Wall clock time and date at job start Wed Apr 1 2020 04:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40083 * 126.04149 * 2 1 4 4 C 1.30838 * 108.20549 * 179.73885 * 3 2 1 5 5 C 1.39872 * 108.20202 * 0.43692 * 4 3 2 6 6 C 1.50701 * 126.03576 * 179.81449 * 5 4 3 7 7 S 1.81000 * 109.47130 * 269.69443 * 6 5 4 8 8 C 1.76204 * 99.99786 * 180.02562 * 7 6 5 9 9 N 1.32389 * 126.25914 * 0.03042 * 8 7 6 10 10 N 1.28516 * 110.20242 * 179.97438 * 9 8 7 11 11 C 1.33098 * 109.74574 * 359.97438 * 10 9 8 12 12 C 1.39776 * 126.56257 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99778 * 186.09356 * 12 11 10 14 14 C 1.40085 * 120.00068 * 6.08606 * 12 11 10 15 15 N 1.30808 * 119.99942 * 184.12744 * 14 12 11 16 16 Si 1.86799 * 119.99669 * 4.13543 * 14 12 11 17 17 H 1.48509 * 109.46950 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47355 * 299.99259 * 16 14 12 19 19 H 1.48501 * 109.47215 * 59.99928 * 16 14 12 20 20 N 1.36671 * 126.25846 * 180.29350 * 8 7 6 21 21 C 1.46504 * 127.15199 * 0.04162 * 20 8 7 22 22 C 1.34950 * 126.03202 * 180.02562 * 2 1 3 23 23 C 1.50698 * 126.13202 * 359.95924 * 22 2 1 24 24 F 1.39903 * 109.46590 * 30.02383 * 23 22 2 25 25 F 1.39892 * 109.47192 * 150.02544 * 23 22 2 26 26 F 1.39899 * 109.46980 * 270.02702 * 23 22 2 27 27 H 1.08997 * 109.47705 * 269.97744 * 1 2 3 28 28 H 1.09004 * 109.46877 * 29.97605 * 1 2 3 29 29 H 1.09001 * 109.47438 * 149.96927 * 1 2 3 30 30 H 1.08002 * 125.89899 * 180.26047 * 4 3 2 31 31 H 1.09008 * 109.46509 * 149.69779 * 6 5 4 32 32 H 1.08994 * 109.47287 * 29.70110 * 6 5 4 33 33 H 0.97000 * 120.00392 * 354.84969 * 15 14 12 34 34 H 1.09000 * 109.46642 * 270.17152 * 21 20 8 35 35 H 1.08991 * 109.47275 * 30.17219 * 21 20 8 36 36 H 1.08996 * 109.46979 * 150.17779 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0057 5 6 3.5436 -0.6667 -0.0007 6 6 4.7679 -1.5455 -0.0013 7 16 5.2575 -1.8969 -1.7080 8 6 6.6691 -2.9110 -1.4187 9 7 7.1536 -3.2599 -0.2371 10 7 8.1903 -4.0050 -0.3849 11 6 8.4360 -4.1816 -1.6811 12 6 9.4772 -4.9306 -2.2367 13 1 9.6373 -4.9233 -3.3047 14 6 10.3130 -5.6905 -1.4082 15 7 11.3360 -6.3267 -1.9179 16 14 9.9664 -5.7953 0.4244 17 1 10.9888 -6.6552 1.0730 18 1 10.0161 -4.4343 1.0162 19 1 8.6188 -6.3804 0.6406 20 7 7.4670 -3.4771 -2.3730 21 6 7.3240 -3.3641 -3.8267 22 6 2.2588 -1.0913 -0.0005 23 6 1.7972 -2.5259 -0.0003 24 9 0.5669 -2.6199 -0.6596 25 9 2.7416 -3.3197 -0.6598 26 9 1.6546 -2.9696 1.3188 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5143 30 1 4.4054 1.3708 0.0111 31 1 4.5442 -2.4805 0.5124 32 1 5.5822 -1.0345 0.5125 33 1 11.4732 -6.3340 -2.8781 34 1 6.6867 -4.1692 -4.1926 35 1 6.8733 -2.4031 -4.0739 36 1 8.3055 -3.4364 -4.2950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357074598.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:23 Heat of formation + Delta-G solvation = -24.182012 kcal Electronic energy + Delta-G solvation = -28013.325321 eV Core-core repulsion = 23439.119528 eV Total energy + Delta-G solvation = -4574.205793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.072 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.45111 -48.99989 -48.88906 -42.81495 -42.68503 -35.91744 -35.41469 -35.02021 -33.55129 -31.97913 -30.23566 -28.40960 -27.33580 -27.10553 -26.25276 -23.31099 -22.55516 -22.28916 -21.77670 -20.16748 -19.82055 -19.53394 -19.08366 -18.19752 -17.14866 -16.97907 -16.85583 -16.78359 -15.99128 -15.78866 -15.76298 -15.65793 -15.43898 -15.25375 -15.13943 -15.12240 -15.00561 -14.68236 -14.54526 -14.26471 -14.14387 -13.71240 -13.51251 -13.27942 -13.16579 -13.07214 -12.83215 -12.09209 -11.99517 -11.81761 -11.52347 -11.38343 -10.91734 -10.86668 -10.53964 -10.35429 -9.80636 -9.46952 -8.65126 -6.83494 -0.17001 0.45321 0.82487 1.01466 1.05733 1.49050 1.54679 1.61220 1.62941 1.95990 2.15403 2.24402 2.33280 2.43897 2.77440 3.06457 3.06755 3.17451 3.63868 3.94871 3.96588 4.02606 4.26949 4.35280 4.39519 4.50284 4.56224 4.57868 4.58528 4.64657 4.73199 5.21707 5.26018 5.39204 5.43758 5.72212 6.02773 6.20050 6.41609 6.59552 7.94619 8.18640 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.003053 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.605897 B = 9170.442830 C = 9462.185850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.338 5.338 3 N -0.269 5.269 4 C 0.073 3.927 5 C -0.166 4.166 6 C -0.024 4.024 7 S 0.015 5.985 8 C 0.082 3.918 9 N -0.308 5.308 10 N -0.447 5.447 11 C 0.326 3.674 12 C -0.509 4.509 13 H 0.083 0.917 14 C 0.042 3.958 15 N -0.825 5.825 16 Si 1.144 2.856 17 H -0.298 1.298 18 H -0.275 1.275 19 H -0.295 1.295 20 N -0.515 5.515 21 C 0.093 3.907 22 C -0.005 4.005 23 C 0.540 3.460 24 F -0.164 7.164 25 F -0.158 7.158 26 F -0.168 7.168 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.226 0.774 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.286 0.714 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.836 12.973 -0.225 26.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.120 5.120 3 N -0.091 5.091 4 C -0.113 4.113 5 C -0.181 4.181 6 C -0.173 4.173 7 S 0.243 5.757 8 C -0.293 4.293 9 N -0.151 5.151 10 N -0.296 5.296 11 C 0.078 3.922 12 C -0.550 4.550 13 H 0.101 0.899 14 C -0.177 4.177 15 N -0.450 5.450 16 Si 0.973 3.027 17 H -0.228 1.228 18 H -0.202 1.202 19 H -0.222 1.222 20 N -0.215 5.215 21 C -0.050 4.050 22 C -0.137 4.137 23 C 0.484 3.516 24 F -0.145 7.145 25 F -0.139 7.139 26 F -0.149 7.149 27 H 0.119 0.881 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.242 0.758 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.538 13.596 1.554 27.227 hybrid contribution 0.725 -0.988 -2.026 2.368 sum -22.813 12.608 -0.471 26.069 Atomic orbital electron populations 1.22743 0.70716 1.07514 1.06083 1.48729 1.08259 1.01332 1.53688 1.77514 1.01934 1.06900 1.22717 1.24348 0.96273 0.92948 0.97699 1.19214 0.90989 0.94899 1.13043 1.21676 0.97817 1.01915 0.95925 1.84646 1.22658 1.57441 1.10917 1.26590 1.03945 1.10379 0.88373 1.74190 1.07176 1.13027 1.20677 1.73858 1.16221 1.25944 1.13554 1.21780 0.90330 0.92305 0.87743 1.19393 1.11896 1.26937 0.96799 0.89865 1.27745 0.89815 0.89585 1.10596 1.70667 1.23433 1.34125 1.16768 0.82225 0.73893 0.77018 0.69544 1.22768 1.20156 1.22247 1.46202 1.23868 1.43286 1.08126 1.21900 1.03893 1.03884 0.75277 1.20577 0.93170 0.88534 1.11446 1.17266 0.75194 0.84755 0.74433 1.93147 1.43840 1.96458 1.81094 1.93355 1.64316 1.75485 1.80756 1.93273 1.95482 1.90544 1.35614 0.88108 0.86423 0.87200 0.75775 0.89437 0.86928 0.90289 0.90483 0.88231 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 11.19 127.77 1.43 2.08 16 2 N -0.34 -6.08 4.01 -356.04 -1.43 -7.51 16 3 N -0.27 -5.32 12.58 -57.02 -0.72 -6.04 16 4 C 0.07 1.37 11.96 85.24 1.02 2.39 16 5 C -0.17 -3.75 5.32 -20.14 -0.11 -3.85 16 6 C -0.02 -0.66 4.78 71.24 0.34 -0.32 16 7 S 0.02 0.47 21.03 -56.49 -1.19 -0.72 16 8 C 0.08 3.58 8.09 179.18 1.45 5.03 16 9 N -0.31 -15.64 11.62 -56.17 -0.65 -16.30 16 10 N -0.45 -25.07 7.51 -55.02 -0.41 -25.48 16 11 C 0.33 17.44 7.27 133.23 0.97 18.41 16 12 C -0.51 -27.66 9.50 23.09 0.22 -27.44 16 13 H 0.08 4.37 7.47 -2.91 -0.02 4.35 16 14 C 0.04 2.33 5.52 85.29 0.47 2.80 16 15 N -0.82 -44.73 13.65 21.86 0.30 -44.43 16 16 Si 1.14 58.47 25.90 68.60 1.78 60.24 16 17 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 18 H -0.27 -14.59 6.76 99.48 0.67 -13.91 16 19 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 20 N -0.52 -23.23 3.26 -543.63 -1.77 -25.00 16 21 C 0.09 3.08 10.89 127.77 1.39 4.47 16 22 C 0.00 -0.10 6.39 41.40 0.26 0.17 16 23 C 0.54 11.59 3.29 71.24 0.23 11.83 16 24 F -0.16 -2.90 14.55 44.97 0.65 -2.24 16 25 F -0.16 -4.19 14.52 44.97 0.65 -3.54 16 26 F -0.17 -3.72 17.30 44.97 0.78 -2.94 16 27 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.12 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.11 0.90 5.56 -2.39 -0.01 0.88 16 30 H 0.23 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.09 2.70 7.08 -2.39 -0.02 2.69 16 32 H 0.11 3.08 8.14 -2.40 -0.02 3.07 16 33 H 0.29 14.75 8.72 -92.71 -0.81 13.94 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.10 2.70 7.85 -2.39 -0.02 2.68 16 36 H 0.08 2.71 7.48 -2.39 -0.02 2.70 16 Total: -1.00 -70.77 335.89 6.76 -64.01 By element: Atomic # 1 Polarization: -6.70 SS G_CDS: 1.09 Total: -5.61 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 7.68 Total: 15.56 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -4.68 Total: -124.77 kcal Atomic # 9 Polarization: -10.81 SS G_CDS: 2.09 Total: -8.72 kcal Atomic # 14 Polarization: 58.47 SS G_CDS: 1.78 Total: 60.24 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -1.19 Total: -0.72 kcal Total: -70.77 6.76 -64.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357074598.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.832 kcal (2) G-P(sol) polarization free energy of solvation -70.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds