Wall clock time and date at job start Wed Apr 1 2020 04:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35930 * 116.99986 * 2 1 4 4 C 1.38707 * 120.05650 * 359.72179 * 3 2 1 5 5 C 1.38150 * 119.95366 * 180.29946 * 4 3 2 6 6 C 1.38282 * 120.07704 * 359.95953 * 5 4 3 7 7 C 1.50697 * 119.93922 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47251 * 270.01691 * 7 6 5 9 9 C 1.46494 * 119.99817 * 275.00240 * 8 7 6 10 10 S 1.65600 * 119.99882 * 95.00165 * 8 7 6 11 11 O 1.42102 * 104.27571 * 206.07197 * 10 8 7 12 12 O 1.42101 * 104.27348 * 333.92883 * 10 8 7 13 13 C 1.81400 * 104.45033 * 89.99968 * 10 8 7 14 14 C 1.53000 * 109.46816 * 179.97438 * 13 10 8 15 15 C 1.50708 * 109.46654 * 180.02562 * 14 13 10 16 16 H 1.08001 * 120.00306 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99777 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99811 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99948 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47041 * 89.99557 * 19 17 15 21 21 H 1.48503 * 109.46923 * 209.99776 * 19 17 15 22 22 H 1.48505 * 109.46933 * 329.99410 * 19 17 15 23 23 C 1.38249 * 120.12038 * 0.03767 * 6 5 4 24 24 C 1.38253 * 120.04031 * 359.97438 * 23 6 5 25 25 Cl 1.73601 * 120.03985 * 179.97438 * 24 23 6 26 26 H 1.09002 * 109.46907 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46894 * 300.00228 * 1 2 3 28 28 H 1.09001 * 109.46908 * 60.00014 * 1 2 3 29 29 H 1.07998 * 120.02447 * 0.27659 * 4 3 2 30 30 H 1.07993 * 119.96357 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47317 * 30.02322 * 7 6 5 32 32 H 1.09000 * 109.47154 * 150.01851 * 7 6 5 33 33 H 1.09001 * 109.47431 * 90.00071 * 9 8 7 34 34 H 1.09000 * 109.47020 * 209.99553 * 9 8 7 35 35 H 1.08998 * 109.47501 * 329.99636 * 9 8 7 36 36 H 1.08994 * 109.47208 * 300.00232 * 13 10 8 37 37 H 1.09000 * 109.46756 * 60.00029 * 13 10 8 38 38 H 1.08994 * 109.47258 * 299.99760 * 14 13 10 39 39 H 1.09000 * 109.47274 * 60.00542 * 14 13 10 40 40 H 0.97005 * 119.99803 * 179.97438 * 18 17 15 41 41 H 1.07993 * 119.97937 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2919 2.3752 -0.0058 5 6 1.9213 3.6050 -0.0121 6 6 3.3022 3.6767 -0.0117 7 6 3.9856 5.0198 -0.0179 8 7 4.2074 5.4485 -1.4012 9 6 5.3975 4.9965 -2.1261 10 16 3.1129 6.4438 -2.1452 11 8 3.2648 6.1594 -3.5291 12 8 1.8883 6.1821 -1.4736 13 6 3.6981 8.1197 -1.7717 14 6 2.7585 9.1427 -2.4130 15 6 3.2451 10.5350 -2.1032 16 1 4.1352 10.6761 -1.5080 17 6 2.5533 11.6288 -2.5787 18 7 1.4691 11.4571 -3.3030 19 14 3.1568 13.3546 -2.1953 20 1 4.0951 13.7982 -3.2574 21 1 1.9989 14.2826 -2.1385 22 1 3.8561 13.3548 -0.8853 23 6 4.0571 2.5185 -0.0058 24 6 3.4323 1.2852 0.0002 25 17 4.3802 -0.1692 0.0069 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2133 2.3202 -0.0059 30 1 1.3342 4.5113 -0.0170 31 1 3.3570 5.7496 0.4923 32 1 4.9434 4.9425 0.4965 33 1 5.1753 4.0632 -2.6434 34 1 5.6895 5.7542 -2.8532 35 1 6.2132 4.8359 -1.4212 36 1 3.7136 8.2669 -0.6918 37 1 4.7040 8.2506 -2.1706 38 1 2.7435 8.9954 -3.4928 39 1 1.7524 9.0120 -2.0144 40 1 0.9822 12.2266 -3.6372 41 1 5.1354 2.5772 -0.0051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416612537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:48 Heat of formation + Delta-G solvation = -116.276861 kcal Electronic energy + Delta-G solvation = -25937.809177 eV Core-core repulsion = 21970.281335 eV Total energy + Delta-G solvation = -3967.527842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.25198 -39.07976 -38.13712 -37.54976 -36.96199 -36.61200 -35.87728 -33.10790 -31.96700 -31.88355 -28.86886 -27.66377 -27.46247 -25.54518 -23.71314 -23.44842 -22.39296 -19.84186 -19.32996 -18.97077 -18.26856 -17.49561 -17.39886 -17.19181 -16.78820 -16.67146 -16.51337 -15.79814 -15.50866 -15.13042 -14.97886 -14.91513 -14.47002 -14.32423 -14.16903 -13.90030 -13.69960 -13.34455 -13.13096 -13.00191 -12.95797 -12.91695 -12.76924 -12.58169 -12.45850 -12.43091 -12.23275 -12.10543 -11.96851 -11.94450 -11.81163 -11.70918 -11.12764 -10.64262 -10.01086 -9.90863 -9.17822 -8.25594 -6.39569 -0.69934 0.13237 0.22233 1.16260 1.41609 1.43197 1.54294 1.80720 2.22883 2.38594 2.58206 2.90931 3.07932 3.23565 3.68470 3.76654 3.84986 3.98412 4.09068 4.13722 4.28345 4.33629 4.35698 4.39702 4.53824 4.70364 4.72311 4.75420 4.78975 4.80477 4.95977 5.03757 5.06932 5.23192 5.28330 5.29629 5.50799 5.62278 5.69169 5.69426 6.07103 6.22589 6.74489 7.30777 8.86600 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.002430 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.863586 B =11519.588490 C =12121.956176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.322 6.322 3 C 0.129 3.871 4 C -0.207 4.207 5 C -0.069 4.069 6 C -0.142 4.142 7 C 0.161 3.839 8 N -0.994 5.994 9 C 0.084 3.916 10 S 2.608 3.392 11 O -1.000 7.000 12 O -0.982 6.982 13 C -0.588 4.588 14 C 0.021 3.979 15 C -0.538 4.538 16 H 0.076 0.924 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.973 3.027 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.256 1.256 23 C -0.050 4.050 24 C -0.091 4.091 25 Cl -0.061 7.061 26 H 0.123 0.877 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.152 0.848 30 H 0.139 0.861 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.002 0.998 39 H 0.008 0.992 40 H 0.267 0.733 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.213 -21.524 10.877 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.082 3.918 4 C -0.226 4.226 5 C -0.088 4.088 6 C -0.144 4.144 7 C 0.037 3.963 8 N -0.832 5.832 9 C -0.061 4.061 10 S 2.705 3.295 11 O -0.990 6.990 12 O -0.972 6.972 13 C -0.720 4.720 14 C -0.018 4.018 15 C -0.577 4.577 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.180 1.180 23 C -0.069 4.069 24 C -0.119 4.119 25 Cl -0.032 7.032 26 H 0.141 0.859 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.169 0.831 30 H 0.157 0.843 31 H 0.115 0.885 32 H 0.149 0.851 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.163 0.837 37 H 0.157 0.843 38 H 0.020 0.980 39 H 0.026 0.974 40 H 0.076 0.924 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.522 -22.094 10.280 24.986 hybrid contribution -0.153 1.263 -0.104 1.276 sum 5.369 -20.831 10.176 23.797 Atomic orbital electron populations 1.23398 0.76202 1.05833 1.02346 1.86119 1.23547 1.25726 1.88165 1.18906 0.90928 0.85524 0.96417 1.21434 1.01328 0.91265 1.08566 1.21517 0.95220 0.98228 0.93801 1.20302 0.93551 0.96273 1.04282 1.20451 1.02982 0.91683 0.81178 1.57404 1.39142 1.62801 1.23842 1.21733 0.86665 1.00293 0.97374 1.04958 0.74240 0.77027 0.73243 1.93492 1.86609 1.84274 1.34605 1.93460 1.43734 1.84362 1.75614 1.30391 1.11080 1.18720 1.11831 1.18807 0.93635 0.94573 0.94781 1.21536 1.11763 0.90792 1.33619 0.90545 1.26121 0.94940 1.04578 0.94650 1.70103 1.18648 1.32405 1.36307 0.85328 0.77914 0.77790 0.79334 1.19671 1.20898 1.18004 1.21021 1.01528 0.88376 0.96012 1.20348 0.88900 0.89231 1.13394 1.98348 1.71395 1.36241 1.97247 0.85885 0.91348 0.92086 0.83091 0.84337 0.88516 0.85060 0.93093 0.91181 0.86960 0.83721 0.84318 0.97974 0.97378 0.92421 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -6.77 9.96 -92.76 -0.92 -7.69 16 3 C 0.13 2.96 6.68 22.52 0.15 3.11 16 4 C -0.21 -4.67 9.04 22.36 0.20 -4.47 16 5 C -0.07 -1.70 9.11 22.26 0.20 -1.50 16 6 C -0.14 -3.03 5.46 -19.85 -0.11 -3.14 16 7 C 0.16 2.93 5.43 85.63 0.47 3.40 16 8 N -0.99 -22.96 3.10 -543.24 -1.68 -24.65 16 9 C 0.08 1.52 10.24 127.77 1.31 2.83 16 10 S 2.61 89.49 5.32 -56.49 -0.30 89.19 16 11 O -1.00 -41.68 17.09 -127.65 -2.18 -43.86 16 12 O -0.98 -37.25 14.81 -127.65 -1.89 -39.14 16 13 C -0.59 -21.27 6.12 71.98 0.44 -20.83 16 14 C 0.02 1.07 4.98 29.85 0.15 1.22 16 15 C -0.54 -29.35 9.11 25.60 0.23 -29.12 16 16 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 17 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 18 N -0.94 -56.52 13.29 21.45 0.28 -56.23 16 19 Si 0.97 42.68 29.54 68.60 2.03 44.71 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 23 C -0.05 -0.96 9.48 22.28 0.21 -0.75 16 24 C -0.09 -2.02 6.33 22.41 0.14 -1.88 16 25 Cl -0.06 -1.26 28.50 -2.72 -0.08 -1.33 16 26 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 0.74 7.67 -2.39 -0.02 0.72 16 28 H 0.06 0.76 7.65 -2.39 -0.02 0.75 16 29 H 0.15 2.77 6.30 -2.91 -0.02 2.76 16 30 H 0.14 3.81 6.47 -2.91 -0.02 3.79 16 31 H 0.10 1.74 7.55 -2.39 -0.02 1.72 16 32 H 0.13 1.29 7.91 -2.39 -0.02 1.28 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.33 7.79 -2.39 -0.02 1.31 16 35 H 0.11 1.09 7.94 -2.39 -0.02 1.07 16 36 H 0.14 4.42 8.14 -2.39 -0.02 4.41 16 37 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 38 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 41 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -77.13 372.41 1.26 -75.86 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.04 Total: 12.74 kcal Atomic # 6 Polarization: -54.57 SS G_CDS: 4.97 Total: -49.60 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -1.40 Total: -80.88 kcal Atomic # 8 Polarization: -85.70 SS G_CDS: -5.00 Total: -90.69 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 89.49 SS G_CDS: -0.30 Total: 89.19 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.33 kcal Total: -77.13 1.26 -75.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416612537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.413 kcal (2) G-P(sol) polarization free energy of solvation -77.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds