Wall clock time and date at job start Wed Apr 1 2020 04:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00239 * 2 1 4 4 C 1.53004 * 109.46497 * 274.99529 * 3 2 1 5 5 N 1.46501 * 109.46497 * 179.97438 * 4 3 2 6 6 C 1.34781 * 119.99357 * 180.02562 * 5 4 3 7 7 O 1.21579 * 120.00563 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99502 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99903 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47451 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99411 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00164 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99591 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00116 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.46931 * 89.99444 * 14 12 10 16 16 H 1.48492 * 109.47424 * 209.99866 * 14 12 10 17 17 H 1.48503 * 109.47234 * 329.99847 * 14 12 10 18 18 S 1.65607 * 120.00002 * 179.97438 * 2 1 3 19 19 O 1.42098 * 106.40163 * 156.46382 * 18 2 1 20 20 O 1.42104 * 106.39920 * 23.54219 * 18 2 1 21 21 C 1.76201 * 107.22020 * 270.00661 * 18 2 1 22 22 C 1.33381 * 125.20759 * 89.99587 * 21 18 2 23 23 C 1.38427 * 114.92374 * 180.02562 * 22 21 18 24 24 C 1.33387 * 114.91991 * 0.25034 * 23 22 21 25 25 S 1.75886 * 109.59194 * 359.63459 * 24 23 22 26 26 H 1.08994 * 109.46981 * 270.00418 * 1 2 3 27 27 H 1.08992 * 109.46777 * 30.00449 * 1 2 3 28 28 H 1.09001 * 109.47124 * 150.00291 * 1 2 3 29 29 H 1.08999 * 109.47323 * 34.99221 * 3 2 1 30 30 H 1.09001 * 109.47218 * 154.99807 * 3 2 1 31 31 H 1.08999 * 109.47082 * 299.99839 * 4 3 2 32 32 H 1.09001 * 109.47160 * 60.00242 * 4 3 2 33 33 H 0.97001 * 120.00695 * 359.97438 * 5 4 3 34 34 H 0.97003 * 119.99987 * 359.97438 * 8 6 5 35 35 H 1.09009 * 109.46763 * 299.99906 * 9 8 6 36 36 H 1.08996 * 109.47613 * 59.99328 * 9 8 6 37 37 H 0.96998 * 119.99631 * 180.02562 * 13 12 10 38 38 H 1.08001 * 122.53741 * 0.05874 * 22 21 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 23 22 21 40 40 H 1.08002 * 125.20431 * 179.75072 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3437 1.7731 -1.4371 5 7 3.0758 3.0421 -1.4371 6 6 3.3241 3.6767 -2.5999 7 8 2.9411 3.1959 -3.6488 8 7 3.9980 4.8439 -2.5999 9 6 4.2675 5.5341 -3.8637 10 6 5.0288 6.8055 -3.5895 11 1 5.2865 7.0724 -2.5752 12 6 5.3972 7.6273 -4.6335 13 7 6.0611 8.7370 -4.3940 14 14 4.9521 7.1652 -6.3878 15 1 3.6263 7.7400 -6.7299 16 1 5.9789 7.7017 -7.3167 17 1 4.8972 5.6863 -6.5114 18 16 2.2930 -1.4342 0.0006 19 8 3.5760 -1.1570 -0.5438 20 8 1.4113 -2.4068 -0.5434 21 6 2.5537 -1.8853 1.6839 22 6 1.7236 -2.6270 2.4186 23 6 2.1388 -2.8517 3.7199 24 6 3.3037 -2.2880 4.0434 25 16 3.9480 -1.4256 2.6525 26 1 -0.3633 0.0001 1.0276 27 1 -0.3632 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6502 2.0044 0.5893 30 1 3.1858 1.1177 0.4343 31 1 2.8911 1.0374 -2.0264 32 1 1.3555 1.9241 -1.8714 33 1 3.3811 3.4260 -0.6002 34 1 4.3039 5.2274 -1.7630 35 1 4.8601 4.8878 -4.5114 36 1 3.3246 5.7744 -4.3548 37 1 6.3200 9.3153 -5.1285 38 1 0.7979 -3.0228 2.0277 39 1 1.5611 -3.4353 4.4214 40 1 3.7794 -2.3529 5.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426451989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:48 Heat of formation + Delta-G solvation = -89.540810 kcal Electronic energy + Delta-G solvation = -25259.248804 eV Core-core repulsion = 21327.216782 eV Total energy + Delta-G solvation = -3932.032022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92577 -38.90369 -38.41441 -38.05871 -37.09694 -36.19187 -35.39065 -34.35380 -30.95576 -30.83772 -29.28618 -26.87624 -25.41595 -24.38616 -23.38772 -21.98097 -21.30723 -20.24934 -19.92869 -19.30273 -18.65844 -18.29706 -17.57180 -17.24703 -16.93230 -16.67508 -16.29144 -15.89692 -15.64917 -15.40538 -15.22839 -14.93686 -14.63267 -14.38284 -14.27791 -14.13369 -13.90494 -13.75221 -13.55810 -13.35732 -13.27871 -13.12781 -13.00378 -12.70207 -12.66727 -12.59329 -12.21697 -11.91783 -11.85199 -11.63074 -11.34534 -10.89719 -10.42099 -10.33268 -10.22637 -9.65721 -9.61876 -8.37964 -6.44166 -0.88909 -0.49360 0.38122 0.81681 1.34663 1.36730 1.44670 1.50601 1.69244 2.04825 2.21445 2.30670 2.58736 2.97687 3.24591 3.50631 3.69196 3.83713 4.01165 4.14784 4.30847 4.38979 4.39949 4.65393 4.68537 4.76973 4.84162 4.91369 4.96898 5.02146 5.06803 5.08039 5.27480 5.28848 5.36093 5.52712 5.57178 5.99671 6.30312 6.57854 7.16459 7.29126 7.67543 8.76582 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022855 B = 0.002076 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.805559 B =13482.918468 C =14079.105655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.990 5.990 3 C 0.119 3.881 4 C 0.116 3.884 5 N -0.728 5.728 6 C 0.694 3.306 7 O -0.646 6.646 8 N -0.720 5.720 9 C 0.250 3.750 10 C -0.543 4.543 11 H 0.062 0.938 12 C 0.027 3.973 13 N -0.930 5.930 14 Si 0.936 3.064 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.263 1.263 18 S 2.720 3.280 19 O -0.981 6.981 20 O -0.974 6.974 21 C -0.812 4.812 22 C 0.011 3.989 23 C -0.170 4.170 24 C -0.157 4.157 25 S 0.184 5.816 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.415 0.585 34 H 0.407 0.593 35 H 0.007 0.993 36 H 0.010 0.990 37 H 0.272 0.728 38 H 0.169 0.831 39 H 0.180 0.820 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.342 -24.429 24.519 36.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.829 5.829 3 C -0.008 4.008 4 C -0.011 4.011 5 N -0.386 5.386 6 C 0.394 3.606 7 O -0.529 6.529 8 N -0.373 5.373 9 C 0.126 3.874 10 C -0.581 4.581 11 H 0.080 0.920 12 C -0.174 4.174 13 N -0.569 5.569 14 Si 0.760 3.240 15 H -0.188 1.188 16 H -0.198 1.198 17 H -0.188 1.188 18 S 2.810 3.190 19 O -0.971 6.971 20 O -0.964 6.964 21 C -1.016 5.016 22 C -0.025 4.025 23 C -0.200 4.200 24 C -0.294 4.294 25 S 0.449 5.551 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.148 0.852 30 H 0.114 0.886 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.252 0.748 34 H 0.243 0.757 35 H 0.025 0.975 36 H 0.028 0.972 37 H 0.081 0.919 38 H 0.186 0.814 39 H 0.198 0.802 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -11.018 -24.288 22.500 34.893 hybrid contribution -0.799 -0.276 0.548 1.007 sum -11.817 -24.564 23.048 35.697 Atomic orbital electron populations 1.21955 0.75873 1.05172 1.04283 1.57112 1.16635 1.19830 1.89327 1.21507 0.98505 0.86030 0.94713 1.21638 0.96465 0.84028 0.98927 1.44623 1.62023 1.24563 1.07412 1.16208 0.79125 0.80948 0.84359 1.90839 1.60165 1.69194 1.32703 1.45066 1.58998 1.22002 1.11281 1.18959 0.94754 0.90837 0.82878 1.21269 1.36463 1.04911 0.95486 0.91989 1.25561 0.94135 0.94418 1.03249 1.69975 1.39528 1.13349 1.34055 0.85877 0.78921 0.79434 0.79776 1.18842 1.19820 1.18778 1.00920 0.72481 0.72496 0.73104 1.93595 1.41731 1.84787 1.76994 1.93543 1.66502 1.59651 1.76706 1.35598 1.11250 1.24653 1.30060 1.20448 0.98530 0.90488 0.93051 1.20775 0.97913 1.04513 0.96828 1.26707 0.99262 1.00133 1.03339 1.84544 1.18611 1.50431 1.01478 0.89537 0.88824 0.90236 0.85221 0.88586 0.93958 0.91274 0.74765 0.75728 0.97460 0.97173 0.91858 0.81398 0.80247 0.77844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.68 127.77 1.36 2.08 16 2 N -0.99 -15.16 3.18 -539.13 -1.72 -16.87 16 3 C 0.12 1.76 5.44 86.38 0.47 2.23 16 4 C 0.12 2.86 6.00 86.38 0.52 3.38 16 5 N -0.73 -19.77 5.56 -478.52 -2.66 -22.44 16 6 C 0.69 27.65 8.57 179.05 1.53 29.18 16 7 O -0.65 -31.86 16.34 -3.96 -0.06 -31.92 16 8 N -0.72 -29.65 5.55 -482.29 -2.68 -32.33 16 9 C 0.25 12.65 4.50 85.63 0.38 13.03 16 10 C -0.54 -30.29 9.83 25.60 0.25 -30.04 16 11 H 0.06 3.59 7.84 -2.91 -0.02 3.57 16 12 C 0.03 1.52 5.47 84.65 0.46 1.99 16 13 N -0.93 -55.78 13.96 21.45 0.30 -55.48 16 14 Si 0.94 44.90 27.47 68.60 1.88 46.78 16 15 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.26 -12.72 6.54 99.48 0.65 -12.07 16 18 S 2.72 56.81 5.79 -56.49 -0.33 56.48 16 19 O -0.98 -27.72 16.88 -128.00 -2.16 -29.88 16 20 O -0.97 -24.26 16.40 -128.00 -2.10 -26.36 16 21 C -0.81 -12.75 6.57 66.72 0.44 -12.31 16 22 C 0.01 0.12 9.84 21.22 0.21 0.33 16 23 C -0.17 -1.24 10.18 21.22 0.22 -1.02 16 24 C -0.16 -1.16 11.23 66.72 0.75 -0.41 16 25 S 0.18 2.52 23.22 -56.49 -1.31 1.21 16 26 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.09 0.79 8.07 -2.39 -0.02 0.77 16 28 H 0.08 0.92 7.02 -2.39 -0.02 0.91 16 29 H 0.13 1.00 8.11 -2.39 -0.02 0.98 16 30 H 0.10 1.33 7.61 -2.39 -0.02 1.31 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.42 7.78 8.49 -92.71 -0.79 7.00 16 34 H 0.41 14.23 8.34 -92.71 -0.77 13.45 16 35 H 0.01 0.40 7.20 -2.38 -0.02 0.39 16 36 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 37 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.17 1.32 8.05 -2.91 -0.02 1.30 16 39 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 40 H 0.20 0.17 8.06 -2.91 -0.02 0.14 16 Total: -1.00 -84.62 370.56 -4.76 -89.38 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -0.53 Total: 12.98 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 6.60 Total: 8.45 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -6.76 Total: -127.12 kcal Atomic # 8 Polarization: -83.84 SS G_CDS: -4.32 Total: -88.17 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Atomic # 16 Polarization: 59.33 SS G_CDS: -1.64 Total: 57.69 kcal Total: -84.62 -4.76 -89.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426451989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.160 kcal (2) G-P(sol) polarization free energy of solvation -84.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds