Wall clock time and date at job start Wed Apr 1 2020 04:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35928 * 116.99512 * 2 1 4 4 C 1.38703 * 120.06520 * 359.73425 * 3 2 1 5 5 C 1.38148 * 119.96058 * 179.72107 * 4 3 2 6 6 C 1.50704 * 119.96366 * 180.29398 * 5 4 3 7 7 C 1.53003 * 109.47117 * 270.25205 * 6 5 4 8 8 N 1.46494 * 109.47165 * 179.97438 * 7 6 5 9 9 S 1.65596 * 119.99903 * 164.99936 * 8 7 6 10 10 O 1.42105 * 104.27926 * 181.07410 * 9 8 7 11 11 O 1.42108 * 104.27931 * 308.93082 * 9 8 7 12 12 C 1.81394 * 104.45189 * 65.00283 * 9 8 7 13 13 C 1.53001 * 109.47538 * 180.02562 * 12 9 8 14 14 C 1.50701 * 109.47148 * 179.97438 * 13 12 9 15 15 H 1.08003 * 119.99906 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99792 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00265 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00030 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47024 * 90.00086 * 18 16 14 20 20 H 1.48500 * 109.47249 * 210.00220 * 18 16 14 21 21 H 1.48500 * 109.46980 * 330.00087 * 18 16 14 22 22 C 1.38275 * 120.07412 * 0.54873 * 5 4 3 23 23 C 1.38242 * 120.12326 * 359.72092 * 22 5 4 24 24 C 1.38261 * 120.03816 * 0.02562 * 23 22 5 25 25 Cl 1.73600 * 120.03770 * 179.97438 * 24 23 22 26 26 H 1.09002 * 109.47382 * 59.99664 * 1 2 3 27 27 H 1.09001 * 109.46938 * 299.99651 * 1 2 3 28 28 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.01603 * 359.96385 * 4 3 2 30 30 H 1.08999 * 109.47009 * 30.25261 * 6 5 4 31 31 H 1.09003 * 109.47041 * 150.25267 * 6 5 4 32 32 H 1.09003 * 109.46763 * 300.00502 * 7 6 5 33 33 H 1.09006 * 109.46663 * 59.99505 * 7 6 5 34 34 H 0.97001 * 120.00187 * 345.00759 * 8 7 6 35 35 H 1.09007 * 109.47086 * 300.00243 * 12 9 8 36 36 H 1.09000 * 109.47222 * 59.99836 * 12 9 8 37 37 H 1.09002 * 109.46428 * 299.99663 * 13 12 9 38 38 H 1.08991 * 109.47219 * 59.99874 * 13 12 9 39 39 H 0.97002 * 120.00353 * 179.97438 * 17 16 14 40 40 H 1.08004 * 119.93975 * 179.70344 * 22 5 4 41 41 H 1.08002 * 119.98526 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 1.2918 2.3752 -0.0056 5 6 1.9211 3.6051 0.0003 6 6 1.1017 4.8698 0.0009 7 6 0.8243 5.2986 -1.4414 8 7 0.0273 6.5277 -1.4408 9 16 -0.1116 7.4251 -2.8255 10 8 -0.9185 8.5318 -2.4465 11 8 1.2289 7.6103 -3.2592 12 6 -1.0094 6.3471 -3.9754 13 6 -1.2023 7.0719 -5.3090 14 6 -1.9476 6.1760 -6.2645 15 1 -2.2535 5.1886 -5.9517 16 6 -2.2398 6.6174 -7.5375 17 7 -1.8678 7.8200 -7.9183 18 14 -3.1644 5.5072 -8.7217 19 1 -4.6246 5.7346 -8.5758 20 1 -2.7520 5.8164 -10.1144 21 1 -2.8514 4.0880 -8.4164 22 6 3.3020 3.6768 0.0002 23 6 4.0569 2.5188 0.0001 24 6 3.4322 1.2853 -0.0004 25 17 4.3802 -0.1689 -0.0012 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2132 2.3201 -0.0105 30 1 0.1573 4.6906 0.5147 31 1 1.6511 5.6584 0.5151 32 1 1.7689 5.4777 -1.9552 33 1 0.2750 4.5099 -1.9556 34 1 -0.4190 6.8160 -0.6292 35 1 -0.4378 5.4334 -4.1383 36 1 -1.9827 6.0964 -3.5537 37 1 -1.7738 7.9858 -5.1464 38 1 -0.2289 7.3223 -5.7306 39 1 -2.0730 8.1303 -8.8141 40 1 3.7917 4.6395 -0.0001 41 1 5.1354 2.5774 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294428035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:24 Heat of formation + Delta-G solvation = -134.151514 kcal Electronic energy + Delta-G solvation = -25127.376581 eV Core-core repulsion = 21159.073636 eV Total energy + Delta-G solvation = -3968.302945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24348 -38.86565 -38.12988 -37.56386 -36.99697 -36.58960 -35.87634 -33.20119 -33.10274 -31.22018 -29.31911 -27.88340 -27.57342 -24.51159 -23.58860 -23.33727 -22.20201 -20.31638 -19.16370 -18.80056 -18.15573 -17.57916 -17.41575 -17.14877 -17.00565 -16.73701 -16.51720 -16.03048 -15.62473 -15.24545 -15.07009 -14.70605 -14.64834 -14.44284 -14.23476 -13.71354 -13.49016 -13.19341 -13.13018 -13.08354 -12.98946 -12.92170 -12.78372 -12.74139 -12.37864 -12.25661 -12.21952 -12.11283 -12.00651 -11.81269 -11.76894 -11.70497 -11.15118 -10.63949 -10.32561 -9.80475 -9.15776 -8.25418 -6.39195 -0.64652 0.09158 0.33543 1.21466 1.41283 1.42872 1.53869 1.89383 2.28499 2.38380 2.57448 2.85073 3.08292 3.31339 3.66554 3.76566 3.95585 4.05286 4.08965 4.17911 4.24745 4.26495 4.41115 4.42052 4.45928 4.59904 4.65920 4.76653 4.77373 4.81070 4.95543 5.09102 5.20844 5.21997 5.30035 5.31182 5.55424 5.67922 5.69560 6.07475 6.20219 6.29427 6.74987 7.31104 8.86844 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010804 B = 0.002460 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.114121 B =11380.334243 C =12870.991552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.124 3.876 4 C -0.193 4.193 5 C -0.039 4.039 6 C -0.081 4.081 7 C 0.108 3.892 8 N -1.105 6.105 9 S 2.623 3.377 10 O -0.999 6.999 11 O -0.998 6.998 12 C -0.590 4.590 13 C 0.019 3.981 14 C -0.538 4.538 15 H 0.076 0.924 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.972 3.028 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.257 1.257 22 C -0.144 4.144 23 C -0.075 4.075 24 C -0.093 4.093 25 Cl -0.071 7.071 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.159 0.841 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.428 0.572 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.006 0.994 38 H 0.006 0.994 39 H 0.267 0.733 40 H 0.152 0.848 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.807 -15.429 22.022 27.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.078 3.922 4 C -0.212 4.212 5 C -0.040 4.040 6 C -0.119 4.119 7 C -0.017 4.017 8 N -0.868 5.868 9 S 2.719 3.281 10 O -0.989 6.989 11 O -0.988 6.988 12 C -0.722 4.722 13 C -0.020 4.020 14 C -0.577 4.577 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.796 3.204 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.181 1.181 22 C -0.162 4.162 23 C -0.093 4.093 24 C -0.121 4.121 25 Cl -0.042 7.042 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.134 0.866 29 H 0.176 0.824 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.265 0.735 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.169 0.831 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.407 -14.811 21.626 27.238 hybrid contribution -0.865 -0.662 -0.778 1.339 sum 6.542 -15.473 20.848 26.774 Atomic orbital electron populations 1.23396 0.76123 1.05696 1.02588 1.86139 1.23594 1.25996 1.88255 1.18878 0.90658 0.85845 0.96851 1.21362 1.01411 0.90543 1.07860 1.19779 0.93961 0.94354 0.95887 1.20798 1.01370 0.94303 0.95464 1.21513 0.95719 0.85376 0.99139 1.55220 1.65128 1.39047 1.27395 1.04334 0.74135 0.74800 0.74783 1.93508 1.72013 1.51377 1.82052 1.93504 1.36863 1.85560 1.82874 1.30347 1.15068 1.15215 1.11526 1.18821 0.96864 0.95598 0.90713 1.21537 1.36605 1.01837 0.97723 0.90554 1.26109 0.96858 0.96755 1.00554 1.70100 1.47699 1.19534 1.20133 0.85335 0.78595 0.79168 0.77298 1.19606 1.20994 1.18102 1.21271 0.93321 0.98951 1.02688 1.21142 1.01569 0.89389 0.97221 1.20479 0.89214 0.89049 1.13328 1.98353 1.71729 1.36912 1.97233 0.91618 0.91050 0.86575 0.82358 0.87630 0.88451 0.90878 0.90007 0.73541 0.84108 0.83746 0.97536 0.97539 0.92432 0.83072 0.82913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.87 9.96 -92.74 -0.92 -6.79 16 3 C 0.12 2.27 6.68 22.52 0.15 2.42 16 4 C -0.19 -2.74 8.69 22.36 0.19 -2.55 16 5 C -0.04 -0.53 5.13 -19.88 -0.10 -0.63 16 6 C -0.08 -0.89 5.48 29.85 0.16 -0.72 16 7 C 0.11 1.79 6.11 86.38 0.53 2.32 16 8 N -1.11 -22.17 5.88 -187.49 -1.10 -23.27 16 9 S 2.62 86.18 5.46 -56.49 -0.31 85.87 16 10 O -1.00 -39.41 18.08 -127.65 -2.31 -41.72 16 11 O -1.00 -39.64 17.50 -127.65 -2.23 -41.88 16 12 C -0.59 -20.86 6.01 71.98 0.43 -20.43 16 13 C 0.02 0.96 4.98 29.85 0.15 1.11 16 14 C -0.54 -29.27 9.11 25.60 0.23 -29.04 16 15 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 16 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 17 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 18 Si 0.97 42.75 29.54 68.60 2.03 44.78 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 22 C -0.14 -2.05 9.70 22.28 0.22 -1.83 16 23 C -0.07 -1.18 9.83 22.28 0.22 -0.96 16 24 C -0.09 -1.79 6.33 22.41 0.14 -1.65 16 25 Cl -0.07 -1.40 28.50 -2.72 -0.08 -1.48 16 26 H 0.07 0.57 7.65 -2.39 -0.02 0.55 16 27 H 0.07 0.49 7.67 -2.39 -0.02 0.47 16 28 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.16 1.50 6.30 -2.91 -0.02 1.48 16 30 H 0.11 0.73 8.09 -2.39 -0.02 0.71 16 31 H 0.10 0.92 8.08 -2.39 -0.02 0.90 16 32 H 0.07 1.42 7.70 -2.39 -0.02 1.40 16 33 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.43 6.33 8.62 -96.75 -0.83 5.50 16 35 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 36 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 37 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -79.24 377.98 -0.52 -79.77 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.22 Total: 11.47 kcal Atomic # 6 Polarization: -54.38 SS G_CDS: 3.90 Total: -50.48 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -0.82 Total: -79.54 kcal Atomic # 8 Polarization: -84.92 SS G_CDS: -5.46 Total: -90.39 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 86.18 SS G_CDS: -0.31 Total: 85.87 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -79.24 -0.52 -79.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294428035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.385 kcal (2) G-P(sol) polarization free energy of solvation -79.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds