Wall clock time and date at job start Wed Apr 1 2020 04:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35930 * 116.99986 * 2 1 4 4 C 1.38707 * 120.05650 * 359.72179 * 3 2 1 5 5 C 1.38150 * 119.95366 * 180.29946 * 4 3 2 6 6 C 1.38282 * 120.07704 * 359.95953 * 5 4 3 7 7 C 1.50697 * 119.93922 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47251 * 270.01691 * 7 6 5 9 9 C 1.46494 * 119.99817 * 275.00240 * 8 7 6 10 10 S 1.65600 * 119.99882 * 95.00165 * 8 7 6 11 11 O 1.42102 * 104.27571 * 206.07197 * 10 8 7 12 12 O 1.42101 * 104.27348 * 333.92883 * 10 8 7 13 13 C 1.81400 * 104.45033 * 89.99968 * 10 8 7 14 14 C 1.53000 * 109.46816 * 179.97438 * 13 10 8 15 15 C 1.50708 * 109.46654 * 180.02562 * 14 13 10 16 16 H 1.08001 * 120.00306 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99777 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99811 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99948 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47041 * 89.99557 * 19 17 15 21 21 H 1.48503 * 109.46923 * 209.99776 * 19 17 15 22 22 H 1.48505 * 109.46933 * 329.99410 * 19 17 15 23 23 C 1.38249 * 120.12038 * 0.03767 * 6 5 4 24 24 C 1.38253 * 120.04031 * 359.97438 * 23 6 5 25 25 Cl 1.73601 * 120.03985 * 179.97438 * 24 23 6 26 26 H 1.09002 * 109.46907 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46894 * 300.00228 * 1 2 3 28 28 H 1.09001 * 109.46908 * 60.00014 * 1 2 3 29 29 H 1.07998 * 120.02447 * 0.27659 * 4 3 2 30 30 H 1.07993 * 119.96357 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47317 * 30.02322 * 7 6 5 32 32 H 1.09000 * 109.47154 * 150.01851 * 7 6 5 33 33 H 1.09001 * 109.47431 * 90.00071 * 9 8 7 34 34 H 1.09000 * 109.47020 * 209.99553 * 9 8 7 35 35 H 1.08998 * 109.47501 * 329.99636 * 9 8 7 36 36 H 1.08994 * 109.47208 * 300.00232 * 13 10 8 37 37 H 1.09000 * 109.46756 * 60.00029 * 13 10 8 38 38 H 1.08994 * 109.47258 * 299.99760 * 14 13 10 39 39 H 1.09000 * 109.47274 * 60.00542 * 14 13 10 40 40 H 0.97005 * 119.99803 * 179.97438 * 18 17 15 41 41 H 1.07993 * 119.97937 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2919 2.3752 -0.0058 5 6 1.9213 3.6050 -0.0121 6 6 3.3022 3.6767 -0.0117 7 6 3.9856 5.0198 -0.0179 8 7 4.2074 5.4485 -1.4012 9 6 5.3975 4.9965 -2.1261 10 16 3.1129 6.4438 -2.1452 11 8 3.2648 6.1594 -3.5291 12 8 1.8883 6.1821 -1.4736 13 6 3.6981 8.1197 -1.7717 14 6 2.7585 9.1427 -2.4130 15 6 3.2451 10.5350 -2.1032 16 1 4.1352 10.6761 -1.5080 17 6 2.5533 11.6288 -2.5787 18 7 1.4691 11.4571 -3.3030 19 14 3.1568 13.3546 -2.1953 20 1 4.0951 13.7982 -3.2574 21 1 1.9989 14.2826 -2.1385 22 1 3.8561 13.3548 -0.8853 23 6 4.0571 2.5185 -0.0058 24 6 3.4323 1.2852 0.0002 25 17 4.3802 -0.1692 0.0069 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2133 2.3202 -0.0059 30 1 1.3342 4.5113 -0.0170 31 1 3.3570 5.7496 0.4923 32 1 4.9434 4.9425 0.4965 33 1 5.1753 4.0632 -2.6434 34 1 5.6895 5.7542 -2.8532 35 1 6.2132 4.8359 -1.4212 36 1 3.7136 8.2669 -0.6918 37 1 4.7040 8.2506 -2.1706 38 1 2.7435 8.9954 -3.4928 39 1 1.7524 9.0120 -2.0144 40 1 0.9822 12.2266 -3.6372 41 1 5.1354 2.5772 -0.0051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416612537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:48 Heat of formation + Delta-G solvation = -93.187486 kcal Electronic energy + Delta-G solvation = -25936.807946 eV Core-core repulsion = 21970.281335 eV Total energy + Delta-G solvation = -3966.526611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.43912 -38.25259 -36.73301 -36.62677 -35.77610 -35.40312 -33.92109 -31.21185 -31.10624 -31.02955 -28.17595 -26.76839 -25.64707 -24.57937 -22.86662 -21.70232 -21.42728 -18.59572 -18.44253 -17.54727 -16.68461 -16.49219 -16.37904 -16.08062 -15.90996 -15.40628 -14.65001 -14.60660 -14.56942 -14.23091 -14.13719 -13.51312 -13.42183 -13.33818 -12.86071 -12.53777 -12.39778 -12.32997 -11.84421 -11.78769 -11.74374 -11.62421 -11.52174 -11.48495 -11.11960 -11.08962 -11.07553 -10.99133 -10.95793 -10.44291 -10.41157 -9.80775 -9.39373 -9.05702 -8.89042 -8.53339 -8.31683 -6.15465 -4.21193 0.65908 1.01020 1.10516 2.01740 2.93062 2.97038 3.23955 3.30345 3.32813 3.48878 4.26053 4.36100 4.48481 4.55317 4.61741 4.66123 4.77926 4.87798 4.97961 5.08912 5.17282 5.19791 5.22016 5.32213 5.44334 5.53600 5.56408 5.62858 5.66629 5.79685 5.81826 5.97515 6.11754 6.39122 6.45081 6.45846 6.60487 7.00390 7.26311 7.32210 7.77512 8.14219 8.82280 9.43796 10.95529 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.002430 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.863586 B =11519.588490 C =12121.956176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.137 3.863 4 C -0.201 4.201 5 C -0.049 4.049 6 C -0.134 4.134 7 C 0.170 3.830 8 N -1.006 6.006 9 C 0.095 3.905 10 S 2.588 3.412 11 O -0.962 6.962 12 O -0.962 6.962 13 C -0.590 4.590 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.057 4.057 24 C -0.077 4.077 25 Cl -0.064 7.064 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.138 0.862 30 H 0.154 0.846 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.265 0.735 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.034 -21.105 9.229 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.091 3.909 4 C -0.220 4.220 5 C -0.068 4.068 6 C -0.137 4.137 7 C 0.044 3.956 8 N -0.842 5.842 9 C -0.050 4.050 10 S 2.686 3.314 11 O -0.952 6.952 12 O -0.953 6.953 13 C -0.723 4.723 14 C -0.011 4.011 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.076 4.076 24 C -0.104 4.104 25 Cl -0.036 7.036 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.171 0.829 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.340 -21.678 8.626 23.569 hybrid contribution 0.553 1.290 0.383 1.455 sum 3.893 -20.388 9.009 22.627 Atomic orbital electron populations 1.23123 0.77985 1.04137 1.01741 1.86136 1.21622 1.26034 1.88307 1.18741 0.90534 0.85163 0.96513 1.21280 1.00442 0.91567 1.08704 1.21459 0.94364 0.98378 0.92555 1.20166 0.93912 0.95400 1.04177 1.20084 1.00681 0.92301 0.82485 1.57811 1.39231 1.64282 1.22841 1.21424 0.86595 1.00688 0.96307 1.05854 0.74126 0.77292 0.74088 1.93544 1.85916 1.83845 1.31933 1.93484 1.41996 1.84272 1.75504 1.30493 1.11785 1.19261 1.10746 1.18960 0.93150 0.92786 0.96170 1.21004 1.11433 0.89667 1.33920 0.92036 1.25072 0.94859 0.99671 0.94886 1.69954 1.17036 1.31038 1.34813 0.86470 0.78402 0.83614 0.78809 1.20439 1.20985 1.19745 1.20772 1.00295 0.89235 0.97323 1.20083 0.88633 0.88606 1.13052 1.98351 1.71614 1.36347 1.97245 0.88048 0.92375 0.92281 0.84454 0.82865 0.88720 0.89397 0.92734 0.90868 0.91262 0.86227 0.86298 0.94932 0.94824 0.92503 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.37 9.96 -19.52 -0.19 -3.57 16 3 C 0.14 1.63 6.68 -39.19 -0.26 1.37 16 4 C -0.20 -2.30 9.04 -39.44 -0.36 -2.66 16 5 C -0.05 -0.61 9.11 -39.60 -0.36 -0.97 16 6 C -0.13 -1.56 5.46 -104.60 -0.57 -2.13 16 7 C 0.17 1.79 5.43 -5.19 -0.03 1.76 16 8 N -1.01 -12.75 3.10 -123.06 -0.38 -13.14 16 9 C 0.10 1.01 10.24 59.84 0.61 1.62 16 10 S 2.59 44.58 5.32 -107.50 -0.57 44.01 16 11 O -0.96 -19.72 17.09 -57.54 -0.98 -20.71 16 12 O -0.96 -17.96 14.81 -57.54 -0.85 -18.81 16 13 C -0.59 -10.84 6.12 37.16 0.23 -10.61 16 14 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 15 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 19 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.06 -0.61 9.48 -39.57 -0.38 -0.99 16 24 C -0.08 -0.90 6.33 -39.36 -0.25 -1.15 16 25 Cl -0.06 -0.71 28.50 -51.86 -1.48 -2.19 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 28 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 29 H 0.14 1.27 6.30 -52.49 -0.33 0.94 16 30 H 0.15 2.05 6.47 -52.49 -0.34 1.71 16 31 H 0.09 0.95 7.55 -51.93 -0.39 0.56 16 32 H 0.09 0.66 7.91 -51.93 -0.41 0.24 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.78 7.79 -51.93 -0.40 0.37 16 35 H 0.07 0.51 7.94 -51.93 -0.41 0.10 16 36 H 0.12 1.93 8.14 -51.93 -0.42 1.51 16 37 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 38 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -34.56 372.41 -9.64 -44.20 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.59 Total: -0.89 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -0.92 Total: -24.98 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.35 Total: -38.56 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -2.03 Total: -43.09 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 44.58 SS G_CDS: -0.57 Total: 44.01 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.48 Total: -2.19 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.56 -9.64 -44.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416612537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.986 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds