Wall clock time and date at job start Wed Apr 1 2020 04:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35928 * 116.99822 * 2 1 4 4 C 1.38743 * 120.04122 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.95267 * 179.97438 * 4 3 2 6 6 C 1.38382 * 120.04709 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 119.95949 * 180.02562 * 6 5 4 8 8 C 1.38349 * 120.08327 * 0.02562 * 6 5 4 9 9 C 1.38169 * 120.04074 * 359.70393 * 8 6 5 10 10 C 1.50697 * 120.01780 * 180.29822 * 9 8 6 11 11 S 1.81401 * 109.47302 * 270.24807 * 10 9 8 12 12 O 1.42099 * 110.54096 * 291.62958 * 11 10 9 13 13 O 1.42102 * 110.53946 * 68.37884 * 11 10 9 14 14 N 1.65595 * 104.45102 * 180.02562 * 11 10 9 15 15 C 1.46505 * 120.00173 * 270.00199 * 14 11 10 16 16 C 1.46493 * 120.00217 * 89.99819 * 14 11 10 17 17 H 1.09006 * 109.47338 * 0.02562 * 16 14 11 18 18 C 1.52998 * 109.47748 * 240.00074 * 16 14 11 19 19 C 1.50709 * 109.47201 * 119.99800 * 16 14 11 20 20 H 1.07996 * 119.99434 * 0.02562 * 19 16 14 21 21 C 1.37874 * 120.00138 * 180.02562 * 19 16 14 22 22 N 1.31513 * 120.00065 * 0.02562 * 21 19 16 23 23 Si 1.86806 * 119.99824 * 180.02562 * 21 19 16 24 24 H 1.48493 * 109.46966 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46990 * 120.00062 * 23 21 19 26 26 H 1.48501 * 109.46686 * 240.00121 * 23 21 19 27 27 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47054 * 299.99733 * 1 2 3 29 29 H 1.09000 * 109.47187 * 59.99789 * 1 2 3 30 30 H 1.07998 * 120.02281 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.97737 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.97842 * 179.97438 * 8 6 5 33 33 H 1.08993 * 109.47451 * 30.25348 * 10 9 8 34 34 H 1.09008 * 109.46892 * 150.24954 * 10 9 8 35 35 H 1.09005 * 109.47117 * 89.99501 * 15 14 11 36 36 H 1.08992 * 109.47609 * 210.00034 * 15 14 11 37 37 H 1.09001 * 109.46733 * 330.00516 * 15 14 11 38 38 H 1.09000 * 109.46933 * 59.99935 * 18 16 14 39 39 H 1.09000 * 109.47537 * 180.02562 * 18 16 14 40 40 H 1.08997 * 109.47184 * 299.99957 * 18 16 14 41 41 H 0.97004 * 119.99908 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9202 3.6050 0.0011 6 6 3.3022 3.6764 0.0005 7 17 4.0903 5.2232 0.0019 8 6 4.0565 2.5167 -0.0011 9 6 3.4311 1.2847 0.0040 10 6 4.2533 0.0218 0.0091 11 16 4.5893 -0.4879 -1.6991 12 8 3.3933 -0.9157 -2.3362 13 8 5.4666 0.4341 -2.3312 14 7 5.4882 -1.8704 -1.5487 15 6 6.9494 -1.7902 -1.4793 16 6 4.8224 -3.1737 -1.4848 17 1 3.7434 -3.0342 -1.5514 18 6 5.1678 -3.8587 -0.1610 19 6 5.2890 -4.0330 -2.6317 20 1 6.0097 -3.6468 -3.3372 21 6 4.7957 -5.3119 -2.7801 22 7 3.9177 -5.7818 -1.9212 23 14 5.3746 -6.3771 -4.2013 24 1 6.3573 -5.6209 -5.0184 25 1 6.0156 -7.6064 -3.6694 26 1 4.2115 -6.7508 -5.0455 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2127 2.3199 0.0014 31 1 1.3330 4.5114 0.0019 32 1 5.1350 2.5745 -0.0019 33 1 5.1955 0.2037 0.5259 34 1 3.7039 -0.7674 0.5224 35 1 7.2590 -1.6932 -0.4387 36 1 7.3836 -2.6949 -1.9047 37 1 7.2927 -0.9226 -2.0429 38 1 4.8303 -3.2373 0.6685 39 1 4.6728 -4.8287 -0.1137 40 1 6.2468 -3.9983 -0.0948 41 1 3.5710 -6.6818 -2.0254 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354512997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:09 Heat of formation + Delta-G solvation = -83.992534 kcal Electronic energy + Delta-G solvation = -26999.652721 eV Core-core repulsion = 23033.524833 eV Total energy + Delta-G solvation = -3966.127888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51036 -37.88551 -36.52123 -36.41188 -36.15610 -35.24157 -33.24687 -32.55625 -30.24947 -29.07696 -27.92034 -27.09532 -25.47358 -25.14461 -22.53677 -22.07181 -20.65722 -18.38359 -18.05172 -17.04609 -16.83091 -16.61616 -16.37296 -15.93515 -15.51111 -15.29566 -14.80827 -14.58388 -14.15743 -13.76127 -13.49633 -13.45784 -13.15805 -12.90823 -12.60809 -12.43489 -12.10464 -12.03352 -11.93286 -11.75291 -11.44750 -11.41085 -11.32024 -11.17745 -11.08335 -10.92139 -10.88197 -10.79778 -10.67714 -10.37477 -10.19333 -10.00850 -9.25053 -9.14522 -8.43645 -8.29811 -7.88093 -6.05381 -4.11077 0.56341 0.97074 1.15165 1.96106 3.09737 3.29296 3.30329 3.36244 3.38050 3.43764 4.19536 4.39756 4.41496 4.50581 4.64549 4.77792 4.87184 5.03262 5.09120 5.16391 5.26361 5.28094 5.44665 5.47070 5.68092 5.74540 5.85370 5.90170 5.97341 6.11679 6.30508 6.37014 6.68102 6.78924 6.84464 7.04014 7.13006 7.45587 7.65084 7.81770 8.06621 8.29905 8.91016 9.54072 11.00469 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.003367 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.482534 B = 8312.995993 C = 9220.361185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.296 6.296 3 C 0.150 3.850 4 C -0.198 4.198 5 C -0.065 4.065 6 C -0.073 4.073 7 Cl -0.070 7.070 8 C -0.060 4.060 9 C -0.104 4.104 10 C -0.590 4.590 11 S 2.601 3.399 12 O -0.936 6.936 13 O -0.969 6.969 14 N -0.981 5.981 15 C 0.092 3.908 16 C 0.265 3.735 17 H 0.063 0.937 18 C -0.150 4.150 19 C -0.516 4.516 20 H 0.064 0.936 21 C 0.063 3.937 22 N -0.891 5.891 23 Si 0.897 3.103 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.283 1.283 27 H 0.108 0.892 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.146 0.854 35 H 0.037 0.963 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.009 0.991 39 H 0.094 0.906 40 H 0.034 0.966 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 16.123 8.495 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.208 6.208 3 C 0.102 3.898 4 C -0.217 4.217 5 C -0.084 4.084 6 C -0.100 4.100 7 Cl -0.041 7.041 8 C -0.080 4.080 9 C -0.107 4.107 10 C -0.714 4.714 11 S 2.692 3.308 12 O -0.926 6.926 13 O -0.959 6.959 14 N -0.821 5.821 15 C -0.055 4.055 16 C 0.162 3.838 17 H 0.080 0.920 18 C -0.210 4.210 19 C -0.555 4.555 20 H 0.082 0.918 21 C -0.139 4.139 22 N -0.530 5.530 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.126 0.874 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.165 0.835 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.028 0.972 39 H 0.112 0.888 40 H 0.053 0.947 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.498 16.276 7.746 18.578 hybrid contribution 0.177 -0.528 0.135 0.572 sum -4.321 15.749 7.880 18.133 Atomic orbital electron populations 1.23193 0.77666 1.04972 1.01203 1.86223 1.21968 1.25419 1.87197 1.18959 0.91556 0.85298 0.94001 1.21197 1.00654 0.91213 1.08593 1.20866 0.92304 0.98144 0.97104 1.20649 0.92790 0.86713 1.09817 1.98360 1.80677 1.27836 1.97212 1.20894 1.00942 0.89308 0.96850 1.18292 0.90331 0.93357 1.08713 1.29776 1.08047 1.03689 1.29930 1.05352 0.74636 0.73822 0.76966 1.93597 1.48073 1.80105 1.70864 1.93509 1.65493 1.64803 1.72125 1.57452 1.14681 1.21561 1.88368 1.21366 0.80505 1.03727 0.99864 1.18794 0.93449 0.77194 0.94383 0.91969 1.22158 1.00168 1.02917 0.95732 1.21362 1.25616 0.98051 1.10520 0.91825 1.24901 0.94895 0.97716 0.96406 1.69870 1.29980 1.17253 1.35853 0.86449 0.78658 0.80101 0.82269 1.19699 1.21024 1.20901 0.87383 0.92590 0.92139 0.83907 0.84332 0.83487 0.84548 0.83557 0.94454 0.89628 0.91598 0.97169 0.88801 0.94706 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.34 9.54 -19.51 -0.19 -4.53 16 3 C 0.15 2.10 6.66 -39.23 -0.26 1.84 16 4 C -0.20 -2.17 9.04 -39.44 -0.36 -2.53 16 5 C -0.07 -0.68 9.82 -39.57 -0.39 -1.07 16 6 C -0.07 -0.87 6.32 -39.49 -0.25 -1.12 16 7 Cl -0.07 -0.75 28.95 -51.86 -1.50 -2.25 16 8 C -0.06 -0.80 9.48 -39.57 -0.38 -1.17 16 9 C -0.10 -1.53 5.15 -104.48 -0.54 -2.07 16 10 C -0.59 -8.93 6.08 36.00 0.22 -8.72 16 11 S 2.60 51.55 5.40 -107.50 -0.58 50.97 16 12 O -0.94 -22.02 16.57 -57.54 -0.95 -22.98 16 13 O -0.97 -20.14 16.58 -57.54 -0.95 -21.09 16 14 N -0.98 -20.49 2.99 -115.85 -0.35 -20.84 16 15 C 0.09 1.63 9.64 59.85 0.58 2.21 16 16 C 0.26 6.47 2.57 -69.08 -0.18 6.29 16 17 H 0.06 1.68 6.87 -51.93 -0.36 1.32 16 18 C -0.15 -3.37 8.97 37.16 0.33 -3.04 16 19 C -0.52 -13.93 7.99 -34.44 -0.28 -14.21 16 20 H 0.06 1.72 7.33 -52.49 -0.38 1.33 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 22 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 23 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 27 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 29 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 30 H 0.14 1.14 6.30 -52.49 -0.33 0.80 16 31 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 32 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.14 1.64 8.09 -51.93 -0.42 1.22 16 34 H 0.15 2.19 7.53 -51.92 -0.39 1.80 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.60 7.02 -51.93 -0.36 1.23 16 37 H 0.07 1.10 6.91 -51.93 -0.36 0.75 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 40 H 0.03 0.73 7.67 -51.93 -0.40 0.34 16 41 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 367.00 15.07 5.53 5.53 Total: -1.00 -33.03 367.00 -9.34 -42.37 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.36 Total: 1.45 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -0.60 Total: -20.73 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.28 Total: -44.86 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -2.09 Total: -48.59 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 51.55 SS G_CDS: -0.58 Total: 50.97 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.03 -9.34 -42.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354512997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.618 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds