 -0.24 -10.97 16 10 S 2.68 51.76 5.64 -107.50 -0.61 51.15 16 11 O -0.97 -19.35 16.36 -57.17 -0.94 -20.29 16 12 O -0.95 -21.16 15.84 -57.17 -0.91 -22.06 16 13 N -0.98 -19.59 3.06 -115.86 -0.35 -19.94 16 14 C 0.11 1.81 9.53 59.84 0.57 2.38 16 15 C 0.27 6.23 2.63 -69.08 -0.18 6.05 16 16 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 17 C -0.15 -3.27 8.95 37.16 0.33 -2.94 16 18 C -0.52 -13.53 8.37 -34.44 -0.29 -13.82 16 19 H 0.06 1.65 7.65 -52.49 -0.40 1.24 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 21 N -0.89 -23.94 11.30 55.43 0.63 -23.31 16 22 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.01 0.18 9.18 -39.58 -0.36 -0.18 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 31 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.15 1.98 7.62 -52.49 -0.40 1.58 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.72 7.79 -51.93 -0.40 0.31 16 36 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 37 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.10 2.30 6.05 -51.93 -0.31 1.98 16 39 H 0.04 0.74 6.66 -51.93 -0.35 0.39 16 40 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.15 2.32 7.61 -52.48 -0.40 1.92 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -30.88 370.28 -9.46 -40.34 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.47 Total: -0.37 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -0.50 Total: -19.45 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.27 Total: -43.26 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -2.22 Total: -47.36 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 51.76 SS G_CDS: -0.61 Total: 51.15 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.88 -9.46 -40.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289821747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.644 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds