Wall clock time and date at job start Wed Apr 1 2020 04:14:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35928 * 116.99822 * 2 1
4 4 C 1.38743 * 120.04122 * 0.02562 * 3 2 1
5 5 C 1.38119 * 119.95267 * 179.97438 * 4 3 2
6 6 C 1.38382 * 120.04709 * 0.02562 * 5 4 3
7 7 Cl 1.73601 * 119.95949 * 180.02562 * 6 5 4
8 8 C 1.38349 * 120.08327 * 0.02562 * 6 5 4
9 9 C 1.38169 * 120.04074 * 359.70393 * 8 6 5
10 10 C 1.50697 * 120.01780 * 180.29822 * 9 8 6
11 11 S 1.81401 * 109.47302 * 270.24807 * 10 9 8
12 12 O 1.42099 * 110.54096 * 291.62958 * 11 10 9
13 13 O 1.42102 * 110.53946 * 68.37884 * 11 10 9
14 14 N 1.65595 * 104.45102 * 180.02562 * 11 10 9
15 15 C 1.46505 * 120.00173 * 270.00199 * 14 11 10
16 16 C 1.46493 * 120.00217 * 89.99819 * 14 11 10
17 17 H 1.09006 * 109.47338 * 0.02562 * 16 14 11
18 18 C 1.52998 * 109.47748 * 240.00074 * 16 14 11
19 19 C 1.50709 * 109.47201 * 119.99800 * 16 14 11
20 20 H 1.07996 * 119.99434 * 0.02562 * 19 16 14
21 21 C 1.37874 * 120.00138 * 180.02562 * 19 16 14
22 22 N 1.31513 * 120.00065 * 0.02562 * 21 19 16
23 23 Si 1.86806 * 119.99824 * 180.02562 * 21 19 16
24 24 H 1.48493 * 109.46966 * 0.02562 * 23 21 19
25 25 H 1.48494 * 109.46990 * 120.00062 * 23 21 19
26 26 H 1.48501 * 109.46686 * 240.00121 * 23 21 19
27 27 H 1.09001 * 109.47103 * 180.02562 * 1 2 3
28 28 H 1.09004 * 109.47054 * 299.99733 * 1 2 3
29 29 H 1.09000 * 109.47187 * 59.99789 * 1 2 3
30 30 H 1.07998 * 120.02281 * 0.02562 * 4 3 2
31 31 H 1.08003 * 119.97737 * 180.02562 * 5 4 3
32 32 H 1.07997 * 119.97842 * 179.97438 * 8 6 5
33 33 H 1.08993 * 109.47451 * 30.25348 * 10 9 8
34 34 H 1.09008 * 109.46892 * 150.24954 * 10 9 8
35 35 H 1.09005 * 109.47117 * 89.99501 * 15 14 11
36 36 H 1.08992 * 109.47609 * 210.00034 * 15 14 11
37 37 H 1.09001 * 109.46733 * 330.00516 * 15 14 11
38 38 H 1.09000 * 109.46933 * 59.99935 * 18 16 14
39 39 H 1.09000 * 109.47537 * 180.02562 * 18 16 14
40 40 H 1.08997 * 109.47184 * 299.99957 * 18 16 14
41 41 H 0.97004 * 119.99908 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0461 1.2111 0.0000
4 6 1.2913 2.3753 0.0005
5 6 1.9202 3.6050 0.0011
6 6 3.3022 3.6764 0.0005
7 17 4.0903 5.2232 0.0019
8 6 4.0565 2.5167 -0.0011
9 6 3.4311 1.2847 0.0040
10 6 4.2533 0.0218 0.0091
11 16 4.5893 -0.4879 -1.6991
12 8 3.3933 -0.9157 -2.3362
13 8 5.4666 0.4341 -2.3312
14 7 5.4882 -1.8704 -1.5487
15 6 6.9494 -1.7902 -1.4793
16 6 4.8224 -3.1737 -1.4848
17 1 3.7434 -3.0342 -1.5514
18 6 5.1678 -3.8587 -0.1610
19 6 5.2890 -4.0330 -2.6317
20 1 6.0097 -3.6468 -3.3372
21 6 4.7957 -5.3119 -2.7801
22 7 3.9177 -5.7818 -1.9212
23 14 5.3746 -6.3771 -4.2013
24 1 6.3573 -5.6209 -5.0184
25 1 6.0156 -7.6064 -3.6694
26 1 4.2115 -6.7508 -5.0455
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 0.2127 2.3199 0.0014
31 1 1.3330 4.5114 0.0019
32 1 5.1350 2.5745 -0.0019
33 1 5.1955 0.2037 0.5259
34 1 3.7039 -0.7674 0.5224
35 1 7.2590 -1.6932 -0.4387
36 1 7.3836 -2.6949 -1.9047
37 1 7.2927 -0.9226 -2.0429
38 1 4.8303 -3.2373 0.6685
39 1 4.6728 -4.8287 -0.1137
40 1 6.2468 -3.9983 -0.0948
41 1 3.5710 -6.6818 -2.0254
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000354512997.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:14:09
Heat of formation + Delta-G solvation = -83.992534 kcal
Electronic energy + Delta-G solvation = -26999.652721 eV
Core-core repulsion = 23033.524833 eV
Total energy + Delta-G solvation = -3966.127888 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 347.079 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.51036 -37.88551 -36.52123 -36.41188 -36.15610 -35.24157 -33.24687 -32.55625
-30.24947 -29.07696 -27.92034 -27.09532 -25.47358 -25.14461 -22.53677 -22.07181
-20.65722 -18.38359 -18.05172 -17.04609 -16.83091 -16.61616 -16.37296 -15.93515
-15.51111 -15.29566 -14.80827 -14.58388 -14.15743 -13.76127 -13.49633 -13.45784
-13.15805 -12.90823 -12.60809 -12.43489 -12.10464 -12.03352 -11.93286 -11.75291
-11.44750 -11.41085 -11.32024 -11.17745 -11.08335 -10.92139 -10.88197 -10.79778
-10.67714 -10.37477 -10.19333 -10.00850 -9.25053 -9.14522 -8.43645 -8.29811
-7.88093 -6.05381 -4.11077 0.56341 0.97074 1.15165 1.96106 3.09737
3.29296 3.30329 3.36244 3.38050 3.43764 4.19536 4.39756 4.41496
4.50581 4.64549 4.77792 4.87184 5.03262 5.09120 5.16391 5.26361
5.28094 5.44665 5.47070 5.68092 5.74540 5.85370 5.90170 5.97341
6.11679 6.30508 6.37014 6.68102 6.78924 6.84464 7.04014 7.13006
7.45587 7.65084 7.81770 8.06621 8.29905 8.91016 9.54072 11.00469
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.017723 B = 0.003367 C = 0.003036
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1579.482534 B = 8312.995993 C = 9220.361185
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.296 6.296
3 C 0.150 3.850
4 C -0.198 4.198
5 C -0.065 4.065
6 C -0.073 4.073
7 Cl -0.070 7.070
8 C -0.060 4.060
9 C -0.104 4.104
10 C -0.590 4.590
11 S 2.601 3.399
12 O -0.936 6.936
13 O -0.969 6.969
14 N -0.981 5.981
15 C 0.092 3.908
16 C 0.265 3.735
17 H 0.063 0.937
18 C -0.150 4.150
19 C -0.516 4.516
20 H 0.064 0.936
21 C 0.063 3.937
22 N -0.891 5.891
23 Si 0.897 3.103
24 H -0.272 1.272
25 H -0.284 1.284
26 H -0.283 1.283
27 H 0.108 0.892
28 H 0.056 0.944
29 H 0.060 0.940
30 H 0.143 0.857
31 H 0.139 0.861
32 H 0.147 0.853
33 H 0.136 0.864
34 H 0.146 0.854
35 H 0.037 0.963
36 H 0.085 0.915
37 H 0.065 0.935
38 H 0.009 0.991
39 H 0.094 0.906
40 H 0.034 0.966
41 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.287 16.123 8.495 18.722
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.208 6.208
3 C 0.102 3.898
4 C -0.217 4.217
5 C -0.084 4.084
6 C -0.100 4.100
7 Cl -0.041 7.041
8 C -0.080 4.080
9 C -0.107 4.107
10 C -0.714 4.714
11 S 2.692 3.308
12 O -0.926 6.926
13 O -0.959 6.959
14 N -0.821 5.821
15 C -0.055 4.055
16 C 0.162 3.838
17 H 0.080 0.920
18 C -0.210 4.210
19 C -0.555 4.555
20 H 0.082 0.918
21 C -0.139 4.139
22 N -0.530 5.530
23 Si 0.725 3.275
24 H -0.197 1.197
25 H -0.210 1.210
26 H -0.209 1.209
27 H 0.126 0.874
28 H 0.074 0.926
29 H 0.079 0.921
30 H 0.161 0.839
31 H 0.157 0.843
32 H 0.165 0.835
33 H 0.155 0.845
34 H 0.164 0.836
35 H 0.055 0.945
36 H 0.104 0.896
37 H 0.084 0.916
38 H 0.028 0.972
39 H 0.112 0.888
40 H 0.053 0.947
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -4.498 16.276 7.746 18.578
hybrid contribution 0.177 -0.528 0.135 0.572
sum -4.321 15.749 7.880 18.133
Atomic orbital electron populations
1.23193 0.77666 1.04972 1.01203 1.86223 1.21968 1.25419 1.87197
1.18959 0.91556 0.85298 0.94001 1.21197 1.00654 0.91213 1.08593
1.20866 0.92304 0.98144 0.97104 1.20649 0.92790 0.86713 1.09817
1.98360 1.80677 1.27836 1.97212 1.20894 1.00942 0.89308 0.96850
1.18292 0.90331 0.93357 1.08713 1.29776 1.08047 1.03689 1.29930
1.05352 0.74636 0.73822 0.76966 1.93597 1.48073 1.80105 1.70864
1.93509 1.65493 1.64803 1.72125 1.57452 1.14681 1.21561 1.88368
1.21366 0.80505 1.03727 0.99864 1.18794 0.93449 0.77194 0.94383
0.91969 1.22158 1.00168 1.02917 0.95732 1.21362 1.25616 0.98051
1.10520 0.91825 1.24901 0.94895 0.97716 0.96406 1.69870 1.29980
1.17253 1.35853 0.86449 0.78658 0.80101 0.82269 1.19699 1.21024
1.20901 0.87383 0.92590 0.92139 0.83907 0.84332 0.83487 0.84548
0.83557 0.94454 0.89628 0.91598 0.97169 0.88801 0.94706 0.92806
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.24 9.81 101.05 0.99 1.23 16
2 O -0.30 -4.34 9.54 -19.51 -0.19 -4.53 16
3 C 0.15 2.10 6.66 -39.23 -0.26 1.84 16
4 C -0.20 -2.17 9.04 -39.44 -0.36 -2.53 16
5 C -0.07 -0.68 9.82 -39.57 -0.39 -1.07 16
6 C -0.07 -0.87 6.32 -39.49 -0.25 -1.12 16
7 Cl -0.07 -0.75 28.95 -51.86 -1.50 -2.25 16
8 C -0.06 -0.80 9.48 -39.57 -0.38 -1.17 16
9 C -0.10 -1.53 5.15 -104.48 -0.54 -2.07 16
10 C -0.59 -8.93 6.08 36.00 0.22 -8.72 16
11 S 2.60 51.55 5.40 -107.50 -0.58 50.97 16
12 O -0.94 -22.02 16.57 -57.54 -0.95 -22.98 16
13 O -0.97 -20.14 16.58 -57.54 -0.95 -21.09 16
14 N -0.98 -20.49 2.99 -115.85 -0.35 -20.84 16
15 C 0.09 1.63 9.64 59.85 0.58 2.21 16
16 C 0.26 6.47 2.57 -69.08 -0.18 6.29 16
17 H 0.06 1.68 6.87 -51.93 -0.36 1.32 16
18 C -0.15 -3.37 8.97 37.16 0.33 -3.04 16
19 C -0.52 -13.93 7.99 -34.44 -0.28 -14.21 16
20 H 0.06 1.72 7.33 -52.49 -0.38 1.33 16
21 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16
22 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16
23 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16
24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
26 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16
27 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16
28 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16
29 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16
30 H 0.14 1.14 6.30 -52.49 -0.33 0.80 16
31 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16
32 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16
33 H 0.14 1.64 8.09 -51.93 -0.42 1.22 16
34 H 0.15 2.19 7.53 -51.92 -0.39 1.80 16
35 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16
36 H 0.09 1.60 7.02 -51.93 -0.36 1.23 16
37 H 0.07 1.10 6.91 -51.93 -0.36 0.75 16
38 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16
39 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16
40 H 0.03 0.73 7.67 -51.93 -0.40 0.34 16
41 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16
LS Contribution 367.00 15.07 5.53 5.53
Total: -1.00 -33.03 367.00 -9.34 -42.37
By element:
Atomic # 1 Polarization: 6.82 SS G_CDS: -5.36 Total: 1.45 kcal
Atomic # 6 Polarization: -20.14 SS G_CDS: -0.60 Total: -20.73 kcal
Atomic # 7 Polarization: -45.14 SS G_CDS: 0.28 Total: -44.86 kcal
Atomic # 8 Polarization: -46.50 SS G_CDS: -2.09 Total: -48.59 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal
Atomic # 16 Polarization: 51.55 SS G_CDS: -0.58 Total: 50.97 kcal
Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -33.03 -9.34 -42.37 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000354512997.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.618 kcal
(2) G-P(sol) polarization free energy of solvation -33.030 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.648 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.993 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds