Wall clock time and date at job start Wed Apr 1 2020 04:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35928 * 116.99822 * 2 1 4 4 C 1.38743 * 120.04122 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.95267 * 179.97438 * 4 3 2 6 6 C 1.38382 * 120.04709 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 119.95949 * 180.02562 * 6 5 4 8 8 C 1.38349 * 120.08327 * 0.02562 * 6 5 4 9 9 C 1.38169 * 120.04074 * 359.70393 * 8 6 5 10 10 C 1.50697 * 120.01780 * 180.29822 * 9 8 6 11 11 S 1.81401 * 109.47302 * 270.24807 * 10 9 8 12 12 O 1.42099 * 110.54096 * 291.62958 * 11 10 9 13 13 O 1.42102 * 110.53946 * 68.37884 * 11 10 9 14 14 N 1.65595 * 104.45102 * 180.02562 * 11 10 9 15 15 C 1.46505 * 120.00173 * 270.00199 * 14 11 10 16 16 C 1.46493 * 120.00217 * 89.99819 * 14 11 10 17 17 H 1.09006 * 109.47338 * 0.02562 * 16 14 11 18 18 C 1.52998 * 109.47748 * 240.00074 * 16 14 11 19 19 C 1.50709 * 109.47201 * 119.99800 * 16 14 11 20 20 H 1.07996 * 119.99434 * 0.02562 * 19 16 14 21 21 C 1.37874 * 120.00138 * 180.02562 * 19 16 14 22 22 N 1.31513 * 120.00065 * 0.02562 * 21 19 16 23 23 Si 1.86806 * 119.99824 * 180.02562 * 21 19 16 24 24 H 1.48493 * 109.46966 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46990 * 120.00062 * 23 21 19 26 26 H 1.48501 * 109.46686 * 240.00121 * 23 21 19 27 27 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47054 * 299.99733 * 1 2 3 29 29 H 1.09000 * 109.47187 * 59.99789 * 1 2 3 30 30 H 1.07998 * 120.02281 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.97737 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.97842 * 179.97438 * 8 6 5 33 33 H 1.08993 * 109.47451 * 30.25348 * 10 9 8 34 34 H 1.09008 * 109.46892 * 150.24954 * 10 9 8 35 35 H 1.09005 * 109.47117 * 89.99501 * 15 14 11 36 36 H 1.08992 * 109.47609 * 210.00034 * 15 14 11 37 37 H 1.09001 * 109.46733 * 330.00516 * 15 14 11 38 38 H 1.09000 * 109.46933 * 59.99935 * 18 16 14 39 39 H 1.09000 * 109.47537 * 180.02562 * 18 16 14 40 40 H 1.08997 * 109.47184 * 299.99957 * 18 16 14 41 41 H 0.97004 * 119.99908 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9202 3.6050 0.0011 6 6 3.3022 3.6764 0.0005 7 17 4.0903 5.2232 0.0019 8 6 4.0565 2.5167 -0.0011 9 6 3.4311 1.2847 0.0040 10 6 4.2533 0.0218 0.0091 11 16 4.5893 -0.4879 -1.6991 12 8 3.3933 -0.9157 -2.3362 13 8 5.4666 0.4341 -2.3312 14 7 5.4882 -1.8704 -1.5487 15 6 6.9494 -1.7902 -1.4793 16 6 4.8224 -3.1737 -1.4848 17 1 3.7434 -3.0342 -1.5514 18 6 5.1678 -3.8587 -0.1610 19 6 5.2890 -4.0330 -2.6317 20 1 6.0097 -3.6468 -3.3372 21 6 4.7957 -5.3119 -2.7801 22 7 3.9177 -5.7818 -1.9212 23 14 5.3746 -6.3771 -4.2013 24 1 6.3573 -5.6209 -5.0184 25 1 6.0156 -7.6064 -3.6694 26 1 4.2115 -6.7508 -5.0455 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2127 2.3199 0.0014 31 1 1.3330 4.5114 0.0019 32 1 5.1350 2.5745 -0.0019 33 1 5.1955 0.2037 0.5259 34 1 3.7039 -0.7674 0.5224 35 1 7.2590 -1.6932 -0.4387 36 1 7.3836 -2.6949 -1.9047 37 1 7.2927 -0.9226 -2.0429 38 1 4.8303 -3.2373 0.6685 39 1 4.6728 -4.8287 -0.1137 40 1 6.2468 -3.9983 -0.0948 41 1 3.5710 -6.6818 -2.0254 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354512997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:09 Heat of formation + Delta-G solvation = -105.993507 kcal Electronic energy + Delta-G solvation = -27000.606755 eV Core-core repulsion = 23033.524833 eV Total energy + Delta-G solvation = -3967.081922 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.44172 -38.80830 -38.15147 -37.86748 -37.29674 -36.88244 -34.50571 -34.25598 -31.15699 -30.88963 -28.90053 -28.01049 -27.21319 -26.94412 -23.45545 -23.11081 -22.39674 -19.77816 -19.18625 -18.62875 -18.40929 -17.79372 -17.65903 -17.09954 -16.97891 -16.59924 -16.37661 -15.69077 -15.27625 -15.04108 -14.85368 -14.69046 -14.37687 -14.29253 -13.95169 -13.75129 -13.37742 -13.32178 -13.14481 -13.09537 -12.97903 -12.96869 -12.86553 -12.70106 -12.55134 -12.32353 -12.27045 -12.13650 -12.09554 -11.88154 -11.76535 -11.61892 -11.13045 -10.49026 -10.16084 -9.58586 -9.19038 -8.10310 -6.23087 -0.81026 0.05055 0.10606 1.08353 1.41206 1.43891 1.54569 1.83639 2.23015 2.38879 2.44751 2.91697 3.17683 3.20625 3.27501 3.62298 3.84481 3.95068 4.08867 4.15305 4.23546 4.33158 4.39710 4.53312 4.69911 4.73421 4.78815 4.79984 4.85538 5.02528 5.03656 5.05718 5.06075 5.17578 5.27841 5.41239 5.62843 5.74065 5.90985 6.17238 6.24220 6.32662 6.83973 7.45002 8.94027 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.003367 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.482534 B = 8312.995993 C = 9220.361185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.329 6.329 3 C 0.132 3.868 4 C -0.193 4.193 5 C -0.054 4.054 6 C -0.083 4.083 7 Cl -0.060 7.060 8 C -0.068 4.068 9 C -0.137 4.137 10 C -0.556 4.556 11 S 2.594 3.406 12 O -0.987 6.987 13 O -0.988 6.988 14 N -0.993 5.993 15 C 0.085 3.915 16 C 0.270 3.730 17 H 0.028 0.972 18 C -0.139 4.139 19 C -0.537 4.537 20 H 0.053 0.947 21 C 0.018 3.982 22 N -0.913 5.913 23 Si 0.954 3.046 24 H -0.272 1.272 25 H -0.273 1.273 26 H -0.283 1.283 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.156 0.844 33 H 0.172 0.828 34 H 0.149 0.851 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 17.855 9.813 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.242 6.242 3 C 0.084 3.916 4 C -0.212 4.212 5 C -0.073 4.073 6 C -0.110 4.110 7 Cl -0.031 7.031 8 C -0.087 4.087 9 C -0.140 4.140 10 C -0.686 4.686 11 S 2.692 3.308 12 O -0.978 6.978 13 O -0.978 6.978 14 N -0.832 5.832 15 C -0.060 4.060 16 C 0.166 3.834 17 H 0.046 0.954 18 C -0.198 4.198 19 C -0.576 4.576 20 H 0.072 0.928 21 C -0.182 4.182 22 N -0.552 5.552 23 Si 0.780 3.220 24 H -0.196 1.196 25 H -0.198 1.198 26 H -0.209 1.209 27 H 0.127 0.873 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.192 0.808 31 H 0.189 0.811 32 H 0.174 0.826 33 H 0.189 0.811 34 H 0.167 0.833 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.617 17.984 9.007 20.637 hybrid contribution 0.141 -0.883 -0.219 0.920 sum -4.476 17.101 8.788 19.741 Atomic orbital electron populations 1.23493 0.75745 1.05843 1.03117 1.86174 1.24241 1.26349 1.87400 1.19280 0.91781 0.86111 0.94398 1.21565 1.02145 0.90286 1.07200 1.21289 0.91995 0.99196 0.94787 1.20826 0.93550 0.86829 1.09756 1.98366 1.80647 1.26934 1.97161 1.21068 1.01672 0.89337 0.96658 1.18393 0.90922 0.93278 1.11434 1.29343 1.10238 1.04438 1.24538 1.05283 0.73420 0.73241 0.78826 1.93527 1.49630 1.80799 1.73801 1.93470 1.65624 1.64633 1.74109 1.57297 1.15912 1.20576 1.89378 1.21554 0.78814 1.03315 1.02309 1.18440 0.91771 0.78576 0.94613 0.95428 1.21963 1.00461 1.01762 0.95652 1.21672 1.25594 0.98907 1.11445 0.92837 1.25615 0.95087 0.98886 0.98610 1.69978 1.30611 1.17587 1.37012 0.85573 0.78122 0.78792 0.79551 1.19634 1.19806 1.20929 0.87269 0.89588 0.91195 0.80817 0.81097 0.82596 0.81066 0.83327 0.90728 0.91070 0.90917 0.94306 0.91407 0.93760 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -9.49 9.54 -92.74 -0.88 -10.38 16 3 C 0.13 3.54 6.66 22.50 0.15 3.69 16 4 C -0.19 -3.72 9.04 22.36 0.20 -3.52 16 5 C -0.05 -0.95 9.82 22.28 0.22 -0.73 16 6 C -0.08 -1.77 6.32 22.33 0.14 -1.63 16 7 Cl -0.06 -1.14 28.95 -2.72 -0.08 -1.22 16 8 C -0.07 -1.66 9.48 22.28 0.21 -1.45 16 9 C -0.14 -3.85 5.15 -19.77 -0.10 -3.95 16 10 C -0.56 -16.22 6.08 71.23 0.43 -15.78 16 11 S 2.59 104.22 5.40 -56.49 -0.30 103.91 16 12 O -0.99 -48.57 16.57 -127.65 -2.11 -50.68 16 13 O -0.99 -41.37 16.58 -127.65 -2.12 -43.49 16 14 N -0.99 -41.86 2.99 -520.43 -1.56 -43.42 16 15 C 0.09 2.98 9.64 127.77 1.23 4.22 16 16 C 0.27 13.53 2.57 44.25 0.11 13.65 16 17 H 0.03 1.57 6.87 -2.38 -0.02 1.56 16 18 C -0.14 -6.23 8.97 71.98 0.65 -5.58 16 19 C -0.54 -29.77 7.99 25.60 0.20 -29.56 16 20 H 0.05 2.98 7.33 -2.91 -0.02 2.96 16 21 C 0.02 0.98 5.30 84.65 0.45 1.43 16 22 N -0.91 -51.56 11.32 21.45 0.24 -51.32 16 23 Si 0.95 43.91 29.54 68.60 2.03 45.93 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 27 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.09 1.04 7.66 -2.38 -0.02 1.02 16 29 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 30 H 0.17 2.12 6.30 -2.91 -0.02 2.10 16 31 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.17 3.68 8.09 -2.39 -0.02 3.66 16 34 H 0.15 4.33 7.53 -2.39 -0.02 4.31 16 35 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.07 2.66 7.02 -2.39 -0.02 2.65 16 37 H 0.07 2.41 6.91 -2.39 -0.02 2.39 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 3.42 6.07 -2.39 -0.01 3.40 16 40 H 0.04 1.85 7.67 -2.39 -0.02 1.83 16 41 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -74.12 367.00 1.27 -72.85 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.05 Total: 15.70 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 5.01 Total: -37.90 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -1.32 Total: -94.73 kcal Atomic # 8 Polarization: -99.43 SS G_CDS: -5.12 Total: -104.55 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 104.22 SS G_CDS: -0.30 Total: 103.91 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -74.12 1.27 -72.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354512997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.141 kcal (2) G-P(sol) polarization free energy of solvation -74.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds