Wall clock time and date at job start Wed Apr 1 2020 04:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00239 * 2 1 4 4 C 1.53004 * 109.46497 * 274.99529 * 3 2 1 5 5 N 1.46501 * 109.46497 * 179.97438 * 4 3 2 6 6 C 1.34781 * 119.99357 * 180.02562 * 5 4 3 7 7 O 1.21579 * 120.00563 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99502 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99903 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47451 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99411 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00164 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99591 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00116 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.46931 * 89.99444 * 14 12 10 16 16 H 1.48492 * 109.47424 * 209.99866 * 14 12 10 17 17 H 1.48503 * 109.47234 * 329.99847 * 14 12 10 18 18 S 1.65607 * 120.00002 * 179.97438 * 2 1 3 19 19 O 1.42098 * 106.40163 * 156.46382 * 18 2 1 20 20 O 1.42104 * 106.39920 * 23.54219 * 18 2 1 21 21 C 1.76201 * 107.22020 * 270.00661 * 18 2 1 22 22 C 1.33381 * 125.20759 * 89.99587 * 21 18 2 23 23 C 1.38427 * 114.92374 * 180.02562 * 22 21 18 24 24 C 1.33387 * 114.91991 * 0.25034 * 23 22 21 25 25 S 1.75886 * 109.59194 * 359.63459 * 24 23 22 26 26 H 1.08994 * 109.46981 * 270.00418 * 1 2 3 27 27 H 1.08992 * 109.46777 * 30.00449 * 1 2 3 28 28 H 1.09001 * 109.47124 * 150.00291 * 1 2 3 29 29 H 1.08999 * 109.47323 * 34.99221 * 3 2 1 30 30 H 1.09001 * 109.47218 * 154.99807 * 3 2 1 31 31 H 1.08999 * 109.47082 * 299.99839 * 4 3 2 32 32 H 1.09001 * 109.47160 * 60.00242 * 4 3 2 33 33 H 0.97001 * 120.00695 * 359.97438 * 5 4 3 34 34 H 0.97003 * 119.99987 * 359.97438 * 8 6 5 35 35 H 1.09009 * 109.46763 * 299.99906 * 9 8 6 36 36 H 1.08996 * 109.47613 * 59.99328 * 9 8 6 37 37 H 0.96998 * 119.99631 * 180.02562 * 13 12 10 38 38 H 1.08001 * 122.53741 * 0.05874 * 22 21 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 23 22 21 40 40 H 1.08002 * 125.20431 * 179.75072 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3437 1.7731 -1.4371 5 7 3.0758 3.0421 -1.4371 6 6 3.3241 3.6767 -2.5999 7 8 2.9411 3.1959 -3.6488 8 7 3.9980 4.8439 -2.5999 9 6 4.2675 5.5341 -3.8637 10 6 5.0288 6.8055 -3.5895 11 1 5.2865 7.0724 -2.5752 12 6 5.3972 7.6273 -4.6335 13 7 6.0611 8.7370 -4.3940 14 14 4.9521 7.1652 -6.3878 15 1 3.6263 7.7400 -6.7299 16 1 5.9789 7.7017 -7.3167 17 1 4.8972 5.6863 -6.5114 18 16 2.2930 -1.4342 0.0006 19 8 3.5760 -1.1570 -0.5438 20 8 1.4113 -2.4068 -0.5434 21 6 2.5537 -1.8853 1.6839 22 6 1.7236 -2.6270 2.4186 23 6 2.1388 -2.8517 3.7199 24 6 3.3037 -2.2880 4.0434 25 16 3.9480 -1.4256 2.6525 26 1 -0.3633 0.0001 1.0276 27 1 -0.3632 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6502 2.0044 0.5893 30 1 3.1858 1.1177 0.4343 31 1 2.8911 1.0374 -2.0264 32 1 1.3555 1.9241 -1.8714 33 1 3.3811 3.4260 -0.6002 34 1 4.3039 5.2274 -1.7630 35 1 4.8601 4.8878 -4.5114 36 1 3.3246 5.7744 -4.3548 37 1 6.3200 9.3153 -5.1285 38 1 0.7979 -3.0228 2.0277 39 1 1.5611 -3.4353 4.4214 40 1 3.7794 -2.3529 5.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426451989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:48 Heat of formation + Delta-G solvation = -57.666974 kcal Electronic energy + Delta-G solvation = -25257.866651 eV Core-core repulsion = 21327.216782 eV Total energy + Delta-G solvation = -3930.649869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.35961 -38.38164 -37.58554 -37.22741 -36.20658 -34.48043 -33.95436 -32.29084 -30.43193 -29.67785 -27.65093 -26.06277 -24.92800 -23.04457 -21.83628 -20.78343 -20.33508 -19.56969 -18.81950 -18.16096 -17.84229 -16.62961 -16.49565 -16.31039 -15.83891 -15.31733 -15.29632 -14.80953 -14.41208 -14.22640 -14.10150 -13.75827 -13.61445 -13.47478 -13.12251 -13.07701 -13.03587 -12.56249 -12.42079 -12.35168 -12.26651 -12.15960 -11.97501 -11.91039 -11.39416 -11.35031 -10.94928 -10.71863 -9.92753 -9.92330 -9.67633 -9.52568 -9.41980 -9.10488 -8.85687 -8.71720 -7.97871 -6.17561 -4.19121 -0.21936 0.07869 0.91451 1.26498 1.91051 2.48309 3.22655 3.31276 3.36785 3.41804 3.47894 3.84614 4.02635 4.28542 4.33926 4.38064 4.68656 4.70102 4.77511 4.84542 5.00883 5.07496 5.13746 5.18250 5.23179 5.36413 5.42408 5.43084 5.68585 5.81711 5.87259 6.06788 6.74387 6.78402 7.16165 7.28104 7.44373 7.59116 8.31737 8.72387 8.85074 9.24314 9.44364 10.94385 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022855 B = 0.002076 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.805559 B =13482.918468 C =14079.105655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.992 5.992 3 C 0.112 3.888 4 C 0.121 3.879 5 N -0.753 5.753 6 C 0.696 3.304 7 O -0.601 6.601 8 N -0.722 5.722 9 C 0.238 3.762 10 C -0.541 4.541 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.894 5.894 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.260 1.260 18 S 2.713 3.287 19 O -0.939 6.939 20 O -0.946 6.946 21 C -0.796 4.796 22 C 0.005 3.995 23 C -0.165 4.165 24 C -0.175 4.175 25 S 0.221 5.779 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.394 0.606 34 H 0.392 0.608 35 H 0.024 0.976 36 H 0.018 0.982 37 H 0.267 0.733 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 -23.485 22.192 34.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.831 5.831 3 C -0.014 4.014 4 C -0.006 4.006 5 N -0.412 5.412 6 C 0.396 3.604 7 O -0.481 6.481 8 N -0.375 5.375 9 C 0.115 3.885 10 C -0.579 4.579 11 H 0.097 0.903 12 C -0.127 4.127 13 N -0.531 5.531 14 Si 0.704 3.296 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.184 1.184 18 S 2.799 3.201 19 O -0.929 6.929 20 O -0.936 6.936 21 C -0.996 4.996 22 C -0.030 4.030 23 C -0.196 4.196 24 C -0.313 4.313 25 S 0.487 5.513 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.227 0.773 34 H 0.226 0.774 35 H 0.041 0.959 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.634 -23.336 20.125 32.286 hybrid contribution -1.195 -0.496 1.101 1.699 sum -10.829 -23.832 21.226 33.701 Atomic orbital electron populations 1.21707 0.77449 1.05020 1.02339 1.57281 1.15754 1.20796 1.89295 1.21479 0.97115 0.85327 0.97461 1.21461 0.97421 0.85686 0.96055 1.44889 1.63232 1.24749 1.08281 1.16062 0.79588 0.81282 0.83492 1.90871 1.58495 1.68191 1.30495 1.45377 1.58478 1.21609 1.11993 1.19366 0.95920 0.91927 0.81278 1.21095 1.36614 1.04093 0.96121 0.90291 1.24786 0.94150 0.94455 0.99310 1.69883 1.38345 1.12279 1.32621 0.86805 0.78565 0.80052 0.84212 1.19883 1.20968 1.18384 1.01634 0.73508 0.72445 0.72552 1.93652 1.39773 1.84170 1.75277 1.93586 1.66144 1.58526 1.75340 1.36073 1.09958 1.22401 1.31181 1.20065 0.98504 0.91941 0.92531 1.20448 0.97648 1.04387 0.97085 1.26315 0.99734 1.01953 1.03329 1.84406 1.18031 1.48996 0.99863 0.92366 0.89724 0.89575 0.89039 0.89316 0.90996 0.91264 0.77310 0.77439 0.95857 0.96360 0.92312 0.82771 0.83232 0.80850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.47 10.68 59.85 0.64 1.11 16 2 N -0.99 -8.17 3.18 -121.76 -0.39 -8.56 16 3 C 0.11 0.93 5.44 -4.04 -0.02 0.91 16 4 C 0.12 1.53 6.00 -4.04 -0.02 1.50 16 5 N -0.75 -10.68 5.56 -65.22 -0.36 -11.04 16 6 C 0.70 13.98 8.57 -86.91 -0.74 13.24 16 7 O -0.60 -14.67 16.34 5.30 0.09 -14.58 16 8 N -0.72 -15.01 5.55 -66.41 -0.37 -15.38 16 9 C 0.24 6.00 4.50 -5.19 -0.02 5.98 16 10 C -0.54 -15.00 9.83 -34.44 -0.34 -15.34 16 11 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 12 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 13 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 14 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 18 S 2.71 28.22 5.79 -107.50 -0.62 27.60 16 19 O -0.94 -12.73 16.88 -57.17 -0.97 -13.69 16 20 O -0.95 -11.59 16.40 -57.17 -0.94 -12.53 16 21 C -0.80 -6.67 6.57 29.04 0.19 -6.48 16 22 C 0.01 0.04 9.84 -41.21 -0.41 -0.37 16 23 C -0.16 -0.88 10.18 -41.21 -0.42 -1.29 16 24 C -0.18 -0.91 11.23 29.04 0.33 -0.59 16 25 S 0.22 1.64 23.22 -107.50 -2.50 -0.85 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 28 H 0.09 0.54 7.02 -51.93 -0.36 0.17 16 29 H 0.09 0.52 8.11 -51.93 -0.42 0.10 16 30 H 0.09 0.68 7.61 -51.93 -0.40 0.28 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.39 4.13 8.49 -40.82 -0.35 3.78 16 34 H 0.39 7.02 8.34 -40.82 -0.34 6.68 16 35 H 0.02 0.63 7.20 -51.92 -0.37 0.25 16 36 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.15 0.78 8.05 -52.49 -0.42 0.35 16 39 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 40 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -38.27 370.56 -10.45 -48.72 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.17 Total: 2.78 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.92 Total: 0.76 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.35 Total: -60.91 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.82 Total: -40.81 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Atomic # 16 Polarization: 29.86 SS G_CDS: -3.12 Total: 26.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.27 -10.45 -48.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426451989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.945 kcal (2) G-P(sol) polarization free energy of solvation -38.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds