Wall clock time and date at job start Wed Apr 1 2020 04:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40083 * 126.04149 * 2 1 4 4 C 1.30838 * 108.20549 * 179.73885 * 3 2 1 5 5 C 1.39872 * 108.20202 * 0.43692 * 4 3 2 6 6 C 1.50701 * 126.03576 * 179.81449 * 5 4 3 7 7 S 1.81000 * 109.47130 * 269.69443 * 6 5 4 8 8 C 1.76204 * 99.99786 * 180.02562 * 7 6 5 9 9 N 1.32389 * 126.25914 * 0.03042 * 8 7 6 10 10 N 1.28516 * 110.20242 * 179.97438 * 9 8 7 11 11 C 1.33098 * 109.74574 * 359.97438 * 10 9 8 12 12 C 1.39776 * 126.56257 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99778 * 186.09356 * 12 11 10 14 14 C 1.40085 * 120.00068 * 6.08606 * 12 11 10 15 15 N 1.30808 * 119.99942 * 184.12744 * 14 12 11 16 16 Si 1.86799 * 119.99669 * 4.13543 * 14 12 11 17 17 H 1.48509 * 109.46950 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47355 * 299.99259 * 16 14 12 19 19 H 1.48501 * 109.47215 * 59.99928 * 16 14 12 20 20 N 1.36671 * 126.25846 * 180.29350 * 8 7 6 21 21 C 1.46504 * 127.15199 * 0.04162 * 20 8 7 22 22 C 1.34950 * 126.03202 * 180.02562 * 2 1 3 23 23 C 1.50698 * 126.13202 * 359.95924 * 22 2 1 24 24 F 1.39903 * 109.46590 * 30.02383 * 23 22 2 25 25 F 1.39892 * 109.47192 * 150.02544 * 23 22 2 26 26 F 1.39899 * 109.46980 * 270.02702 * 23 22 2 27 27 H 1.08997 * 109.47705 * 269.97744 * 1 2 3 28 28 H 1.09004 * 109.46877 * 29.97605 * 1 2 3 29 29 H 1.09001 * 109.47438 * 149.96927 * 1 2 3 30 30 H 1.08002 * 125.89899 * 180.26047 * 4 3 2 31 31 H 1.09008 * 109.46509 * 149.69779 * 6 5 4 32 32 H 1.08994 * 109.47287 * 29.70110 * 6 5 4 33 33 H 0.97000 * 120.00392 * 354.84969 * 15 14 12 34 34 H 1.09000 * 109.46642 * 270.17152 * 21 20 8 35 35 H 1.08991 * 109.47275 * 30.17219 * 21 20 8 36 36 H 1.08996 * 109.46979 * 150.17779 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0057 5 6 3.5436 -0.6667 -0.0007 6 6 4.7679 -1.5455 -0.0013 7 16 5.2575 -1.8969 -1.7080 8 6 6.6691 -2.9110 -1.4187 9 7 7.1536 -3.2599 -0.2371 10 7 8.1903 -4.0050 -0.3849 11 6 8.4360 -4.1816 -1.6811 12 6 9.4772 -4.9306 -2.2367 13 1 9.6373 -4.9233 -3.3047 14 6 10.3130 -5.6905 -1.4082 15 7 11.3360 -6.3267 -1.9179 16 14 9.9664 -5.7953 0.4244 17 1 10.9888 -6.6552 1.0730 18 1 10.0161 -4.4343 1.0162 19 1 8.6188 -6.3804 0.6406 20 7 7.4670 -3.4771 -2.3730 21 6 7.3240 -3.3641 -3.8267 22 6 2.2588 -1.0913 -0.0005 23 6 1.7972 -2.5259 -0.0003 24 9 0.5669 -2.6199 -0.6596 25 9 2.7416 -3.3197 -0.6598 26 9 1.6546 -2.9696 1.3188 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5143 30 1 4.4054 1.3708 0.0111 31 1 4.5442 -2.4805 0.5124 32 1 5.5822 -1.0345 0.5125 33 1 11.4732 -6.3340 -2.8781 34 1 6.6867 -4.1692 -4.1926 35 1 6.8733 -2.4031 -4.0739 36 1 8.3055 -3.4364 -4.2950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357074598.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:24 Heat of formation + Delta-G solvation = -4.590327 kcal Electronic energy + Delta-G solvation = -28012.475761 eV Core-core repulsion = 23439.119528 eV Total energy + Delta-G solvation = -4573.356233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.072 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.52206 -48.10556 -47.90272 -41.83751 -40.92139 -34.28182 -33.92301 -33.57060 -32.62737 -30.06526 -29.30510 -26.77295 -26.37723 -25.70476 -24.99679 -21.72737 -21.46768 -21.08564 -20.15693 -18.89549 -18.63949 -18.20816 -18.10558 -16.70517 -16.16141 -16.07796 -15.32329 -15.09236 -15.00023 -14.77409 -14.55173 -14.38544 -14.32939 -14.25732 -14.02830 -13.85379 -13.54092 -13.46627 -13.18671 -13.04664 -12.72852 -12.62032 -12.43323 -12.20771 -11.93886 -11.21660 -11.13139 -10.86982 -10.52787 -10.08306 -9.90230 -9.56879 -9.39155 -9.08236 -8.91167 -8.67130 -8.38708 -7.42497 -7.08520 -4.83977 0.83236 1.61548 1.72254 2.30383 2.38504 2.70955 2.91535 3.22746 3.57818 3.61135 3.67607 3.87823 3.97395 4.00841 4.05282 4.15641 4.41789 4.65723 4.66504 4.69314 4.92438 4.99742 5.11120 5.16289 5.38327 5.59114 5.73126 5.76436 5.91165 6.06845 6.19632 6.38247 6.65040 7.03201 7.12323 7.40046 7.53550 8.04871 8.35221 8.55786 9.96451 10.11545 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.003053 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.605897 B = 9170.442830 C = 9462.185850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.344 5.344 3 N -0.258 5.258 4 C 0.068 3.932 5 C -0.149 4.149 6 C -0.029 4.029 7 S -0.030 6.030 8 C 0.066 3.934 9 N -0.269 5.269 10 N -0.416 5.416 11 C 0.346 3.654 12 C -0.492 4.492 13 H 0.083 0.917 14 C 0.065 3.935 15 N -0.808 5.808 16 Si 1.112 2.888 17 H -0.312 1.312 18 H -0.260 1.260 19 H -0.280 1.280 20 N -0.512 5.512 21 C 0.102 3.898 22 C -0.005 4.005 23 C 0.537 3.463 24 F -0.176 7.176 25 F -0.142 7.142 26 F -0.166 7.166 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.202 0.798 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.283 0.717 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.515 11.237 0.343 23.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.127 5.127 3 N -0.079 5.079 4 C -0.118 4.118 5 C -0.163 4.163 6 C -0.179 4.179 7 S 0.199 5.801 8 C -0.308 4.308 9 N -0.113 5.113 10 N -0.265 5.265 11 C 0.102 3.898 12 C -0.533 4.533 13 H 0.101 0.899 14 C -0.158 4.158 15 N -0.432 5.432 16 Si 0.940 3.060 17 H -0.242 1.242 18 H -0.185 1.185 19 H -0.207 1.207 20 N -0.213 5.213 21 C -0.043 4.043 22 C -0.136 4.136 23 C 0.481 3.519 24 F -0.157 7.157 25 F -0.123 7.123 26 F -0.147 7.147 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.218 0.782 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.204 11.856 2.139 24.388 hybrid contribution 0.347 -0.635 -2.169 2.287 sum -20.857 11.222 -0.030 23.685 Atomic orbital electron populations 1.22367 0.72944 1.06244 1.04508 1.48349 1.07005 1.02042 1.55264 1.77504 1.01670 1.06534 1.22218 1.23962 0.95580 0.93464 0.98820 1.19378 0.91739 0.94446 1.10753 1.21707 0.96610 1.01983 0.97577 1.84736 1.26410 1.59828 1.09135 1.25463 1.03698 1.12506 0.89142 1.74255 1.06579 1.11279 1.19166 1.73986 1.15014 1.25011 1.12538 1.21711 0.89337 0.91325 0.87388 1.19394 1.11098 1.26022 0.96779 0.89912 1.27354 0.89614 0.89424 1.09411 1.70675 1.22963 1.33081 1.16468 0.82709 0.74635 0.77970 0.70637 1.24175 1.18532 1.20662 1.45830 1.24887 1.44577 1.06033 1.21536 1.02854 1.01578 0.78300 1.20564 0.92922 0.88272 1.11810 1.17299 0.75099 0.84949 0.74577 1.93123 1.44720 1.96499 1.81353 1.93393 1.63519 1.74981 1.80408 1.93276 1.95481 1.90507 1.35485 0.89847 0.88187 0.87926 0.78183 0.88045 0.87116 0.90565 0.92161 0.91172 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 11.19 59.84 0.67 1.17 16 2 N -0.34 -3.57 4.01 -63.89 -0.26 -3.83 16 3 N -0.26 -2.91 12.58 30.63 0.39 -2.53 16 4 C 0.07 0.73 11.96 -17.36 -0.21 0.52 16 5 C -0.15 -1.83 5.32 -105.05 -0.56 -2.39 16 6 C -0.03 -0.43 4.78 36.01 0.17 -0.25 16 7 S -0.03 -0.49 21.03 -107.50 -2.26 -2.75 16 8 C 0.07 1.47 8.09 -87.28 -0.71 0.76 16 9 N -0.27 -6.82 11.62 30.89 0.36 -6.46 16 10 N -0.42 -11.50 7.51 31.26 0.23 -11.26 16 11 C 0.35 9.20 7.27 -154.81 -1.13 8.07 16 12 C -0.49 -13.21 9.50 -38.31 -0.36 -13.57 16 13 H 0.08 2.15 7.47 -52.49 -0.39 1.76 16 14 C 0.06 1.75 5.52 -17.29 -0.10 1.65 16 15 N -0.81 -21.73 13.65 55.56 0.76 -20.97 16 16 Si 1.11 28.09 25.90 -169.99 -4.40 23.68 16 17 H -0.31 -7.57 7.11 56.52 0.40 -7.16 16 18 H -0.26 -6.74 6.76 56.52 0.38 -6.35 16 19 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 20 N -0.51 -11.81 3.26 -123.18 -0.40 -12.21 16 21 C 0.10 1.80 10.89 59.85 0.65 2.45 16 22 C 0.00 -0.05 6.39 -82.26 -0.53 -0.58 16 23 C 0.54 6.24 3.29 36.00 0.12 6.36 16 24 F -0.18 -1.75 14.55 2.25 0.03 -1.72 16 25 F -0.14 -1.98 14.52 2.25 0.03 -1.94 16 26 F -0.17 -1.96 17.30 2.25 0.04 -1.92 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.57 5.56 -51.93 -0.29 0.28 16 30 H 0.20 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.10 1.60 7.08 -51.91 -0.37 1.23 16 32 H 0.11 1.59 8.14 -51.92 -0.42 1.16 16 33 H 0.28 7.23 8.72 -40.82 -0.36 6.87 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 36 H 0.08 1.35 7.48 -51.93 -0.39 0.96 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -32.82 335.89 -5.52 -38.33 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: -3.13 Total: -5.69 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.97 Total: 4.19 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 1.08 Total: -57.26 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.10 Total: -5.58 kcal Atomic # 14 Polarization: 28.09 SS G_CDS: -4.40 Total: 23.68 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -2.26 Total: -2.75 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.82 -5.52 -38.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357074598.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.744 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds