Wall clock time and date at job start Wed Apr 1 2020 04:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35545 * 117.00266 * 2 1 4 4 N 1.29512 * 124.93948 * 359.97438 * 3 2 1 5 5 C 1.32076 * 116.92070 * 180.02562 * 4 3 2 6 6 C 1.33378 * 114.56346 * 359.97438 * 5 4 3 7 7 S 1.76193 * 125.97237 * 179.97438 * 6 5 4 8 8 O 1.42102 * 106.40351 * 336.46103 * 7 6 5 9 9 O 1.42102 * 106.40493 * 203.54174 * 7 6 5 10 10 N 1.65602 * 107.21976 * 90.00396 * 7 6 5 11 11 C 1.46500 * 119.99873 * 64.99754 * 10 7 6 12 12 C 1.53065 * 109.45413 * 94.79597 * 11 10 7 13 13 C 1.53192 * 109.29648 * 181.24177 * 12 11 10 14 14 N 1.46922 * 108.89269 * 305.57538 * 13 12 11 15 15 C 1.36942 * 120.62796 * 233.51528 * 14 13 12 16 16 H 1.08007 * 119.99636 * 151.83092 * 15 14 13 17 17 C 1.38806 * 120.00203 * 331.83144 * 15 14 13 18 18 N 1.31624 * 120.00191 * 343.08250 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 163.07925 * 17 15 14 20 20 H 1.48503 * 109.47195 * 89.99708 * 19 17 15 21 21 H 1.48498 * 109.47355 * 210.00264 * 19 17 15 22 22 H 1.48504 * 109.46850 * 330.00278 * 19 17 15 23 23 C 1.46924 * 118.73925 * 53.53382 * 14 13 12 24 24 C 1.53049 * 109.45577 * 215.00277 * 11 10 7 25 25 S 1.70969 * 124.94124 * 180.30445 * 3 2 1 26 26 H 1.08999 * 109.47109 * 300.00237 * 1 2 3 27 27 H 1.09003 * 109.47025 * 60.00028 * 1 2 3 28 28 H 1.08998 * 109.47174 * 180.02562 * 1 2 3 29 29 H 1.08003 * 122.71695 * 180.02562 * 5 4 3 30 30 H 0.97002 * 120.00067 * 245.00256 * 10 7 6 31 31 H 1.08992 * 109.46107 * 334.97162 * 11 10 7 32 32 H 1.09005 * 109.39523 * 61.36241 * 12 11 10 33 33 H 1.09004 * 109.62174 * 301.25928 * 12 11 10 34 34 H 1.09003 * 109.58615 * 185.71531 * 13 12 11 35 35 H 1.08998 * 109.58372 * 65.43477 * 13 12 11 36 36 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 37 37 H 1.09007 * 109.58325 * 66.18371 * 23 14 13 38 38 H 1.08996 * 109.58499 * 186.46256 * 23 14 13 39 39 H 1.09002 * 109.49883 * 58.66699 * 24 11 10 40 40 H 1.08993 * 109.49715 * 298.56552 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 7 1.4352 2.3506 -0.0005 5 6 2.1932 3.4322 -0.0009 6 6 3.5048 3.1901 -0.0003 7 16 4.7814 4.4045 -0.0013 8 8 4.2110 5.5860 -0.5471 9 8 5.9337 3.7750 -0.5447 10 7 5.1362 4.7441 1.5803 11 6 5.7145 3.7083 2.4399 12 6 7.2392 3.8430 2.4452 13 6 7.8419 2.7393 3.3202 14 7 7.2237 2.7971 4.6518 15 6 7.9987 2.8793 5.7778 16 1 7.6135 3.3608 6.6645 17 6 9.2793 2.3437 5.7796 18 7 9.6332 1.4810 4.8506 19 14 10.5005 2.8474 7.1003 20 1 10.3825 1.9277 8.2603 21 1 11.8789 2.7785 6.5522 22 1 10.2108 4.2364 7.5385 23 6 5.7582 2.7647 4.7523 24 6 5.1784 3.8701 3.8643 25 16 3.7377 1.4438 -0.0074 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7841 4.4317 -0.0009 30 1 4.9611 5.6288 1.9375 31 1 5.4403 2.7249 2.0583 32 1 7.5151 4.8177 2.8477 33 1 7.6186 3.7484 1.4277 34 1 8.9176 2.8906 3.4098 35 1 7.6460 1.7670 2.8683 36 1 10.5279 1.1064 4.8521 37 1 5.3903 1.7952 4.4162 38 1 5.4593 2.9301 5.7874 39 1 4.0910 3.7959 3.8544 40 1 5.4736 4.8435 4.2557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383884883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:02 Heat of formation + Delta-G solvation = -36.474290 kcal Electronic energy + Delta-G solvation = -26594.870800 eV Core-core repulsion = 22665.139915 eV Total energy + Delta-G solvation = -3929.730885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.62594 -38.41474 -38.09379 -37.13629 -35.87499 -34.66936 -31.93282 -30.56227 -30.01971 -29.18065 -28.35075 -25.20994 -24.87674 -22.24257 -22.00295 -21.56665 -20.17397 -19.57690 -18.96988 -17.66229 -17.51003 -16.83579 -16.75128 -16.54799 -15.92630 -15.51895 -14.89139 -14.59293 -14.20936 -14.16273 -13.86569 -13.55115 -13.12526 -12.98850 -12.97886 -12.53191 -12.19420 -12.05718 -11.96810 -11.95013 -11.88771 -11.78911 -11.45895 -11.10234 -11.04769 -10.72437 -10.55774 -10.31188 -10.25787 -10.20677 -9.96365 -9.83879 -9.59684 -9.15200 -9.02091 -8.46780 -6.70704 -5.80670 -3.23519 -0.01963 0.26474 0.54545 1.15997 2.22795 2.88139 3.04142 3.36961 3.44496 3.46378 3.66214 3.83896 4.41514 4.48267 4.76401 4.81258 4.99856 5.00968 5.09073 5.33919 5.36434 5.40530 5.52050 5.60952 5.66103 6.03308 6.20327 6.30196 6.37301 6.50754 6.62165 6.69955 6.80099 6.87412 7.01316 7.06210 7.36068 7.65570 7.78265 8.43262 9.19038 9.82077 10.38178 11.27933 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.003262 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.776801 B = 8582.750494 C = 9553.129940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.272 6.272 3 C 0.244 3.756 4 N -0.553 5.553 5 C 0.218 3.782 6 C -0.870 4.870 7 S 2.724 3.276 8 O -0.960 6.960 9 O -0.944 6.944 10 N -1.106 6.106 11 C 0.160 3.840 12 C -0.157 4.157 13 C 0.171 3.829 14 N -0.592 5.592 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.146 3.854 24 C -0.137 4.137 25 S 0.316 5.684 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.193 0.807 30 H 0.417 0.583 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.022 0.978 36 H 0.255 0.745 37 H 0.019 0.981 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.329 0.935 -10.460 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.178 6.178 3 C -0.069 4.069 4 N -0.286 5.286 5 C 0.059 3.941 6 C -1.074 5.074 7 S 2.807 3.193 8 O -0.950 6.950 9 O -0.934 6.934 10 N -0.867 5.867 11 C 0.054 3.946 12 C -0.198 4.198 13 C 0.044 3.956 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.019 3.981 24 C -0.178 4.178 25 S 0.569 5.431 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.210 0.790 30 H 0.252 0.748 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.396 -0.089 -11.302 19.914 hybrid contribution -0.759 0.999 1.123 1.684 sum -17.155 0.909 -10.179 19.968 Atomic orbital electron populations 1.23163 0.75827 1.04130 1.03227 1.86388 1.23946 1.20671 1.86760 1.26065 0.96983 0.88795 0.95061 1.66808 1.39306 0.97205 1.25240 1.21072 0.86822 0.97927 0.88262 1.37277 1.19289 1.16111 1.34686 1.01247 0.72833 0.72542 0.72668 1.93577 1.79598 1.44996 1.76805 1.93631 1.45696 1.77503 1.76557 1.55715 1.77984 1.22005 1.30993 1.20897 0.94743 0.88222 0.90750 1.22764 0.93185 1.02615 1.01261 1.20801 0.99099 0.92698 0.82958 1.44098 0.99236 1.85491 1.02612 1.19151 0.96233 1.30633 0.92483 0.91691 1.25051 0.99573 0.96677 0.98187 1.70019 1.19432 1.29199 1.35812 0.86316 0.80852 0.78430 0.81248 1.21430 1.21536 1.20504 1.20877 0.86093 0.94062 0.97117 1.22368 0.98808 1.02207 0.94439 1.84378 0.96983 0.95276 1.66413 0.91458 0.91583 0.87432 0.79001 0.74779 0.90923 0.91895 0.91540 0.88995 0.96028 0.93533 0.96312 0.92301 0.92603 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.63 101.05 1.07 1.31 16 2 O -0.27 -2.79 10.56 -18.33 -0.19 -2.99 16 3 C 0.24 2.85 8.13 51.78 0.42 3.27 16 4 N -0.55 -6.54 9.88 -16.00 -0.16 -6.70 16 5 C 0.22 2.44 11.06 -19.15 -0.21 2.23 16 6 C -0.87 -10.66 6.47 29.03 0.19 -10.47 16 7 S 2.72 36.69 5.80 -107.50 -0.62 36.06 16 8 O -0.96 -14.02 17.83 -57.17 -1.02 -15.04 16 9 O -0.94 -15.53 17.18 -57.17 -0.98 -16.51 16 10 N -1.11 -14.09 5.47 -4.84 -0.03 -14.11 16 11 C 0.16 2.49 2.61 -67.87 -0.18 2.31 16 12 C -0.16 -2.93 5.70 -26.60 -0.15 -3.09 16 13 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 14 N -0.59 -14.16 3.00 -172.32 -0.52 -14.68 16 15 C -0.26 -6.78 9.58 -15.06 -0.14 -6.92 16 16 H 0.07 1.69 7.89 -52.48 -0.41 1.27 16 17 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 18 N -0.90 -25.57 11.20 55.49 0.62 -24.95 16 19 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.15 2.84 6.52 -3.71 -0.02 2.82 16 24 C -0.14 -2.13 5.61 -26.61 -0.15 -2.28 16 25 S 0.32 3.81 22.99 -107.50 -2.47 1.34 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.19 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.42 4.36 8.84 -34.47 -0.30 4.06 16 31 H 0.07 1.12 7.70 -51.93 -0.40 0.72 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.22 7.61 -51.93 -0.40 0.82 16 34 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -32.93 358.87 -9.45 -42.39 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.18 Total: 0.43 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 0.72 Total: -6.88 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.08 Total: -60.43 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -2.20 Total: -34.54 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 16 Polarization: 40.50 SS G_CDS: -3.10 Total: 37.40 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.93 -9.45 -42.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383884883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.912 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds