Wall clock time and date at job start Wed Apr 1 2020 04:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00210 * 2 1 4 4 C 1.50700 * 109.46864 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99193 * 90.00501 * 4 3 2 6 6 C 1.38334 * 119.98730 * 179.97438 * 5 4 3 7 7 Cl 1.73603 * 120.01226 * 180.02562 * 6 5 4 8 8 C 1.38372 * 119.97418 * 0.02562 * 6 5 4 9 9 C 1.38199 * 119.98616 * 359.97438 * 8 6 5 10 10 S 1.76195 * 119.99387 * 179.97438 * 9 8 6 11 11 O 1.42104 * 106.40196 * 336.46116 * 10 9 8 12 12 O 1.42094 * 106.40134 * 203.54286 * 10 9 8 13 13 N 1.65605 * 107.21956 * 89.99852 * 10 9 8 14 14 C 1.46495 * 119.99702 * 270.00036 * 13 10 9 15 15 C 1.46493 * 119.99671 * 89.99822 * 13 10 9 16 16 H 1.09001 * 109.47786 * 0.02562 * 15 13 10 17 17 C 1.52997 * 109.47395 * 240.00012 * 15 13 10 18 18 C 1.50706 * 109.47128 * 120.00164 * 15 13 10 19 19 H 1.08000 * 119.99302 * 359.97438 * 18 15 13 20 20 C 1.37871 * 120.00436 * 179.72498 * 18 15 13 21 21 N 1.31515 * 119.99684 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00405 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47050 * 59.99579 * 22 20 18 24 24 H 1.48496 * 109.47289 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46492 * 299.99554 * 22 20 18 26 26 C 1.38219 * 119.99751 * 270.25632 * 4 3 2 27 27 H 1.08994 * 109.47316 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46349 * 299.99845 * 1 2 3 29 29 H 1.09001 * 109.46865 * 59.99184 * 1 2 3 30 30 H 1.08999 * 109.46570 * 60.00477 * 3 2 1 31 31 H 1.08994 * 109.47328 * 300.00417 * 3 2 1 32 32 H 1.08000 * 120.00671 * 0.02562 * 5 4 3 33 33 H 1.08002 * 120.00902 * 180.02562 * 8 6 5 34 34 H 1.09001 * 109.47422 * 269.99253 * 14 13 10 35 35 H 1.08999 * 109.47640 * 30.00487 * 14 13 10 36 36 H 1.09007 * 109.46983 * 150.00110 * 14 13 10 37 37 H 1.09002 * 109.46917 * 60.00126 * 17 15 13 38 38 H 1.08995 * 109.47505 * 180.02562 * 17 15 13 39 39 H 1.09001 * 109.47000 * 300.00906 * 17 15 13 40 40 H 0.97004 * 120.00247 * 180.02562 * 21 20 18 41 41 H 1.08003 * 119.98370 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.2010 1.1320 -1.1982 6 6 5.5800 1.0232 -1.1987 7 17 6.4452 0.9556 -2.7022 8 6 6.2696 0.9683 -0.0002 9 6 5.5803 1.0226 1.1964 10 16 6.4581 0.9520 2.7225 11 8 7.6938 0.3075 2.4451 12 8 5.5357 0.4788 3.6943 13 7 6.8280 2.5091 3.1478 14 6 8.0870 3.1108 2.7018 15 6 5.8961 3.2848 3.9700 16 1 5.0227 2.6755 4.2025 17 6 5.4575 4.5340 3.2031 18 6 6.5772 3.6948 5.2503 19 1 7.6017 3.4059 5.4333 20 6 5.8943 4.4429 6.1856 21 7 4.6486 4.7992 5.9602 22 14 6.7388 4.9516 7.7722 23 1 7.9324 5.7763 7.4553 24 1 5.7965 5.7440 8.6025 25 1 7.1590 3.7393 8.5199 26 6 4.2015 1.1261 1.1961 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 1.6887 1.8462 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.6623 1.1754 -2.1332 33 1 7.3463 0.8837 0.0001 34 1 8.8641 2.9175 3.4413 35 1 8.3789 2.6762 1.7458 36 1 7.9548 4.1867 2.5865 37 1 4.9648 4.2375 2.2771 38 1 4.7645 5.1114 3.8150 39 1 6.3310 5.1431 2.9709 40 1 4.1681 5.3258 6.6181 41 1 3.6629 1.1641 2.1315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289821747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:02 Heat of formation + Delta-G solvation = -113.859820 kcal Electronic energy + Delta-G solvation = -26769.589926 eV Core-core repulsion = 22802.166895 eV Total energy + Delta-G solvation = -3967.423031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79411 -38.66993 -38.40122 -37.92483 -37.57453 -36.94842 -34.52917 -33.41877 -32.20827 -30.91459 -28.38589 -27.28402 -27.01821 -26.40651 -24.62426 -23.05507 -22.51466 -19.94717 -19.02852 -18.59132 -18.20880 -17.59873 -17.39641 -17.22954 -16.94486 -16.50515 -16.36313 -15.91393 -15.71209 -15.24788 -14.83342 -14.78851 -14.53740 -13.95577 -13.74556 -13.55988 -13.41060 -13.23639 -13.18957 -13.15899 -12.99023 -12.86391 -12.77456 -12.74765 -12.59161 -12.38374 -12.32062 -12.21433 -12.14207 -11.91692 -11.70365 -11.14914 -10.69642 -10.56003 -10.47443 -10.00345 -9.68199 -8.09863 -6.22939 -0.71847 -0.42814 -0.17050 0.88936 1.45576 1.47419 1.54091 1.84858 2.21478 2.46063 2.73355 2.92919 3.18812 3.27373 3.56533 3.73345 3.80740 3.95054 4.01832 4.08364 4.24167 4.43471 4.47794 4.55812 4.58980 4.68258 4.73247 4.82412 4.85275 4.88438 4.99387 5.03142 5.08537 5.13273 5.19006 5.37694 5.62661 5.72108 5.87430 6.12679 6.13903 6.30922 6.83454 7.45685 8.94109 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011504 B = 0.003867 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.420496 B = 7239.740772 C = 8588.118457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.100 3.900 4 C -0.100 4.100 5 C -0.029 4.029 6 C -0.060 4.060 7 Cl -0.045 7.045 8 C -0.014 4.014 9 C -0.666 4.666 10 S 2.691 3.309 11 O -0.981 6.981 12 O -0.988 6.988 13 N -0.985 5.985 14 C 0.098 3.902 15 C 0.270 3.730 16 H 0.031 0.969 17 C -0.137 4.137 18 C -0.539 4.539 19 H 0.058 0.942 20 C 0.021 3.979 21 N -0.912 5.912 22 Si 0.953 3.047 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.279 1.279 26 C -0.008 4.008 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.265 0.735 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 -3.934 -18.201 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.024 3.976 4 C -0.102 4.102 5 C -0.048 4.048 6 C -0.088 4.088 7 Cl -0.016 7.016 8 C -0.034 4.034 9 C -0.754 4.754 10 S 2.784 3.216 11 O -0.971 6.971 12 O -0.979 6.979 13 N -0.825 5.825 14 C -0.047 4.047 15 C 0.166 3.834 16 H 0.049 0.951 17 C -0.197 4.197 18 C -0.578 4.578 19 H 0.076 0.924 20 C -0.179 4.179 21 N -0.551 5.551 22 Si 0.779 3.221 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.205 1.205 26 C -0.028 4.028 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.191 0.809 33 H 0.176 0.824 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.141 -4.747 -17.794 18.876 hybrid contribution -0.067 0.744 0.598 0.957 sum -4.208 -4.003 -17.196 18.150 Atomic orbital electron populations 1.22982 0.78889 1.04004 1.01324 1.87922 1.21895 1.27683 1.95719 1.21454 0.87164 0.85522 1.03456 1.19860 0.96170 1.02067 0.92078 1.21524 0.91727 0.91957 0.99577 1.20963 0.93157 1.06959 0.87701 1.98383 1.76415 1.96829 1.29999 1.20968 1.01297 0.91681 0.89412 1.30952 1.06606 1.18157 1.19701 1.01700 0.73043 0.73156 0.73750 1.93496 1.43402 1.73971 1.86232 1.93531 1.65748 1.79617 1.58957 1.57288 1.28835 1.32377 1.63993 1.21460 0.83762 1.00527 0.98995 1.18511 0.87313 0.89520 0.88009 0.95129 1.21941 1.00742 0.99262 0.97727 1.21600 0.99548 1.33763 1.02925 0.92397 1.25579 0.95505 0.95788 1.01025 1.69949 1.10537 1.38257 1.36340 0.85689 0.78605 0.78172 0.79644 1.19195 1.20720 1.20517 1.21061 0.91968 0.89824 0.99908 0.88589 0.93393 0.91980 0.91258 0.88745 0.80932 0.82369 0.93267 0.89963 0.90013 0.94862 0.91085 0.93708 0.92600 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -9.20 10.69 -148.98 -1.59 -10.80 16 3 C 0.10 1.98 6.06 71.24 0.43 2.41 16 4 C -0.10 -2.45 5.51 -19.87 -0.11 -2.56 16 5 C -0.03 -0.61 9.49 22.29 0.21 -0.40 16 6 C -0.06 -1.39 6.32 22.32 0.14 -1.25 16 7 Cl -0.05 -0.88 28.96 -2.72 -0.08 -0.96 16 8 C -0.01 -0.37 9.31 22.29 0.21 -0.17 16 9 C -0.67 -21.48 5.97 22.27 0.13 -21.35 16 10 S 2.69 106.40 5.64 -56.49 -0.32 106.08 16 11 O -0.98 -39.48 16.36 -128.00 -2.09 -41.57 16 12 O -0.99 -46.57 15.84 -128.00 -2.03 -48.59 16 13 N -0.98 -40.02 3.06 -520.46 -1.59 -41.62 16 14 C 0.10 3.27 9.53 127.77 1.22 4.49 16 15 C 0.27 12.99 2.63 44.25 0.12 13.11 16 16 H 0.03 1.66 6.91 -2.39 -0.02 1.64 16 17 C -0.14 -5.98 8.95 71.98 0.64 -5.34 16 18 C -0.54 -28.63 8.37 25.60 0.21 -28.42 16 19 H 0.06 3.06 7.65 -2.91 -0.02 3.03 16 20 C 0.02 1.13 5.30 84.65 0.45 1.58 16 21 N -0.91 -49.93 11.30 21.45 0.24 -49.69 16 22 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 C -0.01 -0.25 9.18 22.27 0.20 -0.04 16 27 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 31 H 0.09 1.26 8.08 -2.39 -0.02 1.24 16 32 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.16 3.93 7.62 -2.91 -0.02 3.91 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 2.20 7.79 -2.39 -0.02 2.18 16 36 H 0.08 2.61 6.43 -2.38 -0.02 2.59 16 37 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 3.47 6.05 -2.39 -0.01 3.46 16 39 H 0.04 1.82 6.66 -2.39 -0.02 1.81 16 40 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 41 H 0.14 4.48 7.61 -2.91 -0.02 4.46 16 Total: -1.00 -67.33 370.28 0.72 -66.61 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.04 Total: 12.27 kcal Atomic # 6 Polarization: -41.46 SS G_CDS: 5.11 Total: -36.35 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -1.35 Total: -91.31 kcal Atomic # 8 Polarization: -95.25 SS G_CDS: -5.71 Total: -100.96 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 106.40 SS G_CDS: -0.32 Total: 106.08 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -67.33 0.72 -66.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289821747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.247 kcal (2) G-P(sol) polarization free energy of solvation -67.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds