Wall clock time and date at job start Wed Apr 1 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99939 * 2 1 4 4 H 1.08997 * 109.46843 * 177.82436 * 3 2 1 5 5 C 1.53004 * 109.47078 * 297.82441 * 3 2 1 6 6 O 1.42901 * 109.47149 * 65.90367 * 5 3 2 7 7 C 1.50693 * 109.47231 * 57.82339 * 3 2 1 8 8 C 1.38247 * 119.99120 * 307.51999 * 7 3 2 9 9 C 1.38208 * 120.01612 * 179.72338 * 8 7 3 10 10 C 1.38349 * 119.98722 * 0.54918 * 9 8 7 11 11 Cl 1.73598 * 120.01585 * 179.74616 * 10 9 8 12 12 C 1.38357 * 119.97433 * 359.72330 * 10 9 8 13 13 C 1.38212 * 119.98128 * 0.02562 * 12 10 9 14 14 S 1.65598 * 119.99853 * 179.97438 * 2 1 3 15 15 O 1.42106 * 104.27558 * 333.92525 * 14 2 1 16 16 O 1.42104 * 104.27318 * 206.07323 * 14 2 1 17 17 C 1.81400 * 104.45118 * 90.00050 * 14 2 1 18 18 C 1.53002 * 109.47045 * 179.97438 * 17 14 2 19 19 C 1.50693 * 109.47095 * 179.97438 * 18 17 14 20 20 H 1.08007 * 119.99904 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99965 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00010 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99712 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47215 * 90.00382 * 23 21 19 25 25 H 1.48507 * 109.46687 * 209.99609 * 23 21 19 26 26 H 1.48491 * 109.47287 * 329.99803 * 23 21 19 27 27 H 1.08996 * 109.47020 * 275.31262 * 1 2 3 28 28 H 1.09006 * 109.46806 * 35.31234 * 1 2 3 29 29 H 1.09005 * 109.47005 * 155.30760 * 1 2 3 30 30 H 1.08996 * 109.47283 * 185.90276 * 5 3 2 31 31 H 1.09000 * 109.47197 * 305.90653 * 5 3 2 32 32 H 0.96693 * 113.99931 * 179.97438 * 6 5 3 33 33 H 1.07999 * 119.98676 * 0.02562 * 8 7 3 34 34 H 1.08002 * 120.00857 * 180.26602 * 9 8 7 35 35 H 1.07997 * 120.00968 * 179.97438 * 12 10 9 36 36 H 1.08000 * 119.99232 * 180.02562 * 13 12 10 37 37 H 1.08998 * 109.46821 * 299.99960 * 17 14 2 38 38 H 1.08996 * 109.46597 * 60.00019 * 17 14 2 39 39 H 1.09005 * 109.46813 * 300.00064 * 18 17 14 40 40 H 1.09006 * 109.47135 * 60.00077 * 18 17 14 41 41 H 0.96999 * 119.99909 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2685 1.0699 0.0390 5 6 1.8694 2.0471 -1.2758 6 8 0.4919 2.4269 -1.2610 7 6 1.7935 2.0820 1.2025 8 6 0.4562 2.3262 1.4540 9 6 0.0848 3.0673 2.5599 10 6 1.0521 3.5744 3.4092 11 17 0.5866 4.5109 4.7948 12 6 2.3906 3.3345 3.1539 13 6 2.7605 2.5889 2.0505 14 16 2.2930 -1.4341 0.0006 15 8 1.3969 -2.3558 0.6064 16 8 3.5395 -1.1188 0.6058 17 6 2.5194 -1.8270 -1.7558 18 6 3.2820 -3.1467 -1.8891 19 6 3.4695 -3.4733 -3.3482 20 1 3.0837 -2.8061 -4.1048 21 6 4.1344 -4.6234 -3.7172 22 7 4.6046 -5.4355 -2.7959 23 14 4.3674 -5.0279 -5.5260 24 1 5.6412 -4.4342 -6.0059 25 1 4.4112 -6.5019 -5.7019 26 1 3.2354 -4.4694 -6.3080 27 1 -0.3633 0.0951 1.0232 28 1 -0.3633 0.8386 -0.5941 29 1 -0.3633 -0.9337 -0.4293 30 1 2.4920 2.9402 -1.3267 31 1 2.0637 1.4186 -2.1449 32 1 0.2130 2.9253 -2.0412 33 1 -0.2986 1.9337 0.7888 34 1 -0.9602 3.2543 2.7586 35 1 3.1461 3.7305 3.8163 36 1 3.8052 2.4012 1.8514 37 1 1.5452 -1.9198 -2.2358 38 1 3.0867 -1.0298 -2.2361 39 1 4.2562 -3.0534 -1.4091 40 1 2.7150 -3.9441 -1.4085 41 1 5.0728 -6.2444 -3.0555 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295856668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:45 Heat of formation + Delta-G solvation = -121.824351 kcal Electronic energy + Delta-G solvation = -26540.473427 eV Core-core repulsion = 22572.705028 eV Total energy + Delta-G solvation = -3967.768399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86188 -38.56391 -38.21981 -37.26724 -37.03261 -36.13614 -35.88416 -33.12671 -32.59428 -31.84521 -29.65669 -27.60549 -26.85509 -24.31879 -23.68452 -23.42150 -21.87633 -19.93050 -19.21211 -18.60220 -18.14412 -17.70540 -17.51018 -17.16633 -16.54142 -16.52293 -16.17562 -15.85346 -15.54841 -15.15795 -14.64230 -14.50288 -14.45834 -14.31804 -13.93203 -13.72803 -13.59739 -13.47607 -13.37287 -13.19495 -12.92692 -12.87066 -12.78268 -12.56616 -12.35066 -12.25312 -12.22507 -12.17874 -12.05761 -11.72899 -11.62916 -11.14357 -10.65194 -10.63691 -9.98379 -9.86111 -9.54659 -8.25628 -6.39828 -0.75726 0.15857 0.39745 1.16321 1.41667 1.43423 1.54466 1.72373 2.38416 2.67596 2.85816 3.07929 3.15699 3.39569 3.56754 3.83989 3.88203 4.01310 4.04533 4.08640 4.18577 4.44306 4.47996 4.55664 4.62740 4.69150 4.76747 4.81083 4.86124 5.00986 5.11032 5.24402 5.26145 5.27834 5.29173 5.32663 5.56797 5.68577 5.69326 5.88208 6.05986 6.74181 7.04832 7.30589 8.86690 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.002539 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.331866 B =11024.891088 C =11365.269476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.985 5.985 3 C 0.177 3.823 4 H 0.116 0.884 5 C 0.074 3.926 6 O -0.569 6.569 7 C -0.095 4.095 8 C -0.082 4.082 9 C -0.125 4.125 10 C -0.044 4.044 11 Cl -0.076 7.076 12 C -0.123 4.123 13 C -0.108 4.108 14 S 2.603 3.397 15 O -0.996 6.996 16 O -0.992 6.992 17 C -0.582 4.582 18 C 0.020 3.980 19 C -0.536 4.536 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.936 5.936 23 Si 0.974 3.026 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.256 1.256 27 H 0.052 0.948 28 H 0.130 0.870 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.396 0.604 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.006 0.994 40 H 0.003 0.997 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 23.435 4.760 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.822 5.822 3 C 0.071 3.929 4 H 0.134 0.866 5 C -0.005 4.005 6 O -0.379 6.379 7 C -0.097 4.097 8 C -0.100 4.100 9 C -0.144 4.144 10 C -0.071 4.071 11 Cl -0.047 7.047 12 C -0.141 4.141 13 C -0.127 4.127 14 S 2.702 3.298 15 O -0.986 6.986 16 O -0.982 6.982 17 C -0.715 4.715 18 C -0.019 4.019 19 C -0.575 4.575 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.575 5.575 23 Si 0.798 3.202 24 H -0.195 1.195 25 H -0.211 1.211 26 H -0.180 1.180 27 H 0.070 0.930 28 H 0.147 0.853 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.247 0.753 33 H 0.181 0.819 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.025 0.975 40 H 0.021 0.979 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.329 22.584 6.282 25.229 hybrid contribution 0.370 -0.307 -1.314 1.399 sum -8.959 22.277 4.969 24.519 Atomic orbital electron populations 1.22222 0.77257 1.05067 1.02883 1.57324 1.15981 1.19115 1.89827 1.20213 0.96970 0.82140 0.93545 0.86584 1.22507 0.84225 0.98497 0.95275 1.86357 1.25097 1.77406 1.48994 1.20118 0.94419 0.98412 0.96756 1.21708 0.96627 0.95512 0.96112 1.21318 0.99849 0.98593 0.94609 1.21156 0.94939 0.99475 0.91510 1.98360 1.92587 1.71740 1.42004 1.21173 0.94576 0.99881 0.98517 1.21313 1.00548 0.96969 0.93821 1.05051 0.72927 0.73145 0.78632 1.93494 1.65491 1.64008 1.75634 1.93480 1.45689 1.83409 1.75598 1.30362 1.10837 1.07882 1.22391 1.18824 0.94143 0.89903 0.99001 1.21509 1.36642 1.07381 0.91969 0.90362 1.26137 0.95006 0.96073 1.03145 1.70107 1.38365 1.13456 1.35599 0.85310 0.79226 0.77269 0.78438 1.19510 1.21079 1.18006 0.92951 0.85268 0.91397 0.90429 0.91361 0.75286 0.81939 0.83660 0.83751 0.83927 0.83992 0.83579 0.97546 0.97905 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 8.07 127.77 1.03 2.49 16 2 N -0.98 -24.75 2.99 -520.43 -1.56 -26.31 16 3 C 0.18 3.68 2.89 44.24 0.13 3.81 16 4 H 0.12 2.54 6.59 -2.39 -0.02 2.52 16 5 C 0.07 0.98 6.80 71.98 0.49 1.47 16 6 O -0.57 -5.98 8.49 -148.98 -1.26 -7.24 16 7 C -0.10 -2.00 4.93 -19.86 -0.10 -2.10 16 8 C -0.08 -1.58 7.09 22.26 0.16 -1.42 16 9 C -0.13 -2.35 9.83 22.29 0.22 -2.13 16 10 C -0.04 -0.88 6.32 22.32 0.14 -0.73 16 11 Cl -0.08 -1.38 28.96 -2.72 -0.08 -1.46 16 12 C -0.12 -2.40 9.83 22.29 0.22 -2.18 16 13 C -0.11 -2.21 9.67 22.26 0.22 -2.00 16 14 S 2.60 92.77 5.36 -56.49 -0.30 92.47 16 15 O -1.00 -42.44 16.98 -127.65 -2.17 -44.61 16 16 O -0.99 -40.36 16.55 -127.65 -2.11 -42.47 16 17 C -0.58 -21.05 6.12 71.98 0.44 -20.61 16 18 C 0.02 1.04 4.98 29.85 0.15 1.19 16 19 C -0.54 -28.98 9.11 25.60 0.23 -28.75 16 20 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 21 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 22 N -0.94 -56.53 13.29 21.45 0.28 -56.25 16 23 Si 0.97 42.40 29.54 68.60 2.03 44.42 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 26 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 27 H 0.05 1.11 6.81 -2.39 -0.02 1.10 16 28 H 0.13 1.99 4.30 -2.38 -0.01 1.98 16 29 H 0.07 1.47 7.60 -2.38 -0.02 1.45 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.40 0.94 9.12 -74.06 -0.68 0.26 16 33 H 0.16 2.73 3.89 -2.91 -0.01 2.71 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.14 2.57 7.96 -2.91 -0.02 2.54 16 37 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 38 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 39 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 40 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 41 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -77.13 361.86 -0.99 -78.12 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.39 Total: 14.13 kcal Atomic # 6 Polarization: -54.58 SS G_CDS: 3.79 Total: -50.80 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -1.27 Total: -82.56 kcal Atomic # 8 Polarization: -88.78 SS G_CDS: -5.54 Total: -94.32 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 92.77 SS G_CDS: -0.30 Total: 92.47 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -77.13 -0.99 -78.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295856668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.702 kcal (2) G-P(sol) polarization free energy of solvation -77.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds