Wall clock time and date at job start Wed Apr 1 2020 04:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99939 * 2 1 4 4 H 1.08997 * 109.46843 * 177.82436 * 3 2 1 5 5 C 1.53004 * 109.47078 * 297.82441 * 3 2 1 6 6 O 1.42901 * 109.47149 * 65.90367 * 5 3 2 7 7 C 1.50693 * 109.47231 * 57.82339 * 3 2 1 8 8 C 1.38247 * 119.99120 * 307.51999 * 7 3 2 9 9 C 1.38208 * 120.01612 * 179.72338 * 8 7 3 10 10 C 1.38349 * 119.98722 * 0.54918 * 9 8 7 11 11 Cl 1.73598 * 120.01585 * 179.74616 * 10 9 8 12 12 C 1.38357 * 119.97433 * 359.72330 * 10 9 8 13 13 C 1.38212 * 119.98128 * 0.02562 * 12 10 9 14 14 S 1.65598 * 119.99853 * 179.97438 * 2 1 3 15 15 O 1.42106 * 104.27558 * 333.92525 * 14 2 1 16 16 O 1.42104 * 104.27318 * 206.07323 * 14 2 1 17 17 C 1.81400 * 104.45118 * 90.00050 * 14 2 1 18 18 C 1.53002 * 109.47045 * 179.97438 * 17 14 2 19 19 C 1.50693 * 109.47095 * 179.97438 * 18 17 14 20 20 H 1.08007 * 119.99904 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99965 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00010 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99712 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47215 * 90.00382 * 23 21 19 25 25 H 1.48507 * 109.46687 * 209.99609 * 23 21 19 26 26 H 1.48491 * 109.47287 * 329.99803 * 23 21 19 27 27 H 1.08996 * 109.47020 * 275.31262 * 1 2 3 28 28 H 1.09006 * 109.46806 * 35.31234 * 1 2 3 29 29 H 1.09005 * 109.47005 * 155.30760 * 1 2 3 30 30 H 1.08996 * 109.47283 * 185.90276 * 5 3 2 31 31 H 1.09000 * 109.47197 * 305.90653 * 5 3 2 32 32 H 0.96693 * 113.99931 * 179.97438 * 6 5 3 33 33 H 1.07999 * 119.98676 * 0.02562 * 8 7 3 34 34 H 1.08002 * 120.00857 * 180.26602 * 9 8 7 35 35 H 1.07997 * 120.00968 * 179.97438 * 12 10 9 36 36 H 1.08000 * 119.99232 * 180.02562 * 13 12 10 37 37 H 1.08998 * 109.46821 * 299.99960 * 17 14 2 38 38 H 1.08996 * 109.46597 * 60.00019 * 17 14 2 39 39 H 1.09005 * 109.46813 * 300.00064 * 18 17 14 40 40 H 1.09006 * 109.47135 * 60.00077 * 18 17 14 41 41 H 0.96999 * 119.99909 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2685 1.0699 0.0390 5 6 1.8694 2.0471 -1.2758 6 8 0.4919 2.4269 -1.2610 7 6 1.7935 2.0820 1.2025 8 6 0.4562 2.3262 1.4540 9 6 0.0848 3.0673 2.5599 10 6 1.0521 3.5744 3.4092 11 17 0.5866 4.5109 4.7948 12 6 2.3906 3.3345 3.1539 13 6 2.7605 2.5889 2.0505 14 16 2.2930 -1.4341 0.0006 15 8 1.3969 -2.3558 0.6064 16 8 3.5395 -1.1188 0.6058 17 6 2.5194 -1.8270 -1.7558 18 6 3.2820 -3.1467 -1.8891 19 6 3.4695 -3.4733 -3.3482 20 1 3.0837 -2.8061 -4.1048 21 6 4.1344 -4.6234 -3.7172 22 7 4.6046 -5.4355 -2.7959 23 14 4.3674 -5.0279 -5.5260 24 1 5.6412 -4.4342 -6.0059 25 1 4.4112 -6.5019 -5.7019 26 1 3.2354 -4.4694 -6.3080 27 1 -0.3633 0.0951 1.0232 28 1 -0.3633 0.8386 -0.5941 29 1 -0.3633 -0.9337 -0.4293 30 1 2.4920 2.9402 -1.3267 31 1 2.0637 1.4186 -2.1449 32 1 0.2130 2.9253 -2.0412 33 1 -0.2986 1.9337 0.7888 34 1 -0.9602 3.2543 2.7586 35 1 3.1461 3.7305 3.8163 36 1 3.8052 2.4012 1.8514 37 1 1.5452 -1.9198 -2.2358 38 1 3.0867 -1.0298 -2.2361 39 1 4.2562 -3.0534 -1.4091 40 1 2.7150 -3.9441 -1.4085 41 1 5.0728 -6.2444 -3.0555 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295856668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:46 Heat of formation + Delta-G solvation = -96.454767 kcal Electronic energy + Delta-G solvation = -26539.373319 eV Core-core repulsion = 22572.705028 eV Total energy + Delta-G solvation = -3966.668291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.06695 -37.80990 -36.69631 -36.52815 -35.57593 -35.26244 -33.93150 -31.76658 -31.20757 -31.03008 -28.88243 -26.00623 -25.62207 -23.44015 -22.89444 -21.67101 -20.95128 -18.68893 -18.05526 -17.43695 -16.96843 -16.56475 -16.49034 -15.77924 -15.36902 -15.26158 -14.93329 -14.66500 -14.58391 -13.87330 -13.76572 -13.54542 -13.40923 -13.07188 -12.84140 -12.55488 -12.47405 -12.17262 -11.80618 -11.79733 -11.69273 -11.62775 -11.52841 -11.28215 -11.20634 -11.11913 -11.00212 -10.85676 -10.45044 -10.42969 -10.09018 -9.78058 -9.35919 -9.14612 -8.81122 -8.74197 -8.54099 -6.15995 -4.21952 0.64306 1.00020 1.18328 1.94683 2.94245 3.22871 3.29399 3.31809 3.48956 3.96899 4.25750 4.35574 4.37609 4.51960 4.63061 4.75221 4.80466 4.93315 5.11628 5.19079 5.21268 5.28465 5.34272 5.40958 5.54643 5.58663 5.64300 5.71785 5.84087 5.97588 6.06540 6.09166 6.11527 6.43074 6.44224 6.60654 6.66848 7.25646 7.31534 7.35584 7.76531 8.13287 8.81376 9.42994 10.95013 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.002539 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.331866 B =11024.891088 C =11365.269476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.997 5.997 3 C 0.188 3.812 4 H 0.123 0.877 5 C 0.068 3.932 6 O -0.561 6.561 7 C -0.083 4.083 8 C -0.078 4.078 9 C -0.121 4.121 10 C -0.034 4.034 11 Cl -0.080 7.080 12 C -0.117 4.117 13 C -0.096 4.096 14 S 2.585 3.415 15 O -0.959 6.959 16 O -0.964 6.964 17 C -0.588 4.588 18 C 0.028 3.972 19 C -0.520 4.520 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.052 0.948 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.376 0.624 33 H 0.154 0.846 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.570 21.314 6.458 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.832 5.832 3 C 0.081 3.919 4 H 0.140 0.860 5 C -0.012 4.012 6 O -0.367 6.367 7 C -0.085 4.085 8 C -0.096 4.096 9 C -0.140 4.140 10 C -0.061 4.061 11 Cl -0.051 7.051 12 C -0.136 4.136 13 C -0.115 4.115 14 S 2.684 3.316 15 O -0.950 6.950 16 O -0.955 6.955 17 C -0.721 4.721 18 C -0.011 4.011 19 C -0.560 4.560 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.071 0.929 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.224 0.776 33 H 0.171 0.829 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.265 20.443 7.999 23.456 hybrid contribution 0.090 0.248 -1.932 1.950 sum -8.174 20.690 6.067 23.059 Atomic orbital electron populations 1.21968 0.78701 1.03934 1.02225 1.57731 1.15350 1.19994 1.90100 1.19918 0.97406 0.82985 0.91555 0.85981 1.22640 0.83250 0.98066 0.97199 1.86458 1.25847 1.76937 1.47472 1.20019 0.93915 0.98025 0.96546 1.21574 0.96689 0.95512 0.95833 1.21095 0.99044 0.98969 0.94869 1.20990 0.94638 0.99241 0.91184 1.98360 1.92632 1.71884 1.42261 1.20974 0.94158 1.00044 0.98433 1.21112 0.99983 0.96724 0.93658 1.05933 0.73651 0.72672 0.79364 1.93548 1.64678 1.61790 1.74964 1.93524 1.43999 1.82777 1.75152 1.30500 1.10233 1.10627 1.20781 1.18968 0.94938 0.87179 1.00025 1.20983 1.37164 1.07105 0.90742 0.92067 1.25074 0.95311 0.96086 0.98026 1.69952 1.37124 1.12751 1.32949 0.86469 0.78599 0.77683 0.84523 1.20454 1.20975 1.19774 0.92926 0.88068 0.91175 0.92312 0.92062 0.77630 0.82880 0.85187 0.85037 0.84733 0.86188 0.86389 0.94861 0.94870 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 8.07 59.85 0.48 1.36 16 2 N -1.00 -13.21 2.99 -115.85 -0.35 -13.55 16 3 C 0.19 2.12 2.89 -69.08 -0.20 1.92 16 4 H 0.12 1.39 6.59 -51.93 -0.34 1.05 16 5 C 0.07 0.55 6.80 37.16 0.25 0.80 16 6 O -0.56 -3.93 8.49 -35.23 -0.30 -4.23 16 7 C -0.08 -0.94 4.93 -104.62 -0.52 -1.46 16 8 C -0.08 -0.83 7.09 -39.59 -0.28 -1.11 16 9 C -0.12 -1.24 9.83 -39.55 -0.39 -1.63 16 10 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 11 Cl -0.08 -0.78 28.96 -51.86 -1.50 -2.29 16 12 C -0.12 -1.21 9.83 -39.55 -0.39 -1.60 16 13 C -0.10 -1.04 9.67 -39.59 -0.38 -1.42 16 14 S 2.58 45.89 5.36 -107.50 -0.58 45.32 16 15 O -0.96 -20.03 16.98 -57.54 -0.98 -21.01 16 16 O -0.96 -19.27 16.55 -57.54 -0.95 -20.22 16 17 C -0.59 -10.83 6.12 37.16 0.23 -10.60 16 18 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 19 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 20 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 23 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H 0.05 0.60 6.81 -51.93 -0.35 0.25 16 28 H 0.10 0.93 4.30 -51.93 -0.22 0.71 16 29 H 0.07 0.81 7.60 -51.93 -0.39 0.42 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.38 1.19 9.12 45.56 0.42 1.60 16 33 H 0.15 1.48 3.89 -52.49 -0.20 1.27 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.13 1.26 7.96 -52.49 -0.42 0.84 16 37 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 38 H 0.12 1.89 8.14 -51.93 -0.42 1.46 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -35.09 361.86 -9.92 -45.01 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.44 Total: 1.83 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -1.99 Total: -26.68 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.39 Total: -39.00 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -2.23 Total: -45.46 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 45.89 SS G_CDS: -0.58 Total: 45.32 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.09 -9.92 -45.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295856668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.444 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds